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Manawadu D, Valentine DJ, Barford W. Dynamical Simulations of Carotenoid Photoexcited States Using Density Matrix Renormalization Group Techniques. J Phys Chem A 2023; 127:3714-3727. [PMID: 37054397 PMCID: PMC10150368 DOI: 10.1021/acs.jpca.3c00988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
We present a dynamical simulation scheme to model the highly correlated excited state dynamics of linear polyenes. We apply it to investigate the internal conversion processes of carotenoids following their photoexcitation. We use the extended Hubbard-Peierls model, H^UVP, to describe the π-electronic system coupled to nuclear degrees of freedom. This is supplemented by a Hamiltonian, H^ϵ, that explicitly breaks both the particle-hole and two-fold rotation symmetries of idealized carotenoid structures. The electronic degrees of freedom are treated quantum mechanically by solving the time-dependent Schrödinger equation using the adaptive time-dependent DMRG (tDMRG) method, while nuclear dynamics are treated via the Ehrenfest equations of motion. By defining adiabatic excited states as the eigenstates of the full Hamiltonian, H^=H^UVP+H^ϵ, and diabatic excited states as eigenstates of H^UVP, we present a computational framework to monitor the internal conversion process from the initial photoexcited 11Bu+ state to the singlet triplet-pair states of carotenoids. We further incorporate Lanczos-DMRG to the tDMRG-Ehrenfest method to calculate transient absorption spectra from the evolving photoexcited state. We describe in detail the accuracy and convergence criteria for DMRG, and show that this method accurately describes the dynamical processes of carotenoid excited states. We also discuss the effect of the symmetry-breaking term, H^ϵ, on the internal conversion process, and show that its effect on the extent of internal conversion can be described by a Landau-Zener-type transition. This methodological paper is a companion to our more explanatory discussion of carotenoid excited state dynamics in Manawadu, D.; Georges, T. N.; Barford, W. Photoexcited State Dynamics and Singlet Fission in Carotenoids. J. Phys. Chem. A 2023, 127, 1342.
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Affiliation(s)
- Dilhan Manawadu
- Department of Chemistry, Physical and Theoretical Chemistry Laboratory, University of Oxford, Oxford OX1 3QZ, United Kingdom
- Linacre College, University of Oxford, Oxford OX1 3JA, United Kingdom
| | - Darren J Valentine
- Department of Chemistry, Physical and Theoretical Chemistry Laboratory, University of Oxford, Oxford OX1 3QZ, United Kingdom
- Balliol College, University of Oxford, Oxford OX1 3BJ, United Kingdom
| | - William Barford
- Department of Chemistry, Physical and Theoretical Chemistry Laboratory, University of Oxford, Oxford OX1 3QZ, United Kingdom
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Manawadu D, Georges TN, Barford W. Photoexcited State Dynamics and Singlet Fission in Carotenoids. J Phys Chem A 2023; 127:1342-1352. [PMID: 36701532 PMCID: PMC9923744 DOI: 10.1021/acs.jpca.2c07781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
We describe our simulations of the excited state dynamics of the carotenoid neurosporene, following its photoexcitation into the "bright" (nominally 11Bu+) state. To account for the experimental and theoretical uncertainty in the relative energetic ordering of the nominal 11Bu+ and 21Ag- states at the Franck-Condon point, we consider two parameter sets. In both cases, there is ultrafast internal conversion from the "bright" state to a "dark" singlet triplet-pair state, i.e., to one member of the "2Ag" family of states. For one parameter set, internal conversion from the 11Bu+ to 21Ag- states occurs via the dark, intermediate 11Bu- state. In this case, there is a cross over of the 11Bu+ and 11Bu- diabatic energies within 5 fs and an associated avoided crossing of the S2 and S3 adiabatic energies. After the adiabatic evolution of the S2 state from predominately 11Bu+ character to predominately 11Bu- character, there is a slower nonadiabatic transition from S2 to S1, accompanied by an increase in the population of the 21Ag- state. For the other parameter set, the 21Ag- energy lies higher than the 11Bu+ energy at the Franck-Condon point. In this case, there is cross over of the 21Ag- and 11Bu+ energies and an avoided crossing of the S1 and S2 energies, as the S1 state evolves adiabatically from being of 11Bu+ character to 21Ag- character. We make a direct connection from our predictions to experimental observables by calculating the time-resolved excited state absorption. For the case of direct 11Bu+ to 21Ag- internal conversion, we show that the dominant transition at ca. 2 eV, being close to but lower in energy than the T1 to T1* transition, can be attributed to the 21Ag- component of S1. Moreover, we show that it is the charge-transfer exciton component of the 21Ag- state that is responsible for this transition (to a higher-lying exciton state), and not its triplet-pair component. These simulations are performed using the adaptive tDMRG method on the extended Hubbard model of π-conjugated electrons. The Ehrenfest equations of motion are used to simulate the coupled nuclei dynamics. We next discuss the microscopic mechanism of "bright" to "dark" state internal conversion and emphasize that this occurs via the exciton components of both states. Finally, we describe a mechanism relying on torsional relaxation whereby the strongly bound intrachain triplet-pairs of the "dark" state may undergo interchain exothermic dissociation.
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Affiliation(s)
- Dilhan Manawadu
- Department
of Chemistry, Physical and Theoretical Chemistry Laboratory, University of Oxford, Oxford OX1 3QZ, United Kingdom,Linacre
College, University of Oxford, Oxford OX1 3JA, United Kingdom,E-mail:
| | - Timothy N. Georges
- Department
of Chemistry, Physical and Theoretical Chemistry Laboratory, University of Oxford, Oxford OX1 3QZ, United Kingdom,Brasenose
College, University of Oxford, Oxford OX1 4AJ, United Kingdom
| | - William Barford
- Department
of Chemistry, Physical and Theoretical Chemistry Laboratory, University of Oxford, Oxford OX1 3QZ, United Kingdom,E-mail:
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3
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Liu XL, Hu YY, Li K, Chen MQ, Wang P. Reconstituted LH2 in multilayer membranes induced by poly-L-lysine: structure of supramolecular and electronic states. ARAB J CHEM 2023. [DOI: 10.1016/j.arabjc.2023.104600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
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4
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Optimized Rhodobacter sphaeroides for the Production of Antioxidants and the Pigments with Antioxidant Activity. Mol Biotechnol 2023; 65:131-135. [PMID: 35945473 DOI: 10.1007/s12033-022-00547-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2022] [Accepted: 07/11/2022] [Indexed: 01/11/2023]
Abstract
The photosynthetic bacterium, Rhodobacter sphaeroides, is a bacterium that can grow in a variety of environments and produces substances with antioxidant effects. In this study, we investigated the culture conditions to increase the production of antioxidants in R. sphaeroides, which can grow under both aerobic and anaerobic conditions. After incubation in the exponential phase and stationary phase under both conditions, a 2,2-diphenyl-1-picrylhydrazyl assay was used to confirm the antioxidant effect. Although the highest antioxidant effect was shown in the stationary phase under aerobic conditions, the antioxidant effect of each cell was found to be greater when cultured under anaerobic conditions. The antioxidant activity of R. sphaeroides was increased by sonication. In addition, the contents of carotenoids and bacteriochlorophyll, which are pigments with antioxidant effects, produced by R. sphaeroides were measured. We confirmed that the content of carotenoids was higher in anaerobic conditions than in aerobic conditions. However, when measuring the content of the bacterium, we found that there was more content in aerobic conditions. Therefore, we confirm that when grown in anaerobic conditions, the antioxidant effect of R. sphaeroides is higher, which suggests that this antioxidant effect comes from the effect of carotenoid.
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Pamu R, Khomami B, Mukherjee D. Observation of anomalous carotenoid and blind chlorophyll activations in photosystem I under synthetic membrane confinements. BIOCHIMICA ET BIOPHYSICA ACTA. BIOMEMBRANES 2022; 1864:183930. [PMID: 35398026 DOI: 10.1016/j.bbamem.2022.183930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Revised: 03/27/2022] [Accepted: 04/01/2022] [Indexed: 06/14/2023]
Abstract
The role of natural thylakoid membrane confinements in architecting the robust structural and electrochemical properties of PSI is not fully understood. Most PSI studies till date extract the proteins from their natural confinements that can lead to non-native conformations. Recently our group had successfully reconstituted PSI in synthetic lipid membranes using detergent-mediated liposome solubilizations. In this study, we investigate the alterations in chlorophylls and carotenoids interactions and reorganization in PSI based on spectral property changes induced by its confinement in anionic DPhPG and zwitterionic DPhPC phospholipid membranes. To this end, we employ a combination of absorption, fluorescence, and circular dichroism (CD) spectroscopic measurements. Our results indicate unique activation and alteration of photoresponses from the PSI carotenoid (Car) bands in PSI-DPhPG proteoliposomes that can tune the Excitation Energy Transfer (EET), otherwise absent in PSI at non-native environments. Specifically, we observe broadband light harvesting via enhanced absorption in the otherwise non-absorptive green region (500-580 nm) of the Chlorophylls (Chl) along with ~64% increase in the full-width half maximum of the Qy band (650-720 nm). The CD results indicate enhanced Chl-Chl and Chl-Car interactions along with conformational changes in protein secondary structures. Such distinct changes in the Car and Chl bands are not observed in PSI confined in DPhPC. The fundamental insights into membrane microenvironments tailoring PSI subunits reorganization and interactions provide novel strategies for tuning photoexcitation processes and rational designing of biotic-abiotic interfaces in PSI-based photoelectrochemical energy conversion systems.
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Affiliation(s)
- Ravi Pamu
- Department of Mechanical, Aerospace, and Biomedical Engineering, University of Tennessee, Knoxville, TN 37996, USA; Nano-BioMaterials Laboratory for Energy, Energetics & Environment (nbml-E3), University of Tennessee, Knoxville, TN 37996, USA; Sustainable Energy Education and Research Center (SEERC), University of Tennessee, Knoxville, TN 37996, USA
| | - Bamin Khomami
- Department of Chemical and Biomolecular Engineering, University of Tennessee, Knoxville, TN 37996, USA; Department of Mechanical, Aerospace, and Biomedical Engineering, University of Tennessee, Knoxville, TN 37996, USA; Sustainable Energy Education and Research Center (SEERC), University of Tennessee, Knoxville, TN 37996, USA.
| | - Dibyendu Mukherjee
- Department of Chemical and Biomolecular Engineering, University of Tennessee, Knoxville, TN 37996, USA; Nano-BioMaterials Laboratory for Energy, Energetics & Environment (nbml-E3), University of Tennessee, Knoxville, TN 37996, USA; Sustainable Energy Education and Research Center (SEERC), University of Tennessee, Knoxville, TN 37996, USA.
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Knox PP, Lukashev EP, Korvatovskiy BN, Strakhovskaya MG, Makhneva ZK, Bol'shakov MA, Paschenko VZ. Disproportionate effect of cationic antiseptics on the quantum yield and fluorescence lifetime of bacteriochlorophyll molecules in the LH1-RC complex of R. rubrum chromatophores. PHOTOSYNTHESIS RESEARCH 2022; 153:103-112. [PMID: 35277801 DOI: 10.1007/s11120-022-00909-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2022] [Accepted: 02/26/2022] [Indexed: 06/14/2023]
Abstract
Photosynthetic membrane complexes of purple bacteria are convenient and informative macromolecular systems for studying the mechanisms of action of various physicochemical factors on the functioning of catalytic proteins both in an isolated state and as part of functional membranes. In this work, we studied the effect of cationic antiseptics (chlorhexidine, picloxydine, miramistin, and octenidine) on the fluorescence intensity and the efficiency of energy transfer from the light-harvesting LH1 complex to the reaction center (RC) of Rhodospirillum rubrum chromatophores. The effect of antiseptics on the fluorescence intensity and the energy transfer increased in the following order: chlorhexidine, picloxydine, miramistin, octenidine. The most pronounced changes in the intensity and lifetime of fluorescence were observed with the addition of miramistin and octenidine. At the same concentration of antiseptics, the increase in fluorescence intensity was 2-3 times higher than the increase in its lifetime. It is concluded that the addition of antiseptics decreases the efficiency of the energy migration LH1 → RC and increases the fluorescence rate constant kfl. We associate the latter with a change in the polarization of the microenvironment of bacteriochlorophyll molecules upon the addition of charged antiseptic molecules. A possible mechanism of antiseptic action on R. rubrum chromatophores is considered. This work is a continuation of the study of the effect of antiseptics on the energy transfer and fluorescence intensity in chromatophores of purple bacteria published earlier in Photosynthesis Research (Strakhovskaya et al. in Photosyn Res 147:197-209, 2021).
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Affiliation(s)
- Peter P Knox
- Faculty of Biology, Lomonosov Moscow State University, Moscow, Russian Federation, 119234
| | - Eugene P Lukashev
- Faculty of Biology, Lomonosov Moscow State University, Moscow, Russian Federation, 119234
| | - Boris N Korvatovskiy
- Faculty of Biology, Lomonosov Moscow State University, Moscow, Russian Federation, 119234
| | - Marina G Strakhovskaya
- Faculty of Biology, Lomonosov Moscow State University, Moscow, Russian Federation, 119234.
| | - Zoja K Makhneva
- Federal Research Center "Pushchino Scientific Center for Biological Research of Russian Academy of Sciences", Pushchino, Russian Federation, 142290
| | - Maxim A Bol'shakov
- Federal Research Center "Pushchino Scientific Center for Biological Research of Russian Academy of Sciences", Pushchino, Russian Federation, 142290
| | - Vladimir Z Paschenko
- Faculty of Biology, Lomonosov Moscow State University, Moscow, Russian Federation, 119234
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7
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Accomasso D, Arslancan S, Cupellini L, Granucci G, Mennucci B. Ultrafast Excited-State Dynamics of Carotenoids and the Role of the S X State. J Phys Chem Lett 2022; 13:6762-6769. [PMID: 35852936 PMCID: PMC9340805 DOI: 10.1021/acs.jpclett.2c01555] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Accepted: 07/11/2022] [Indexed: 06/15/2023]
Abstract
Carotenoids are natural pigments with multiple roles in photosynthesis. They act as accessory pigments by absorbing light where chlorophyll absorption is low, and they quench the excitation energy of neighboring chlorophylls under high-light conditions. The function of carotenoids depends on their polyene-like structure, which controls their excited-state properties. After light absorption to their bright S2 state, carotenoids rapidly decay to the optically dark S1 state. However, ultrafast spectroscopy experiments have shown the signatures of another dark state, termed SX. Here we shed light on the ultrafast photophysics of lutein, a xanthophyll carotenoid, by explicitly simulating its nonadiabatic excited-state dynamics in solution. Our simulations confirm the involvement of SX in the relaxation toward S1 and reveal that it is formed through a change in the nature of the S2 state driven by the decrease in the bond length alternation coordinate of the carotenoid conjugated chain.
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Affiliation(s)
| | | | - Lorenzo Cupellini
- Dipartimento di Chimica e
Chimica Industriale, University of Pisa, via G. Moruzzi 13, 56124 Pisa, Italy
| | - Giovanni Granucci
- Dipartimento di Chimica e
Chimica Industriale, University of Pisa, via G. Moruzzi 13, 56124 Pisa, Italy
| | - Benedetta Mennucci
- Dipartimento di Chimica e
Chimica Industriale, University of Pisa, via G. Moruzzi 13, 56124 Pisa, Italy
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8
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Ultrafast laser spectroscopic studies on carotenoids in solution and on those bound to photosynthetic pigment-protein complexes. Methods Enzymol 2022; 674:1-51. [DOI: 10.1016/bs.mie.2022.03.055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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9
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Hughes E, Alric J, Yurkov V. Photosynthetic complexes and light-dependant electron transport chain in the aerobic anoxygenic phototroph Roseicyclus mahoneyensis and its spontaneous mutants. PHOTOSYNTHESIS RESEARCH 2020; 144:341-347. [PMID: 32248389 DOI: 10.1007/s11120-020-00744-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Accepted: 03/30/2020] [Indexed: 06/11/2023]
Abstract
Spontaneous photosynthetic mutants of the aerobic anoxygenic phototrophic bacterium Roseicyclus mahoneyensis, strain ML6 have been identified based on phenotypic differences and spectrophotometric analysis. ML6 contains a reaction centre (RC) with absorption peaks at 755, 800, and 870 nm, light harvesting (LH) complex 1 at 870 nm, and monomodal LH2 at 805 nm; the mutant ML6(B) has only the LH2; ML6(DB) has also lost the LH1; in ML6(BN9O), the LH2 is absent and concentrations of LH1 and RC are much lower than in the wild type. RCs were isolated and purified from ML6 and ML6(BN9O); LH1-RC from ML6; and LH2 from ML6, ML6(B), and ML6(DB). All protein subunits composing the complexes were found to be of typical size. Flash-induced difference spectra revealed ML6 has a fully functional photosynthetic apparatus under aerobic and microaerophilic conditions, and as is typical for AAP, there is no photosynthetic activity anaerobically. ML6(BN9O), while also functional photosynthetically aerobically, showed lower rates due to the lack of LH2 and decreased concentrations of LH1 and RC. ML6(B) and ML6(DB) showed no photoinduced electron transport. Action spectra of light-mediated reactions were also performed on ML6 and ML6(BN9O) to reveal that the majority of carotenoids are not involved in light harvesting. Finally, redox titrations were carried out on membranes of ML6 and ML6(BN9O) to confirm that midpoint redox potentials of the QA, RC-bound cytochrome, and P+ were similar in both strains. QA midpoint potential is + 65 mV, cytochrome is + 245 mV, and P+ is + 430 mV.
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Affiliation(s)
- Elizabeth Hughes
- Department of Microbiology, University of Manitoba, Winnipeg, Canada
| | - Jean Alric
- Photosynthesis and Environment, Aix Marseille Univ, CEA Cadarache, CNRS UMR7265, BIAM, 13108, Saint Paul-Lez-Durance, France
| | - Vladimir Yurkov
- Department of Microbiology, University of Manitoba, Winnipeg, Canada.
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Makhneva ZK, Ashikhmin AA, Bolshakov MA, Moskalenko AA. Carotenoids are Probably Involved in Singlet Oxygen Generation in the Membranes of Purple Photosynthetic Bacteria under Light Irradiation. Microbiology (Reading) 2020. [DOI: 10.1134/s0026261720010099] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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11
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Liu S, Daigger GT, Kang J, Zhang G. Effects of light intensity and photoperiod on pigments production and corresponding key gene expression of Rhodopseudomonas palustris in a photobioreactor system. BIORESOURCE TECHNOLOGY 2019; 294:122172. [PMID: 31606599 DOI: 10.1016/j.biortech.2019.122172] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Revised: 09/17/2019] [Accepted: 09/18/2019] [Indexed: 06/10/2023]
Abstract
Light intensity and photoperiod significantly affect Rhodopseudomonas palustris growth and pigments production and their optimization is necessary for pigment biosynthesis. In this study, the impacts of different light intensity and light/dark cycles were investigated on biomass, carotenoids, bacteriochlorophyll production, together with pollutant removal, in a photobioreactor system. Results showed that R. palustris had the highest carotenoids and bacteriochlorophyll productions with light intensity of 150 μmol-photons/m2/s and light/dark cycle of 4/2 (16 h/8h). The corresponding values were 1.94 mg/g-biomass and 1.17 mg/g-biomass, respectively. The effects of light/dark cycle on crtA and bchE gene expression in pigments biosynthesis were also studied. Mechanism analysis revealed that carotenoids and bacteriochlorophyll yields represented good synergistic effect, which was consistent with the up-regulation of crtA and bchE gene expressions under optimal light/dark cycle of 4/2.
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Affiliation(s)
- Shuli Liu
- School of Environmental and Municipal Engineering, North China University of Water Resources and Electric Power, Zhengzhou 450000, China; Henan Key Laboratory of Water Environment Simulation and Treatment, Zhengzhou 450046, China; Henan Engineering Research Center of Water Pollution and Soil Damage Remediation, Zhengzhou 450046, China.
| | - Glen T Daigger
- Civil and Environmental Engineering, University of Michigan, 2350 Hayward St, G.G. Brown Building, Ann Arbor, MI 48109, USA.
| | - Jia Kang
- School of Environmental and Municipal Engineering, North China University of Water Resources and Electric Power, Zhengzhou 450000, China; Henan Key Laboratory of Water Environment Simulation and Treatment, Zhengzhou 450046, China; Henan Engineering Research Center of Water Pollution and Soil Damage Remediation, Zhengzhou 450046, China
| | - Guangming Zhang
- School of Environment & Natural Resource, Renmin University of China, Beijing 100872, China.
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Mandal S, Espiritu E, Akram N, Lin S, Williams JC, Allen JP, Woodbury NW. Influence of the Electrochemical Properties of the Bacteriochlorophyll Dimer on Triplet Energy-Transfer Dynamics in Bacterial Reaction Centers. J Phys Chem B 2018; 122:10097-10107. [PMID: 30351114 DOI: 10.1021/acs.jpcb.8b07985] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Energetics, protein dynamics, and electronic coupling are the key factors in controlling both electron and energy transfer in photosynthetic bacterial reaction centers (RCs). Here, we examine the rates and mechanistic pathways of the P+HA- radical-pair charge recombination, triplet state formation, and subsequent triplet energy transfer from the triplet state of the bacteriochlorophyll dimer (P) to the carotenoid in a series of mutant RCs (L131LH + M160LH (D1), L131LH + M197FH (D2), and L131LH + M160LH + M197FH (T1)) of Rhodobacter sphaeroides. In these mutants, the electronic structure of P is perturbed and the P/P+ midpoint potential is systematically increased due to addition of hydrogen bonds between P and the introduced residues. High-resolution, broad-band, transient absorption spectroscopy on the femtosecond to microsecond timescale shows that the charge recombination rate increases and the triplet energy transfer rate decreases in these mutants relative to the wild type (WT). The increase of the charge recombination rate is correlated to the increase in the energy level of P+HA- and the increase in the P/P+ midpoint potential. On the other hand, the decrease in rate of triplet energy transfer in the mutants can be explained in terms of a lower energy of 3P and a shift in the electron spin density distribution in the bacteriochlorophylls of P. The triplet energy-transfer rate follows the order of WT > L131LH + M197FH > L131LH + M160LH > L131LH + M160LH + M197FH, both at room temperature and at 77 K. A pronounced temperature dependence of the rate is observed for all of the RC samples. The activation energy associated to this process is increased in the mutants relative to WT, consistent with a lower 3P energy due to the addition of hydrogen bonds between P and the introduced residues.
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14
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Uragami C, Saito K, Yoshizawa M, Molnár P, Hashimoto H. Unified analysis of optical absorption spectra of carotenoids based on a stochastic model. Arch Biochem Biophys 2018; 650:49-58. [DOI: 10.1016/j.abb.2018.04.021] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Revised: 04/06/2018] [Accepted: 04/30/2018] [Indexed: 11/26/2022]
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15
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Rodriguez-Concepcion M, Avalos J, Bonet ML, Boronat A, Gomez-Gomez L, Hornero-Mendez D, Limon MC, Meléndez-Martínez AJ, Olmedilla-Alonso B, Palou A, Ribot J, Rodrigo MJ, Zacarias L, Zhu C. A global perspective on carotenoids: Metabolism, biotechnology, and benefits for nutrition and health. Prog Lipid Res 2018; 70:62-93. [PMID: 29679619 DOI: 10.1016/j.plipres.2018.04.004] [Citation(s) in RCA: 457] [Impact Index Per Article: 76.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2018] [Revised: 04/16/2018] [Accepted: 04/18/2018] [Indexed: 12/22/2022]
Abstract
Carotenoids are lipophilic isoprenoid compounds synthesized by all photosynthetic organisms and some non-photosynthetic prokaryotes and fungi. With some notable exceptions, animals (including humans) do not produce carotenoids de novo but take them in their diets. In photosynthetic systems carotenoids are essential for photoprotection against excess light and contribute to light harvesting, but perhaps they are best known for their properties as natural pigments in the yellow to red range. Carotenoids can be associated to fatty acids, sugars, proteins, or other compounds that can change their physical and chemical properties and influence their biological roles. Furthermore, oxidative cleavage of carotenoids produces smaller molecules such as apocarotenoids, some of which are important pigments and volatile (aroma) compounds. Enzymatic breakage of carotenoids can also produce biologically active molecules in both plants (hormones, retrograde signals) and animals (retinoids). Both carotenoids and their enzymatic cleavage products are associated with other processes positively impacting human health. Carotenoids are widely used in the industry as food ingredients, feed additives, and supplements. This review, contributed by scientists of complementary disciplines related to carotenoid research, covers recent advances and provides a perspective on future directions on the subjects of carotenoid metabolism, biotechnology, and nutritional and health benefits.
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Affiliation(s)
| | - Javier Avalos
- Department of Genetics, Universidad de Sevilla, 41012 Seville, Spain
| | - M Luisa Bonet
- Laboratory of Molecular Biology, Nutrition and Biotechnology, Universitat de les Illes Balears, 07120 Palma de Mallorca, Spain; CIBER Fisiopatología de la Obesidad y Nutrición (CIBERobn), 07120 Palma de Mallorca, Spain; Institut d'Investigació Sanitària Illes Balears (IdISBa), 07120 Palma de Mallorca, Spain
| | - Albert Boronat
- Centre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, 08193 Barcelona, Spain; Department of Biochemistry and Molecular Biomedicine, Universitat de Barcelona, 08028 Barcelona, Spain
| | - Lourdes Gomez-Gomez
- Instituto Botánico, Universidad de Castilla-La Mancha, 02071 Albacete, Spain
| | - Damaso Hornero-Mendez
- Department of Food Phytochemistry, Instituto de la Grasa (IG-CSIC), 41013 Seville, Spain
| | - M Carmen Limon
- Department of Genetics, Universidad de Sevilla, 41012 Seville, Spain
| | - Antonio J Meléndez-Martínez
- Food Color & Quality Laboratory, Area of Nutrition & Food Science, Universidad de Sevilla, 41012 Seville, Spain
| | | | - Andreu Palou
- Laboratory of Molecular Biology, Nutrition and Biotechnology, Universitat de les Illes Balears, 07120 Palma de Mallorca, Spain; CIBER Fisiopatología de la Obesidad y Nutrición (CIBERobn), 07120 Palma de Mallorca, Spain; Institut d'Investigació Sanitària Illes Balears (IdISBa), 07120 Palma de Mallorca, Spain
| | - Joan Ribot
- Laboratory of Molecular Biology, Nutrition and Biotechnology, Universitat de les Illes Balears, 07120 Palma de Mallorca, Spain; CIBER Fisiopatología de la Obesidad y Nutrición (CIBERobn), 07120 Palma de Mallorca, Spain; Institut d'Investigació Sanitària Illes Balears (IdISBa), 07120 Palma de Mallorca, Spain
| | - Maria J Rodrigo
- Institute of Agrochemistry and Food Technology (IATA-CSIC), 46980 Valencia, Spain
| | - Lorenzo Zacarias
- Institute of Agrochemistry and Food Technology (IATA-CSIC), 46980 Valencia, Spain
| | - Changfu Zhu
- Department of Plant Production and Forestry Science, Universitat de Lleida-Agrotecnio, 25198 Lleida, Spain
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16
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Sipka G, Maróti P. Photoprotection in intact cells of photosynthetic bacteria: quenching of bacteriochlorophyll fluorescence by carotenoid triplets. PHOTOSYNTHESIS RESEARCH 2018; 136:17-30. [PMID: 29064080 DOI: 10.1007/s11120-017-0434-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2017] [Accepted: 08/16/2017] [Indexed: 06/07/2023]
Abstract
Upon high light excitation in photosynthetic bacteria, various triplet states of pigments can accumulate leading to harmful effects. Here, the generation and lifetime of flash-induced carotenoid triplets (3Car) have been studied by observation of the quenching of bacteriochlorophyll (BChl) fluorescence in different strains of photosynthetic bacteria including Rvx. gelatinosus (anaerobic and semianaerobic), Rsp. rubrum, Thio. roseopersicina, Rba. sphaeroides 2.4.1 and carotenoid- and cytochrome-deficient mutants Rba. sphaeroides Ga, R-26, and cycA, respectively. The following results were obtained: (1) 3Car quenching is observed during and not exclusively after the photochemical rise of the fluorescence yield of BChl indicating that the charge separation in the reaction center (RC) and the carotenoid triplet formation are not consecutive but parallel processes. (2) The photoprotective function of 3Car is not limited to the RC only and can be described by a model in which the carotenoids are distributed in the lake of the BChl pigments. (3) The observed lifetime of 3Car in intact cells is the weighted average of the lifetimes of the carotenoids with various numbers of conjugated double bonds in the bacterial strain. (4) The lifetime of 3Car measured in the light is significantly shorter (1-2 μs) than that measured in the dark (2-10 μs). The difference reveals the importance of the dynamics of 3Car before relaxation. The results will be discussed not only in terms of energy levels of the 3Car but also in terms of the kinetics of transitions among different sublevels in the excited triplet state of the carotenoid.
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Affiliation(s)
- Gábor Sipka
- Department of Medical Physics, University of Szeged, Rerrich Béla tér 1, Szeged, 6720, Hungary
- Institute of Plant Biology, Biological Research Center, Hungarian Academy of Sciences, Szeged, 6726, Hungary
| | - Péter Maróti
- Department of Medical Physics, University of Szeged, Rerrich Béla tér 1, Szeged, 6720, Hungary.
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17
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Mandal S, Carey AM, Locsin J, Gao BR, Williams JC, Allen JP, Lin S, Woodbury NW. Mechanism of Triplet Energy Transfer in Photosynthetic Bacterial Reaction Centers. J Phys Chem B 2017; 121:6499-6510. [DOI: 10.1021/acs.jpcb.7b03373] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Sarthak Mandal
- Center
for Innovations in Medicine, The Biodesign Institute at ASU, Arizona State University, Tempe, Arizona 85287, United States
| | - Anne-Marie Carey
- Center
for Innovations in Medicine, The Biodesign Institute at ASU, Arizona State University, Tempe, Arizona 85287, United States
| | - Joshua Locsin
- Center
for Innovations in Medicine, The Biodesign Institute at ASU, Arizona State University, Tempe, Arizona 85287, United States
| | | | - JoAnn C. Williams
- School
of Molecular Sciences, Arizona State University, Tempe, Arizona 85287−1604, United States
| | - James P. Allen
- School
of Molecular Sciences, Arizona State University, Tempe, Arizona 85287−1604, United States
| | - Su Lin
- Center
for Innovations in Medicine, The Biodesign Institute at ASU, Arizona State University, Tempe, Arizona 85287, United States
- School
of Molecular Sciences, Arizona State University, Tempe, Arizona 85287−1604, United States
| | - Neal W. Woodbury
- Center
for Innovations in Medicine, The Biodesign Institute at ASU, Arizona State University, Tempe, Arizona 85287, United States
- School
of Molecular Sciences, Arizona State University, Tempe, Arizona 85287−1604, United States
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18
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Bible AN, Fletcher SJ, Pelletier DA, Schadt CW, Jawdy SS, Weston DJ, Engle NL, Tschaplinski T, Masyuko R, Polisetti S, Bohn PW, Coutinho TA, Doktycz MJ, Morrell-Falvey JL. A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization. Front Microbiol 2016; 7:491. [PMID: 27148182 PMCID: PMC4834302 DOI: 10.3389/fmicb.2016.00491] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2016] [Accepted: 03/24/2016] [Indexed: 11/13/2022] Open
Abstract
The complex interactions between plants and their microbiome can have a profound effect on the health and productivity of the plant host. A better understanding of the microbial mechanisms that promote plant health and stress tolerance will enable strategies for improving the productivity of economically important plants. Pantoea sp. YR343 is a motile, rod-shaped bacterium isolated from the roots of Populus deltoides that possesses the ability to solubilize phosphate and produce the phytohormone indole-3-acetic acid (IAA). Pantoea sp. YR343 readily colonizes plant roots and does not appear to be pathogenic when applied to the leaves or roots of selected plant hosts. To better understand the molecular mechanisms involved in plant association and rhizosphere survival by Pantoea sp. YR343, we constructed a mutant in which the crtB gene encoding phytoene synthase was deleted. Phytoene synthase is responsible for converting geranylgeranyl pyrophosphate to phytoene, an important precursor to the production of carotenoids. As predicted, the ΔcrtB mutant is defective in carotenoid production, and shows increased sensitivity to oxidative stress. Moreover, we find that the ΔcrtB mutant is impaired in biofilm formation and production of IAA. Finally we demonstrate that the ΔcrtB mutant shows reduced colonization of plant roots. Taken together, these data suggest that carotenoids are important for plant association and/or rhizosphere survival in Pantoea sp. YR343.
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Affiliation(s)
- Amber N. Bible
- Biosciences Division, Oak Ridge National LaboratoryOak Ridge, TN, USA
| | - Sarah J. Fletcher
- Biosciences Division, Oak Ridge National LaboratoryOak Ridge, TN, USA
| | - Dale A. Pelletier
- Biosciences Division, Oak Ridge National LaboratoryOak Ridge, TN, USA
| | | | - Sara S. Jawdy
- Biosciences Division, Oak Ridge National LaboratoryOak Ridge, TN, USA
| | - David J. Weston
- Biosciences Division, Oak Ridge National LaboratoryOak Ridge, TN, USA
| | - Nancy L. Engle
- Biosciences Division, Oak Ridge National LaboratoryOak Ridge, TN, USA
| | | | - Rachel Masyuko
- Department of Chemical and Biomolecular Engineering, University of Notre DameNotre Dame, IN, USA
| | - Sneha Polisetti
- Department of Chemical and Biomolecular Engineering, University of Notre DameNotre Dame, IN, USA
| | - Paul W. Bohn
- Department of Chemical and Biomolecular Engineering, University of Notre DameNotre Dame, IN, USA
| | - Teresa A. Coutinho
- Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of PretoriaPretoria, South Africa
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19
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Abstract
Carotenoids are ubiquitous and essential pigments in photosynthesis. They absorb in the blue-green region of the solar spectrum and transfer the absorbed energy to (bacterio-)chlorophylls, and so expand the wavelength range of light that is able to drive photosynthesis. This is an example of singlet-singlet energy transfer, and so carotenoids serve to enhance the overall efficiency of photosynthetic light reactions. Carotenoids also act to protect photosynthetic organisms from the harmful effects of excess exposure to light. Triplet-triplet energy transfer from chlorophylls to carotenoids plays a key role in this photoprotective reaction. In the light-harvesting pigment-protein complexes from purple photosynthetic bacteria and chlorophytes, carotenoids have an additional role of structural stabilization of those complexes. In this article we review what is currently known about how carotenoids discharge these functions. The molecular architecture of photosynthetic systems will be outlined first to provide a basis from which to describe carotenoid photochemistry, which underlies most of their important functions in photosynthesis.
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Affiliation(s)
- Hideki Hashimoto
- The Osaka City University Advanced Research Institute for Natural Science and Technology (OCARINA), Osaka City University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka, 558-8585, Japan.
- Department of Physics, Graduate School of Science, Osaka City University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka, 558-8585, Japan.
| | - Chiasa Uragami
- Department of Physics, Graduate School of Science, Osaka City University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka, 558-8585, Japan
| | - Richard J Cogdell
- Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QQ, Scotland, UK
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20
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Frigaard NU. Biotechnology of Anoxygenic Phototrophic Bacteria. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2016; 156:139-154. [DOI: 10.1007/10_2015_5006] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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21
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Natural and artificial light-harvesting systems utilizing the functions of carotenoids. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C-PHOTOCHEMISTRY REVIEWS 2015. [DOI: 10.1016/j.jphotochemrev.2015.07.004] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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22
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Gan F, Bryant DA. Adaptive and acclimative responses of cyanobacteria to far-red light. Environ Microbiol 2015; 17:3450-65. [DOI: 10.1111/1462-2920.12992] [Citation(s) in RCA: 112] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2015] [Revised: 07/09/2015] [Accepted: 07/17/2015] [Indexed: 01/18/2023]
Affiliation(s)
- Fei Gan
- Department of Biochemistry and Molecular Biology; The Pennsylvania State University; University Park PA 16802 USA
| | - Donald A. Bryant
- Department of Biochemistry and Molecular Biology; The Pennsylvania State University; University Park PA 16802 USA
- Department of Chemistry and Biochemistry; Montana State University; Bozeman MT 59717 USA
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23
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Horibe T, Qian P, Hunter CN, Hashimoto H. Stark absorption spectroscopy on the carotenoids bound to B800-820 and B800-850 type LH2 complexes from a purple photosynthetic bacterium, Phaeospirillum molischianum strain DSM120. Arch Biochem Biophys 2015; 572:158-166. [PMID: 25536050 DOI: 10.1016/j.abb.2014.12.015] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2014] [Revised: 12/10/2014] [Accepted: 12/12/2014] [Indexed: 11/16/2022]
Abstract
Stark absorption spectroscopy was applied to clarify the structural differences between carotenoids bound to the B800-820 and B800-850 LH2 complexes from a purple photosynthetic bacterium Phaeospirillum (Phs.) molischianum DSM120. The former complex is produced when the bacteria are grown under stressed conditions of low temperature and dim light. These two LH2 complexes bind carotenoids with similar composition, 10% lycopene and 80% rhodopin, each with the same number of conjugated CC double bonds (n=11). Quantitative classical and semi-quantum chemical analyses of Stark absorption spectra recorded in the carotenoid absorption region reveal that the absolute values of the difference dipole moments |Δμ| have substantial differences (2 [D/f]) for carotenoids bound to either B800-820 or B800-850 complexes. The origin of this striking difference in the |Δμ| values was analyzed using the X-ray crystal structure of the B800-850 LH2 complex from Phs. molischianum DSM119. Semi-empirical molecular orbital calculations predict structural deformations of the major carotenoid, rhodopin, bound within the B800-820 complex. We propose that simultaneous rotations around neighboring CC and CC bonds account for the differences in the 2 [D/f] of the |Δμ| value. The plausible position of the rotation is postulated to be located around C21-C24 bonds of rhodopin.
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Affiliation(s)
- Tomoko Horibe
- Graduate School of Science, Osaka City University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka 558-8585, Japan
| | - Pu Qian
- Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, United Kingdom
| | - C Neil Hunter
- Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, United Kingdom
| | - Hideki Hashimoto
- Graduate School of Science, Osaka City University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka 558-8585, Japan; The Osaka City University Advanced Research Institute for Natural Science and Technology (OCARINA), 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka 558-8585, Japan.
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24
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Upadhyayula S, Nuñez V, Espinoza EM, Larsen JM, Bao D, Shi D, Mac JT, Anvari B, Vullev VI. Photoinduced dynamics of a cyanine dye: parallel pathways of non-radiative deactivation involving multiple excited-state twisted transients. Chem Sci 2015; 6:2237-2251. [PMID: 29449923 PMCID: PMC5701728 DOI: 10.1039/c4sc02881c] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2014] [Accepted: 02/09/2015] [Indexed: 12/11/2022] Open
Abstract
Cyanine dyes are broadly used for fluorescence imaging and other photonic applications. 3,3'-Diethylthiacyanine (THIA) is a cyanine dye composed of two identical aromatic heterocyclic moieties linked with a single methine, -CH[double bond, length as m-dash]. The torsional degrees of freedom around the methine bonds provide routes for non-radiative decay, responsible for the inherently low fluorescence quantum yields. Using transient absorption spectroscopy, we determined that upon photoexcitation, the excited state relaxes along two parallel pathways producing three excited-state transients that undergo internal conversion to the ground state. The media viscosity impedes the molecular modes of ring rotation and preferentially affects one of the pathways of non-radiative decay, exerting a dominant effect on the emission properties of THIA. Concurrently, the polarity affects the energy of the transients involved in the decay pathways and further modulates the kinetics of non-radiative deactivation.
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Affiliation(s)
- Srigokul Upadhyayula
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
- Department of Biochemistry , University of California , Riverside , CA 92521 , USA
| | - Vicente Nuñez
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
| | - Eli M Espinoza
- Department of Chemistry , University of California , Riverside , CA 92521 , USA
| | - Jillian M Larsen
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
| | - Duoduo Bao
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
| | - Dewen Shi
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
| | - Jenny T Mac
- Department of Biochemistry , University of California , Riverside , CA 92521 , USA
| | - Bahman Anvari
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
| | - Valentine I Vullev
- Department of Bioengineering , University of California , Riverside , CA 92521 , USA .
- Department of Biochemistry , University of California , Riverside , CA 92521 , USA
- Department of Chemistry , University of California , Riverside , CA 92521 , USA
- Materials Science and Engineering Program , University of California , Riverside , CA 92521 , USA
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25
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Qin X, Wang W, Chang L, Chen J, Wang P, Zhang J, He Y, Kuang T, Shen JR. Isolation and characterization of a PSI-LHCI super-complex and its sub-complexes from a siphonaceous marine green alga, Bryopsis Corticulans. PHOTOSYNTHESIS RESEARCH 2015; 123:61-76. [PMID: 25214185 DOI: 10.1007/s11120-014-0039-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2014] [Accepted: 09/03/2014] [Indexed: 05/24/2023]
Abstract
A novel super-complex of photosystem I (PSI)-light-harvesting complex I (LHCI) was isolated from a siphonaceous marine green alga, Bryopsis corticulans. The super-complex contained 9-10 Lhca antennas as external LHCI bound to the core complex. The super-complex was further disintegrated into PSI core and LHCI sub-complexes, and analysis of the pigment compositions by high-performance liquid chromatography revealed unique characteristics of the B. corticulans PSI in that one PSI core contained around 14 α-carotenes and 1-2 ε-carotenes. This is in sharp contrast to the PSI core from higher plants and most cyanobacteria where only β-carotenes were present, and is the first report for an α-carotene-type PSI core complex among photosynthetic eukaryotes, suggesting a structural flexibility of the PSI core. Lhca antennas from B. corticulans contained seven kinds of carotenoids (siphonaxanthin, all-trans neoxanthin, 9'-cis neoxanthin, violaxanthin, siphonein, ε-carotene, and α-carotene) and showed a high carotenoid:chlorophyll ratio of around 7.5:13. PSI-LHCI super-complex and PSI core showed fluorescence emission peaks at 716 and 718 nm at 77 K, respectively; whereas two Lhca oligomers had fluorescence peaks at 681 and 684 nm, respectively. By comparison with spinach PSI preparations, it was found that B. corticulans PSI had less red chlorophylls, most of them are present in the core complex but not in the outer light-harvesting systems. These characteristics may contribute to the fine tuning of the energy transfer network, and to acclimate to the ever-changing light conditions under which the unique green alga inhabits.
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Affiliation(s)
- Xiaochun Qin
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China,
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26
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Hashimoto H, Sugisaki M, Yoshizawa M. Ultrafast time-resolved vibrational spectroscopies of carotenoids in photosynthesis. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2014; 1847:69-78. [PMID: 25223589 DOI: 10.1016/j.bbabio.2014.09.001] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2014] [Revised: 08/22/2014] [Accepted: 09/05/2014] [Indexed: 11/16/2022]
Abstract
This review discusses the application of time-resolved vibrational spectroscopies to the studies of carotenoids in photosynthesis. The focus is on the ultrafast time regime and the study of photophysics and photochemistry of carotenoids by femtosecond time-resolved stimulated Raman and four-wave mixing spectroscopies. This article is part of a Special Issue entitled: Vibrational spectroscopies and bioenergetic systems.
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Affiliation(s)
- Hideki Hashimoto
- The Osaka City University Advanced Research Institute for Natural Science and Technology (OCARINA), Osaka City University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka 558-8585, Japan; Department of Physics, Graduate School of Science, Osaka City University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka 558-8585, Japan.
| | - Mitsuru Sugisaki
- Department of Physics, Graduate School of Science, Osaka City University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka 558-8585, Japan
| | - Masayuki Yoshizawa
- Department of Physics, Graduate School of Science, Tohoku University, Aramaki-aza-aoba, Aoba-ku, Sendai 980-8578, Japan
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27
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Sui X, Kiser PD, von Lintig J, Palczewski K. Structural basis of carotenoid cleavage: from bacteria to mammals. Arch Biochem Biophys 2013; 539:203-13. [PMID: 23827316 PMCID: PMC3818509 DOI: 10.1016/j.abb.2013.06.012] [Citation(s) in RCA: 96] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2013] [Revised: 06/12/2013] [Accepted: 06/13/2013] [Indexed: 10/26/2022]
Abstract
Carotenoids and their metabolic derivatives serve critical functions in both prokaryotic and eukaryotic cells, including pigmentation, photoprotection and photosynthesis as well as cell signaling. These organic compounds are also important for visual function in vertebrate and non-vertebrate organisms. Enzymatic transformations of carotenoids to various apocarotenoid products are catalyzed by a family of evolutionarily conserved, non-heme iron-containing enzymes named carotenoid cleavage oxygenases (CCOs). Studies have revealed that CCOs are critically involved in carotenoid homeostasis and essential for the health of organisms including humans. These enzymes typically display a high degree of regio- and stereo-selectivity, acting on specific positions of the polyene backbone located in their substrates. By oxidatively cleaving and/or isomerizing specific double bonds, CCOs generate a variety of apocarotenoid isomer products. Recent structural studies have helped illuminate the mechanisms by which CCOs mobilize their lipophilic substrates from biological membranes to perform their characteristic double bond cleavage and/or isomerization reactions. In this review, we aim to integrate structural and biochemical information about CCOs to provide insights into their catalytic mechanisms.
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Affiliation(s)
- Xuewu Sui
- Department of Pharmacology, School of Medicine, Case Western Reserve University, 2109 Adelbert Rd, Cleveland, OH 44106-4965, USA
| | - Philip D. Kiser
- Department of Pharmacology, School of Medicine, Case Western Reserve University, 2109 Adelbert Rd, Cleveland, OH 44106-4965, USA
| | - Johannes von Lintig
- Department of Pharmacology, School of Medicine, Case Western Reserve University, 2109 Adelbert Rd, Cleveland, OH 44106-4965, USA
| | - Krzysztof Palczewski
- Department of Pharmacology, School of Medicine, Case Western Reserve University, 2109 Adelbert Rd, Cleveland, OH 44106-4965, USA
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28
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Benniston AC, Yang S, Lemmetyinen H, Tkachenko NV. Complexation Enhanced Excited-State Deactivation by Lithium Ion Coordination to a Borondipyrromethene (Bodipy) Donor-Bridge-Acceptor Dyad. European J Org Chem 2013. [DOI: 10.1002/ejoc.201300867] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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29
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Aremu AO, Bairu MW, Szüčová L, Finnie JF, Van Staden J. The role of meta-topolins on the photosynthetic pigment profiles and foliar structures of micropropagated 'Williams' bananas. JOURNAL OF PLANT PHYSIOLOGY 2012; 169:1530-41. [PMID: 22883630 DOI: 10.1016/j.jplph.2012.06.006] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2012] [Revised: 06/20/2012] [Accepted: 06/22/2012] [Indexed: 05/20/2023]
Abstract
The effect of five topolins (meta-Topolin=mT; meta-Topolin riboside=mTR; meta-Methoxy topolin=MemT; meta-Methoxy topolin riboside=MemTR and 6-(meta-methoxy)-9-(tetrahydropyran-2-yl)-topolin=MemTTHP) on the photosynthetic pigments and leaf structures of micropropagated 'Williams' bananas was compared with the commonly used benzyladenine (BA). Surface-decontaminated explants were cultured for 70 d on modified Murashige and Skoog (MS) basal medium and supplemented with 10, 20 or 30μM cytokinins (CKs). At 10 d intervals, the photosynthetic pigments were quantified via spectrophotometric methods for 7 cycles. Generally, the maximum pigment content was attained between 40 and 50 d. The control plantlets had the highest pigment content (1150μg/g FW). Among the CKs, 10μM MemTTHP generally had the best pigment stimulatory effect at the same period. After 40 d, scanning electron microscopy (SEM) of the foliar surface showed that the stomata density was highest in 10μM MemTTHP-treated and lowest in 10μM MemTR-treated plantlets. The stomatal structure and pore area also varied with the type and concentration of CK added. Generally, prolonging culture duration as well as increasing CK concentrations reduced the pigment content. However, the drastic breakdown in chlorophyll pigments beyond 50 d was slightly inhibited by the presence of mT, mTR, MemTTHP and BA compared to the control. The CK-treated plantlets at equimolar concentration had comparable chlorophyll a/b and total chlorophyll/carotenoid ratios after 10 d; probably as an adaptive measure. At the end of the current study, 10μM mT and mTR plantlets remained green as reflected by the higher total chlorophyll/carotenoid ratio as well as by the visual observations. A well-developed photosynthetic apparatus enhances the survival of in vitro plantlets during the acclimatization stage. Current findings provide some insight into the role of meta-topolins on photosynthetic parameters in vitro, which inevitably partly contributed to the better acclimatization capability of meta-topolin-regenerants.
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Affiliation(s)
- Adeyemi O Aremu
- Research Centre for Plant Growth and Development, School of Life Sciences, University of KwaZulu-Natal Pietermaritzburg, Private Bag X01, Scottsville 3209, South Africa
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30
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Liu L, Zhan W. Molecular photovoltaic system based on fullerenes and carotenoids co-assembled in lipid/alkanethiol hybrid bilayers. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2012; 28:4877-4882. [PMID: 22385076 DOI: 10.1021/la204642a] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
A hybrid molecular photovoltaic system, based on fullerene C(60) and lutein (a natural photosynthetic carotenoid pigment) that are assembled in a phospholipid/alkanethiol bilayer matrix, is described here. The assembly and photoconversion behaviors of such a system were studied by UV-vis spectroscopy, cyclic voltammetry, impedance spectroscopy, photoelectrochemical action spectroscopy, and photocurrent generation. While lutein itself is inefficient in generating photocurrent, it can strongly modulate photocurrents produced by fullerenes when coassembled in the lipid bilayer matrix presumably via photoinduced electron transfer. Our results thus provide a successful example of combining both synthetic and natural photoactive components in building molecular photovoltaic systems.
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Affiliation(s)
- Lixia Liu
- Department of Chemistry and Biochemistry, Auburn University, Auburn, Alabama 36849, United States
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31
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Stepanenko I, Kompanetz V, Makhneva Z, Chekalin S, Moskalenko A, Razjivin A. Transient Absorption Study of Two-Photon Excitation Mechanism in the LH2 Complex from Purple Bacterium Rhodobacter sphaeroides. J Phys Chem B 2012; 116:2886-90. [DOI: 10.1021/jp2033214] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ilya Stepanenko
- A. N. Belozersky Institute of
Physico-Chemical Biology, Moscow State University, Leninskie Gory, 119992 Moscow, Russia
| | - Viktor Kompanetz
- Institute of Spectroscopy RAS, 142190 Troitsk, Moscow Region, Russia
| | - Zoya Makhneva
- Institute of Fundamental Problems of Biology RAS, 142290 Pushchino, Moscow Region,
Russia
| | - Sergey Chekalin
- Institute of Spectroscopy RAS, 142190 Troitsk, Moscow Region, Russia
| | - Andrei Moskalenko
- Institute of Fundamental Problems of Biology RAS, 142290 Pushchino, Moscow Region,
Russia
| | - Andrei Razjivin
- A. N. Belozersky Institute of
Physico-Chemical Biology, Moscow State University, Leninskie Gory, 119992 Moscow, Russia
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Paschenko VZ, Gorokhov VV, Korvatovskiy BN, Bocharov EA, Knox PP, Sarkisov OM, Theiss C, Eichler HJ, Renger G, Rubin AB. The rate of Q(x)→Q(y) relaxation in bacteriochlorophylls of reaction centers from Rhodobacter sphaeroides determined by kinetics of the ultrafast carotenoid bandshift. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2012; 1817:1399-406. [PMID: 22366029 DOI: 10.1016/j.bbabio.2012.02.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2011] [Revised: 01/23/2012] [Accepted: 02/07/2012] [Indexed: 10/14/2022]
Abstract
Transient absorption changes induced by excitation of isolated reaction centers (RCs) from Rhodobacter sphaeroides with 600nm laser pulses of 20fs (full width at half maximum) were monitored in the wavelength region of 420-560nm. The spectral features of the spectrum obtained are characteristic for an electrochromic band shift of the single carotenoid (Car) molecule spheroidene, which is an integral constituent of these RCs. This effect is assigned to an electrochromic bandshift of Car due to the local electric field of the dipole moment formed by electronic excitation of bacteriochlorophyll (BChl) molecule(s) in the neighborhood of Car. Based on the known distances between the pigments, the monomeric BChl (B(B)) in the inactive B-branch is inferred to dominate this effect. The excitation of B(B) at 600nm leads to a transition into the S(2) state (Q(x) band), which is followed by rapid internal conversion to the S(1) state (Q(y) band), thus leading to a change of strength and orientation of the dipole moment, i.e., of the electric field acting on the Car molecule. Therefore, the time course of the electrochromic bandshift reflects the rate of the internal conversion from S(2) to S(1) of B(B). The evaluation of the kinetics leads to a value of 30fs for this relaxation process. This article is part of a Special Issue entitled: Photosynthesis Research for Sustainability: from Natural to Artificial.
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Affiliation(s)
- Vladimir Z Paschenko
- Department of Biophysics, Biology Faculty of the M.V. Lomonosov Moscow State University, Moscow, Russia.
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Rathgeber C, Alric J, Hughes E, Verméglio A, Yurkov V. The photosynthetic apparatus and photoinduced electron transfer in the aerobic phototrophic bacteria Roseicyclus mahoneyensis and Porphyrobacter meromictius. PHOTOSYNTHESIS RESEARCH 2012; 110:193-203. [PMID: 22228440 DOI: 10.1007/s11120-011-9718-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2011] [Accepted: 12/16/2011] [Indexed: 05/31/2023]
Abstract
Photosynthetic electron transfer has been examined in whole cells, isolated membranes and in partially purified reaction centers (RCs) of Roseicyclus mahoneyensis, strain ML6 and Porphyrobacter meromictius, strain ML31, two species of obligate aerobic anoxygenic phototrophic bacteria. Photochemical activity in strain ML31 was observed aerobically, but the photosynthetic apparatus was not functional under anaerobic conditions. In strain ML6 low levels of photochemistry were measured anaerobically, possibly due to incomplete reduction of the primary electron acceptor (Q(A)) prior to light excitation, however, electron transfer occurred optimally under low oxygen conditions. Photoinduced electron transfer involves a soluble cytochrome c in both strains, and an additional reaction center (RC)-bound cytochrome c in ML6. The redox properties of the primary electron donor (P) and Q(A) of ML31 are similar to those previously determined for other aerobic phototrophs, with midpoint redox potentials of +463 mV and -25 mV, respectively. Strain ML6 showed a very narrow range of ambient redox potentials appropriate for photosynthesis, with midpoint redox potentials of +415 mV for P and +94 mV for Q(A). Cytoplasm soluble and photosynthetic complex bound cytochromes were characterized in terms of apparent molecular mass. Fluorescence excitation spectra revealed that abundant carotenoids not intimately associated with the RC are not involved in photosynthetic energy conservation.
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Affiliation(s)
- Christopher Rathgeber
- Department of Microbiology, The University of Manitoba, 422 Buller Building, Winnipeg, MB, R3T 2N2, Canada
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Andrulis ED. Theory of the origin, evolution, and nature of life. Life (Basel) 2011; 2:1-105. [PMID: 25382118 PMCID: PMC4187144 DOI: 10.3390/life2010001] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2011] [Revised: 12/10/2011] [Accepted: 12/13/2011] [Indexed: 12/22/2022] Open
Abstract
Life is an inordinately complex unsolved puzzle. Despite significant theoretical progress, experimental anomalies, paradoxes, and enigmas have revealed paradigmatic limitations. Thus, the advancement of scientific understanding requires new models that resolve fundamental problems. Here, I present a theoretical framework that economically fits evidence accumulated from examinations of life. This theory is based upon a straightforward and non-mathematical core model and proposes unique yet empirically consistent explanations for major phenomena including, but not limited to, quantum gravity, phase transitions of water, why living systems are predominantly CHNOPS (carbon, hydrogen, nitrogen, oxygen, phosphorus, and sulfur), homochirality of sugars and amino acids, homeoviscous adaptation, triplet code, and DNA mutations. The theoretical framework unifies the macrocosmic and microcosmic realms, validates predicted laws of nature, and solves the puzzle of the origin and evolution of cellular life in the universe.
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Affiliation(s)
- Erik D Andrulis
- Department of Molecular Biology and Microbiology, Case Western Reserve University School of Medicine, Wood Building, W212, Cleveland, OH 44106, USA.
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You ZQ, Hsu CP. Ab inito study on triplet excitation energy transfer in photosynthetic light-harvesting complexes. J Phys Chem A 2011; 115:4092-100. [PMID: 21410281 DOI: 10.1021/jp200200x] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We have studied the triplet energy transfer (TET) for photosynthetic light-harvesting complexes, the bacterial light-harvesting complex II (LH2) of Rhodospirillum molischianum and Rhodopseudomonas acidophila, and the peridinin-chlorophyll a protein (PCP) from Amphidinium carterae. The electronic coupling factor was calculated with the recently developed fragment spin difference scheme (You and Hsu, J. Chem. Phys. 2010, 133, 074105), which is a general computational scheme that yields the overall coupling under the Hamiltonian employed. The TET rates were estimated based on the couplings obtained. For all light-harvesting complexes studied, there exist nanosecond triplet energy transfer from the chlorophylls to the carotenoids. This result supports a direct triplet quenching mechanism for the photoprotection function of carotenoids. The TET rates are similar for a broad range of carotenoid triplet state energy, which implies a general and robust TET quenching role for carotenoids in photosynthesis. This result is also consistent with the weak dependence of TET kinetics on the type or the number of π conjugation lengths in the carotenoids and their analogues reported in the literature. We have also explored the possibility of forming triplet excitons in these complexes. In B850 of LH2 or the peridinin cluster in PCP, it is unlikely to have triplet exciton since the energy differences of any two neighboring molecules are likely to be much larger than their TET couplings. Our results provide theoretical limits to the possible photophysics in the light-harvesting complexes.
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Affiliation(s)
- Zhi-Qiang You
- Taiwan International Graduate Program, Academia Sinica, 128 Section 2 Academia Road, Nankang, Taipei 11529, Taiwan
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You ZQ, Hsu CP. The fragment spin difference scheme for triplet-triplet energy transfer coupling. J Chem Phys 2010; 133:074105. [DOI: 10.1063/1.3467882] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Csotonyi JT, Swiderski J, Stackebrandt E, Yurkov V. A new extreme environment for aerobic anoxygenic phototrophs: biological soil crusts. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2010; 675:3-14. [PMID: 20532732 DOI: 10.1007/978-1-4419-1528-3_1] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Biological soil crusts improve the health of arid or semiarid soils by enhancing water content, nutrient relations and mechanical stability, facilitated largely by phototrophic microorganisms. Until recently, only oxygenic phototrophs were known from soil crusts. A recent study has demonstrated the presence of aerobic representatives of Earth's second major photosynthetic clade, the evolutionarily basal anoxygenic phototrophs. Three Canadian soil crust communities yielded pink and orange aerobic anoxygenic phototrophic strains possessing the light-harvesting pigment bacteriochlorophyll a. At relative abundances of 0.1-5.9% of the cultivable bacterial community, they were comparable in density to aerobic phototrophs in other documented habitats. 16S rDNA sequence analysis revealed the isolates to be related to Methylobacterium, Belnapia, Muricoccus and Sphingomonas. This result adds a new type of harsh habitat, dry soil environments, to the environments known to support aerobic anoxygenic phototrophs.
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Affiliation(s)
- Julius T Csotonyi
- Department of Microbiology, University of Manitoba, Winnipeg, MB R3T 2N2, Canada.
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Phylogenetic and evolutionary patterns in microbial carotenoid biosynthesis are revealed by comparative genomics. PLoS One 2010; 5:e11257. [PMID: 20582313 PMCID: PMC2889829 DOI: 10.1371/journal.pone.0011257] [Citation(s) in RCA: 80] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2010] [Accepted: 05/28/2010] [Indexed: 11/19/2022] Open
Abstract
BACKGROUND Carotenoids are multifunctional, taxonomically widespread and biotechnologically important pigments. Their biosynthesis serves as a model system for understanding the evolution of secondary metabolism. Microbial carotenoid diversity and evolution has hitherto been analyzed primarily from structural and biosynthetic perspectives, with the few phylogenetic analyses of microbial carotenoid biosynthetic proteins using either used limited datasets or lacking methodological rigor. Given the recent accumulation of microbial genome sequences, a reappraisal of microbial carotenoid biosynthetic diversity and evolution from the perspective of comparative genomics is warranted to validate and complement models of microbial carotenoid diversity and evolution based upon structural and biosynthetic data. METHODOLOGY/PRINCIPAL FINDINGS Comparative genomics were used to identify and analyze in silico microbial carotenoid biosynthetic pathways. Four major phylogenetic lineages of carotenoid biosynthesis are suggested composed of: (i) Proteobacteria; (ii) Firmicutes; (iii) Chlorobi, Cyanobacteria and photosynthetic eukaryotes; and (iv) Archaea, Bacteroidetes and two separate sub-lineages of Actinobacteria. Using this phylogenetic framework, specific evolutionary mechanisms are proposed for carotenoid desaturase CrtI-family enzymes and carotenoid cyclases. Several phylogenetic lineage-specific evolutionary mechanisms are also suggested, including: (i) horizontal gene transfer; (ii) gene acquisition followed by differential gene loss; (iii) co-evolution with other biochemical structures such as proteorhodopsins; and (iv) positive selection. CONCLUSIONS/SIGNIFICANCE Comparative genomics analyses of microbial carotenoid biosynthetic proteins indicate a much greater taxonomic diversity then that identified based on structural and biosynthetic data, and divides microbial carotenoid biosynthesis into several, well-supported phylogenetic lineages not evident previously. This phylogenetic framework is applicable to understanding the evolution of specific carotenoid biosynthetic proteins or the unique characteristics of carotenoid biosynthetic evolution in a specific phylogenetic lineage. Together, these analyses suggest a "bramble" model for microbial carotenoid biosynthesis whereby later biosynthetic steps exhibit greater evolutionary plasticity and reticulation compared to those closer to the biosynthetic "root". Structural diversification may be constrained ("trimmed") where selection is strong, but less so where selection is weaker. These analyses also highlight likely productive avenues for future research and bioprospecting by identifying both gaps in current knowledge and taxa which may particularly facilitate carotenoid diversification.
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Stepanenko I, Kompanetz V, Makhneva Z, Chekalin S, Moskalenko A, Razjivin A. Two-photon excitation spectroscopy of carotenoid-containing and carotenoid-depleted LH2 complexes from purple bacteria. J Phys Chem B 2010; 113:11720-3. [PMID: 19650635 DOI: 10.1021/jp906565m] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We applied two-photon fluorescence excitation spectroscopy to LH2 complex from purple bacteria Allochromatium minutissimum and Rhodobacter sphaeroides . Bacteriochlorophyll fluorescence was measured under two-photon excitation of the samples within the 1200-1500 nm region. Spectra were obtained for both carotenoid-containing and -depleted complexes of each bacterium to allow their direct comparison. The depletion of carotenoids did not alter the two-photon excitation spectra of either bacteria. The spectra featured a wide excitation band around 1350 nm (2x675 nm, 14,800 cm(-1)) which strongly resembled two-photon fluorescence excitation spectra of similar complexes published by other authors. We consider obtained experimental data to be evidence of direct two-photon excitation of bacteriochlorophyll excitonic states in this spectral region.
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Affiliation(s)
- Ilya Stepanenko
- A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, 119992 Leninskie Gory, MGU1S40, Moscow, Russia.
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Hyperspectral Reflectance and Fluorescence Imaging to Detect Scab Induced Stress in Apple Leaves. REMOTE SENSING 2009. [DOI: 10.3390/rs1040858] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Pathway evolution by horizontal transfer and positive selection is accommodated by relaxed negative selection upon upstream pathway genes in purple bacterial carotenoid biosynthesis. J Bacteriol 2009; 191:7500-8. [PMID: 19820094 DOI: 10.1128/jb.01060-09] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Horizontal gene transfer and selection are major forces driving microbial evolution. However, interactions between them are rarely studied. Phylogenetic analyses of purple bacterial carotenoid biosynthesis genes suggest two lineages: one producing spheroidenone and the other producing spirilloxanthin. Of the latter lineage, Rubrivivax gelatinosus S1 and Hoeflea phototrophica DFL-43 also or instead produce spheroidenone. Evolution of the spheroidenone pathway from that producing spirilloxanthin theoretically requires changes in the substrate specificity of upstream pathway enzymes and acquisition of a terminal ketolase (CrtA). In R. gelatinosus and likely also in H. phototrophica, CrtA was acquired from the Bacteroidetes, in which it functions as a hydroxylase. Estimation of nonsynonymous and synonymous mutations using several pairwise methods indicated positive selection upon both genes, consistent with their functional changes from hydroxylases to ketolases. Relaxed negative selection upon all other carotenoid biosynthetic genes in these organisms was also apparent, likely facilitating changes in their substrate specificities. Furthermore, all genes responsible for terminal carotenoid biosynthetic pathway steps were under reduced negative selection compared to those known to govern biosynthetic pathway specificity. Horizontal transfer of crtA into R. gelatinosus and H. phototrophica has therefore likely been promoted by (i) the apparent selective advantage of spheroidenone production relative to spirilloxanthin production, (ii) reduced negative selection upon other carotenoid biosynthetic genes, facilitating changes in their substrate specificities, and (iii) preexisting low enzyme substrate specificities due to relaxed negative selection. These results highlight the importance and complexity of selection acting upon both a horizontally transferred gene and the biochemical network into which it is integrating.
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Stepanenko IA, Kompanets VO, Chekalin SV, Makhneva ZK, Moskalenko AA, Pishchalnikov RY, Razjivin AP. Two-photon excitation spectrum of fluorescence of the light-harvesting complex B800–850 from Allochromatium minutissimum within 1200–1500 (600–750) nm spectral range is not carotenoid mediated. BIOCHEMISTRY MOSCOW SUPPLEMENT SERIES A-MEMBRANE AND CELL BIOLOGY 2009. [DOI: 10.1134/s1990747809020020] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Maresca JA, Graham JE, Bryant DA. The biochemical basis for structural diversity in the carotenoids of chlorophototrophic bacteria. PHOTOSYNTHESIS RESEARCH 2008; 97:121-40. [PMID: 18535920 DOI: 10.1007/s11120-008-9312-3] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2008] [Accepted: 05/14/2008] [Indexed: 05/15/2023]
Abstract
Ongoing work has led to the identification of most of the biochemical steps in carotenoid biosynthesis in chlorophototrophic bacteria. In carotenogenesis, a relatively small number of modifications leads to a great diversity of carotenoid structures. This review examines the individual steps in the pathway, discusses how each contributes to structural diversity among carotenoids, and summarizes recent progress in elucidating the biosynthetic pathways for carotenoids in chlorophototrophs.
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Affiliation(s)
- Julia A Maresca
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA
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Nakagawa K, Suzuki S, Fujii R, Gardiner AT, Cogdell RJ, Nango M, Hashimoto H. Probing the effect of the binding site on the electrostatic behavior of a series of carotenoids reconstituted into the light-harvesting 1 complex from purple photosynthetic bacterium Rhodospirillum rubrum detected by stark spectroscopy. J Phys Chem B 2008; 112:9467-75. [PMID: 18613723 DOI: 10.1021/jp801773j] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Reconstitutions of the LH1 complexes from the purple photosynthetic bacterium Rhodospirillum rubrum S1 were performed with a range of carotenoid molecules having different numbers of C=C conjugated double bonds. Since, as we showed previously, some of the added carotenoids tended to aggregate and then to remain with the reconstituted LH1 complexes (Nakagawa, K.; Suzuki, S.; Fujii, R.; Gardiner, A.T.; Cogdell, R.J.; Nango, M.; Hashimoto, H. Photosynth. Res. 2008, 95, 339-344), a further purification step using a sucrose density gradient centrifugation was introduced to improve purity of the final reconstituted sample. The measured absorption, fluorescence-excitation, and Stark spectra of the LH1 complex reconstituted with spirilloxanthin were identical with those obtained with the native, spirilloxanthin-containing, LH1 complex of Rs. rubrum S1. This shows that the electrostatic environments surrounding the carotenoid and bacteriochlorophyll a (BChl a) molecules in both of these LH1 complexes were essentially the same. In the LH1 complexes reconstituted with either rhodopin or spheroidene, however, the wavelength maximum at the BChl a Qy absorption band was slightly different to that of the native LH1 complexes. These differences in the transition energy of the BChl a Qy absorption band can be explained using the values of the nonlinear optical parameters of this absorption band, i.e., the polarizability change Tr(Deltaalpha) and the static dipole-moment change |Deltamu| upon photoexcitation, as determined using Stark spectroscopy. The local electric field around the BChl a in the native LH1 complex (ES) was determined to be approximately 3.0x10(6) V/cm. Furthermore, on the basis of the values of the nonlinear optical parameters of the carotenoids in the reconstituted LH1 complexes, it is possible to suggest that the conformations of carotenoids, anhydrorhodovibrin and spheroidene, in the LH1 complex were similar to that of rhodopin glucoside in crystal structure of the LH2 complex from Rhodopseudomonas acidophila 10050.
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Affiliation(s)
- Katsunori Nakagawa
- Department of Life and Materials Engineering, Graduate School of Engineering, Nagoya Institute of Technology, Nagoya, Japan
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Gu Z, Deming C, Yongbin H, Zhigang C, Feirong G. Optimization of carotenoids extraction from Rhodobacter sphaeroides. Lebensm Wiss Technol 2008. [DOI: 10.1016/j.lwt.2007.07.005] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Femtosecond spectroscopy of native and carotenoidless purple-bacterial LH2 clarifies functions of carotenoids. Biophys J 2008; 94:4808-11. [PMID: 18339744 DOI: 10.1529/biophysj.107.121681] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
EET between the two circular bacteriochlorophyll compartments B800 and B850 in native (containing the carotenoid rhodopin) and carotenoidless LH2 isolated from the photosynthetic purple sulfur bacterium Allochromatium minutissimum was investigated by femtosecond time-resolved transient absorption spectroscopy. Both samples were excited with 120-fs laser pulses at 800 nm, and spectral evolution was followed in the 720-955 nm range at different delay times. No dependence of transient absorption in the B800 band on the presence of the carotenoid rhodopin was found. Together with the likewise virtually unchanged absorption spectra in the bacteriochlorophyll Q(y) region, these observations suggest that absence of rhodopin does not significantly alter the structure of the pigment-protein complex including interactions between bacteriochlorophylls. Apparently, rhodopin does also not accelerate B800 to B850 EET in LH2, contrary to what has been suggested previously. Moreover, "carotenoid-catalyzed internal conversion" can also be excluded for the bacteriochlorophylls in LH2 of A. minutissimum. Together with previous results obtained with two-photon fluorescence excitation spectroscopy, it can also be concluded that there is neither EET from rhodopin to B800 nor (back-)EET from B800 to rhodopin.
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Hirabayashi H, Ishii T, Takaichi S, Inoue K, Uehara K. The role of the carotenoids in the photoadaptation of the brown-colored sulfur bacterium Chlorobium phaerobacteroides. Photochem Photobiol 2007. [DOI: 10.1111/j.1751-1097.2004.tb00396.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Electrochemical and EQCM investigation of a selenium derivatized carotenoid in the self-assembled state at a gold electrode. J Electroanal Chem (Lausanne) 2006. [DOI: 10.1016/j.jelechem.2006.01.026] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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