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Dürig T, Schmidt LS, White JDL, Bowman MH. DendroScan: an open source tool to conduct comparative statistical tests and dendrogrammatic analyses on particle morphometry. Sci Rep 2020; 10:21682. [PMID: 33303855 PMCID: PMC7730387 DOI: 10.1038/s41598-020-78698-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Accepted: 11/24/2020] [Indexed: 11/16/2022] Open
Abstract
Quantitative shape analysis of juvenile pyroclasts is applied in volcanology to reconstruct the dynamics and styles of eruptions, and to explore the details of tephra transport, dispersal, and emplacement. Morphometric analyses often include comparison of multiple data sets with a set of dimensionless shape parameters. Here we present “DendroScan”, an open source Matlab program that provides the user with all the multivariate statistical methods needed to produce such morphometric comparisons. Serving as a statistical “toolbox”, DendroScan conducts Levene-, t-, and equivalence tests, presenting the results in ad hoc interpretable graphs. Furthermore, it is designed to conduct dendrogrammatic analyses of particle morphometry, a recently developed approach for the inter-comparison of multiple morphometric data sets. DendroScan produces tree diagrams, in which the analysed samples are sorted according to their morphometric dissimilarity, allowing the user to identify, e.g., samples that are statistically equivalent. To demonstrate DendroScan’s potential, ten experimental samples are compared with volcanic ash samples generated by the Havre 2012 deep-sea eruption in the Kermadec arc (New Zealand). We show how, using DendroScan-based results, information on the eruptive mechanism can be inferred, and how the cooling history of the experimental melt is reflected in the dissimilarity of thermally granulated fragments.
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Affiliation(s)
- T Dürig
- Geology Department, University of Otago, Dunedin, New Zealand. .,Institute of Earth Sciences, University of Iceland, Reykjavík, Iceland.
| | - L S Schmidt
- Department of Geosciences, University of Oslo, Oslo, Norway
| | - J D L White
- Geology Department, University of Otago, Dunedin, New Zealand
| | - M H Bowman
- Geology Department, University of Otago, Dunedin, New Zealand
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Rizzi M, Rodrigues FL, Medeiros L, Ortega I, Rodrigues L, Monteiro DS, Kessler F, Proietti MC. Ingestion of plastic marine litter by sea turtles in southern Brazil: abundance, characteristics and potential selectivity. MARINE POLLUTION BULLETIN 2019; 140:536-548. [PMID: 30803675 DOI: 10.1016/j.marpolbul.2019.01.054] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2018] [Revised: 01/24/2019] [Accepted: 01/24/2019] [Indexed: 05/25/2023]
Abstract
The ingestion of plastic marine litter (PML) by sea turtles is widespread and concerning, and the five species that occur in the southwestern Atlantic - green, loggerhead, olive ridley, leatherback and hawksbill - are vulnerable to this pollution. Here, we quantified and characterized PML ingested by these species in southern Brazil, and observed PML ingestion in 49 of 86 sampled individuals (~57.0%). Green turtles presented the highest rates and variety of ingested plastics, and such ingestion has been high at least since 1997. Omnivorous turtles presented higher PML ingestion than carnivorous ones. Loggerheads displayed a negative correlation between body size and number of ingested items. Green turtles ingested mostly flexible transparent and flexible/hard white plastics; loggerheads ate mainly flexible, hard and foam fragments, in white and black/brown colors. These results help us better understand PML ingestion by sea turtles, highlighting the seriousness of this threat and providing information for prevention and mitigation strategies.
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Affiliation(s)
- Milena Rizzi
- Programa de Pós-Graduação em Oceanografia Biológica - PPGOB, Instituto de Oceanografia, Universidade Federal do Rio Grande - FURG, Av. Itália, km 8, CEP 96201-900 Rio Grande, RS, Brazil.
| | - Fábio L Rodrigues
- Centro de Estudos Costeiros, Limnológicos e Marinhos (CECLIMAR), Universidade Federal do Rio Grande do Sul, Campus Litoral Norte, 95625-000 Imbé, RS, Brazil
| | - Luciana Medeiros
- Programa de Pós-Graduação em Oceanografia Biológica - PPGOB, Instituto de Oceanografia, Universidade Federal do Rio Grande - FURG, Av. Itália, km 8, CEP 96201-900 Rio Grande, RS, Brazil
| | - Ileana Ortega
- Programa de Pós-Graduação em Oceanografia Biológica - PPGOB, Instituto de Oceanografia, Universidade Federal do Rio Grande - FURG, Av. Itália, km 8, CEP 96201-900 Rio Grande, RS, Brazil
| | - Lucas Rodrigues
- Programa de Pós-Graduação em Oceanografia Biológica - PPGOB, Instituto de Oceanografia, Universidade Federal do Rio Grande - FURG, Av. Itália, km 8, CEP 96201-900 Rio Grande, RS, Brazil
| | - Danielle S Monteiro
- Núcleo de Educação e Monitoramento Ambiental - NEMA, Rua Maria Araújo, 450 - Cassino, CEP 96207-480 Rio Grande, RS, Brazil
| | - Felipe Kessler
- Escola de Química e Alimentos, Universidade Federal do Rio Grande - FURG, Av. Itália, km 8, CEP 96201-900 Rio Grande, RS, Brazil
| | - Maíra C Proietti
- Programa de Pós-Graduação em Oceanografia Biológica - PPGOB, Instituto de Oceanografia, Universidade Federal do Rio Grande - FURG, Av. Itália, km 8, CEP 96201-900 Rio Grande, RS, Brazil
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Is Marine Dispersion of the Lethargic Crab Disease Possible? Assessing the Tolerance of Exophiala cancerae to a Broad Combination of Salinities, Temperatures, and Exposure Times. Mycopathologia 2017; 182:997-1004. [DOI: 10.1007/s11046-017-0169-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2017] [Accepted: 06/17/2017] [Indexed: 12/01/2022]
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Gaube P, Barceló C, McGillicuddy DJ, Domingo A, Miller P, Giffoni B, Marcovaldi N, Swimmer Y. The use of mesoscale eddies by juvenile loggerhead sea turtles (Caretta caretta) in the southwestern Atlantic. PLoS One 2017; 12:e0172839. [PMID: 28249020 PMCID: PMC5383008 DOI: 10.1371/journal.pone.0172839] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2016] [Accepted: 02/10/2017] [Indexed: 11/18/2022] Open
Abstract
Marine animals, such as turtles, seabirds and pelagic fishes, are observed to travel and congregate around eddies in the open ocean. Mesoscale eddies, large swirling ocean vortices with radius scales of approximately 50–100 km, provide environmental variability that can structure these populations. In this study, we investigate the use of mesoscale eddies by 24 individual juvenile loggerhead sea turtles (Caretta caretta) in the Brazil-Malvinas Confluence region. The influence of eddies on turtles is assessed by collocating the turtle trajectories to the tracks of mesoscale eddies identified in maps of sea level anomaly. Juvenile loggerhead sea turtles are significantly more likely to be located in the interiors of anticyclones in this region. The distribution of surface drifters in eddy interiors reveals no significant association with the interiors of cyclones or anticyclones, suggesting higher prevalence of turtles in anticyclones is a result of their behavior. In the southern portion of the Brazil-Malvinas Confluence region, turtle swimming speed is significantly slower in the interiors of anticyclones, when compared to the periphery, suggesting that these turtles are possibly feeding on prey items associated with anomalously low near-surface chlorophyll concentrations observed in those features.
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Affiliation(s)
- Peter Gaube
- Department of Applied Ocean Physics and Engineering, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, United States of America
- * E-mail:
| | - Caren Barceló
- College of Earth, Ocean and Atmospheric Sciences, Oregon State University, Corvallis, Oregon, United States of America
| | - Dennis J. McGillicuddy
- Department of Applied Ocean Physics and Engineering, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, United States of America
| | - Andrés Domingo
- Dirección Nacional de Recursos Acuáticos, Montevideo, Uruguay
| | - Philip Miller
- Centro de Investigación y Conservación Marina (CICMAR), El Pinar, Canelones, Uruguay
| | - Bruno Giffoni
- Projecto TAMAR, Fundação Pró Tamar / ICMBio, Salvador, Bahia, Brazil
| | - Neca Marcovaldi
- Projecto TAMAR, Fundação Pró Tamar / ICMBio, Salvador, Bahia, Brazil
| | - Yonat Swimmer
- NOAA Fisheries, Long Beach, California, United States of America
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