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Kumaran M, Sivaranjani T, Suresh S, Periandy S, Soundhariya S, Alibrahim KA, Alodhayb AN. Investigation of the molecular structure of CHBP, biological activities and SARS-CoV-2 protein binding interaction by molecular and biomolecular spectroscopy approaches. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 322:124853. [PMID: 39053114 DOI: 10.1016/j.saa.2024.124853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 07/10/2024] [Accepted: 07/19/2024] [Indexed: 07/27/2024]
Abstract
The objective of this investigation is to learn more about the structural, electrical, spectroscopic, and physiochemical characteristics of biologically active cyano-4'-hydroxybiphenyl (CHBP). The title molecule's optimized conformational analysis was computed using the DFT/B3LYP/6-311++G (d, p) level of theory. The observed wavenumbers were compared with theoretical FT-IR and FT-Raman spectra. 1H and 13C NMR experimental spectra in CDCl3 solution (solvent phase) were recorded and the chemical shift was calculated. NBO analysis was used to examine the transfer of charge as well as the intermolecular and intramolecular bonding of orbitals. The TD-DFT (time-dependent DFT) approach was used to estimate theoretical values for both the gas and solvent (ethanol) in the corresponding transitional research, which was conducted using UV-Vis's spectra. Energy gap (Eg = 0.26764 eV) implies that the strong potential for charge transfer, and the stability of the CHBP compound. CHBP compound's has bioactive nature, its drug-likeness and biological properties were evaluated. The predicted topological polar surface area of 44.02 \AA2 for the molecule falls within the permissible range of < 140 \AA2. Based on the docking results, the most stable docking score value is -6.84 kcal/mol. In that interaction, MET 165 affects both phenyl rings in a pi-sulphur fashion and a single bond hydrogen with protein moieties GLN 192. This suggests that the pi-alkyl in PRO 168 is a hydroxyl substitutional ring. Our findings demonstrate the CHBP compound is a good inhibitor against the SAR COVID-19 viral protein.
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Affiliation(s)
- M Kumaran
- Department of Physics, Sri ManakulaVinayagar Engineering College, Pondicherry 605107, India
| | - T Sivaranjani
- Department of Physics, Sri ManakulaVinayagar Engineering College, Pondicherry 605107, India.
| | - S Suresh
- Department of Physics, Saveetha Engineering College (Autonomous), Thandalam, Chennai 602105, Tamil Nadu, India.
| | - S Periandy
- Department of Physics, Kanchi Mamunivar Centre for Post Graduate Studies and Research, Pondicherry, India
| | - S Soundhariya
- Department of Physics, Kanchi Mamunivar Centre for Post Graduate Studies and Research, Pondicherry, India
| | - Khuloud A Alibrahim
- Department of Chemistry, College of Science, Princess Nourah bint Abdulrahman University, Riyadh 11671, Saudi Arabia
| | - Abdullah N Alodhayb
- Department of Physics and Astronomy, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
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Pandimeena G, Mathavan T, Samuel EJJ, Benial AMF. Quantum chemical and molecular docking studies on N-tert-butoxycarbonyl (Boc)-3-aminomethyl pyridine: A potential bioactive agent for the treatment of amyotrophic lateral sclerosis. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Yadav P, Shah K. An overview on synthetic and pharmaceutical prospective of pyrido[2,3-d]pyrimidines scaffold. Chem Biol Drug Des 2020; 97:633-648. [PMID: 32946161 DOI: 10.1111/cbdd.13800] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 08/30/2020] [Accepted: 09/03/2020] [Indexed: 12/26/2022]
Abstract
Pyrido[2,3-d]pyrimidine, a fused hetero-bicyclic nucleus containing pyridine and pyrimidine rings has attained the momentary attention in the sphere of multicomponent synthetic protocol and medicinal chemist. Pyrido[2,3-d]pyrimidine derived drugs have manifested diverse pharmacological activities, particularly, anti-inflammatory, cytotoxic, antimicrobial, phosphodiesterase inhibitors and cytokine inhibitors etc. The present review illustrates various modern synthetic strategies adopted, the structure-activity relationship (SAR) aspects and discloses the extensive crucial biological properties (anticancer, anti-infectious, anti-diabetics and CNS agents) of pyrido[2,3-d]pyrimidines.
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Affiliation(s)
- Pratibha Yadav
- Institute of Pharmaceutical Research, GLA University, Mathura, UP, India
| | - Kamal Shah
- Institute of Pharmaceutical Research, GLA University, Mathura, UP, India
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Halder A, Maiti D, De Sarkar S. Mechanochemical Synthesis of Functionalized Quinolines by Iodine Mediated Oxidative Annulation. Chem Asian J 2020; 15:577-580. [PMID: 32011806 DOI: 10.1002/asia.201901758] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Revised: 01/21/2020] [Indexed: 11/07/2022]
Abstract
An iodine-mediated environmentally benign synthesis of multi-substituted quinoline derivatives is developed using a solvent-free mechanochemical process. Appropriately designed and easily accessible protecting group-free aniline derivatives were used for the oxidative annulation reaction, and a series of quinoline derivatives with variable functionalities were synthesized up to 89 % isolated yield. Importantly, the activator iodine remains in the quinoline molecule and promotes further functionalizations. The present methodology is beneficial with regard to operational simplicity and mild reaction conditions.
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Affiliation(s)
- Atreyee Halder
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, 741246, West Bengal, India
| | - Debabrata Maiti
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, 741246, West Bengal, India
| | - Suman De Sarkar
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, 741246, West Bengal, India
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Design and synthesis of novel heterofused pyrimidine analogues as effective antimicrobial agents. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.01.105] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Rogalski S, Kubicki M, Pietraszuk C. Palladium catalysed regio- and stereoselective synthesis of (E)-4-aryl-1,3-bis(trimethylsilyl)but-3-en-1-ynes. Tetrahedron 2018. [DOI: 10.1016/j.tet.2018.09.013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Mohamed Asath R, Premkumar R, Mathavan T, Milton Franklin Benial A. Spectroscopic and molecular docking studies on N , N -di- tert -butoxycarbonyl (Boc)-2-amino pyridine: A potential bioactive agent for lung cancer treatment. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.04.117] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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8
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Etsè KS, Dassonneville B, Zaragoza G, Demonceau A. One-pot, Pd/Cu-catalysed synthesis of alkynyl-substituted 3-ylidene-dihydrobenzo[d]isothiazole 1,1-dioxides. Tetrahedron Lett 2017. [DOI: 10.1016/j.tetlet.2017.01.041] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Jang J, Raja GCE, Lee JH, Son Y, Kim J, Lee S. Palladium-catalyzed decarboxylative coupling reaction with alkynyl carboxylic acids and arylsiloxanes. Tetrahedron Lett 2016. [DOI: 10.1016/j.tetlet.2016.08.095] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Aguilar E, Sanz R, Fernández-Rodríguez MA, García-García P. 1,3-Dien-5-ynes: Versatile Building Blocks for the Synthesis of Carbo- and Heterocycles. Chem Rev 2016; 116:8256-311. [PMID: 27410164 DOI: 10.1021/acs.chemrev.6b00181] [Citation(s) in RCA: 86] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
1,3-Dien-5-ynes have been extensively used as starting materials for the synthesis of a wide number of different carbo- and heterocycles. The aim of this review is to give an overview of their utility in organic synthesis, highlighting the variety of compounds that can be directly accessed from single reactions over these systems. Thus, cycloaromatization processes are initially commented, followed by reactions directed toward the syntheses of five-membered rings, other carbocycles and, finally, heterocycles. The diverse methodologies that have been developed for the synthesis of each of these types of compounds from 1,3-dien-5-ynes are presented, emphasizing the influence of the reaction conditions and the use of additional reagents in the outcome of the transformations.
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Affiliation(s)
- Enrique Aguilar
- Instituto Universitario de Química Organometálica "Enrique Moles", Departamento de Química Orgánica e Inorgánica, Universidad de Oviedo , C/Julián Clavería 8, 33006 Oviedo, Spain
| | - Roberto Sanz
- Departamento de Química, Área de Química Orgánica, Facultad de Ciencias, Universidad de Burgos , Pza. Misael Bañuelos s/n, 09001 Burgos, Spain
| | - Manuel A Fernández-Rodríguez
- Departamento de Química, Área de Química Orgánica, Facultad de Ciencias, Universidad de Burgos , Pza. Misael Bañuelos s/n, 09001 Burgos, Spain
| | - Patricia García-García
- Departamento de Química Orgánica y Química Inorgánica, Universidad de Alcalá , 28871 Alcalá de Henares, Madrid, Spain
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Abstract
Silver is a less expensive noble metal. Superior alkynophilicity due to π-coordination with the carbon-carbon triple bond makes silver salts ideal catalysts for alkyne-based organic reactions. This review highlights the progress in alkyne chemistry via silver catalysis primarily over the past five years (ca. 2010-2014). The discussion is developed in terms of the bond type formed with the acetylenic carbon (i.e., C-C, C-N, C-O, C-Halo, C-P and C-B). Compared with other coinage metals such as Au and Cu, silver catalysis is frequently observed to be unique. This critical review clearly indicates that silver catalysis provides a significant impetus to the rapid evolution of alkyne-based organic reactions, such as alkynylation, hydrofunctionalization, cycloaddition, cycloisomerization, and cascade reactions.
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Affiliation(s)
- Guichun Fang
- Department of Chemistry, Northeast Normal University, Changchun 130024, China.
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Dhokale B, Jadhav T, Mobin SM, Misra R. Meso enyne substituted BODIPYs: synthesis, structure and properties. Dalton Trans 2015; 44:15803-12. [DOI: 10.1039/c5dt00565e] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
We report the synthesis of meso enyne substituted BODIPYs by the reaction of 8-chloro BODIPY with terminal alkynes under Sonogashira coupling conditions, and by Pd–Cu catalyzed hydroalkynylation reaction of terminal alkynes, across the –CC– bond of meso alkynylated BODIPYs.
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Affiliation(s)
- Bhausaheb Dhokale
- Department of Chemistry
- Indian Institute of Technology
- Indore 452 017
- India
| | - Thaksen Jadhav
- Department of Chemistry
- Indian Institute of Technology
- Indore 452 017
- India
| | - Shaikh M. Mobin
- Department of Chemistry
- Indian Institute of Technology
- Indore 452 017
- India
| | - Rajneesh Misra
- Department of Chemistry
- Indian Institute of Technology
- Indore 452 017
- India
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