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Flynn RF, Haraguchi L, McQuaid J, Burger JM, Mutseka Lunga P, Stirnimann L, Samanta S, Roychoudhury AN, Fawcett SE. Nanoplankton: The dominant vector for carbon export across the Atlantic Southern Ocean in spring. SCIENCE ADVANCES 2023; 9:eadi3059. [PMID: 38039363 PMCID: PMC10691778 DOI: 10.1126/sciadv.adi3059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Accepted: 11/02/2023] [Indexed: 12/03/2023]
Abstract
Across the Southern Ocean, large (≥20 μm) diatoms are generally assumed to be the primary vector for carbon export, although this assumption derives mainly from summertime observations. Here, we investigated carbon production and export potential during the Atlantic Southern Ocean's spring bloom from size-fractionated measurements of net primary production (NPP), nitrogen (nitrate, ammonium, urea) and iron (labile inorganic iron, organically complexed iron) uptake, and a high-resolution characterization of phytoplankton community composition. The nanoplankton-sized (2.7 to 20 μm) diatom, Chaetoceros spp., dominated the biomass, NPP, and nitrate uptake across the basin (40°S to 56°S), which we attribute to their low iron requirement, rapid response to increased light, and ability to escape grazing when aggregated into chains. We estimate that the spring Chaetoceros bloom accounted for >25% of annual export production across the Atlantic Southern Ocean, a finding consistent with recent observations from other regions highlighting the central role of the phytoplankton "middle class" in carbon export.
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Affiliation(s)
- Raquel F. Flynn
- Department of Oceanography, University of Cape Town, Cape Town, South Africa
| | | | - Jeff McQuaid
- Integrative Oceanography Division, Scripps Institution of Oceanography, La Jolla, CA, USA
| | - Jessica M. Burger
- Department of Oceanography, University of Cape Town, Cape Town, South Africa
| | | | - Luca Stirnimann
- Department of Oceanography, University of Cape Town, Cape Town, South Africa
| | - Saumik Samanta
- Department of Earth Sciences, Stellenbosch University, Stellenbosch, South Africa
| | | | - Sarah E. Fawcett
- Department of Oceanography, University of Cape Town, Cape Town, South Africa
- Marine and Antarctic Research Centre for Innovation and Sustainability (MARIS), University of Cape Town, Cape Town, South Africa
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Han M, Luo G, He J, Liang Y, Chen X, Liu G, Su Y, Ge F, Yu H, Zhao J, Hao Q, Shao H, Sung YY, Mok WJ, Wong LL, McMinn A, Wang M. Distributions and relationships of virio- and picoplankton in the epi-, meso- and bathypelagic zones of the Amundsen Sea, West Antarctica during the austral summer. Front Microbiol 2022; 13:941323. [PMID: 35966700 PMCID: PMC9363919 DOI: 10.3389/fmicb.2022.941323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Accepted: 07/08/2022] [Indexed: 11/13/2022] Open
Abstract
Virioplankton and picoplankton are the most abundant marine biological entities on earth and mediate biogeochemical cycles in the Southern Ocean. However, understanding of their distribution and relationships with environmental factors is lacking. Here, we report on their distribution and relationships with environmental factors at 48 stations from 112.5° to 150°W and 67° to 75.5°S in the Amundsen Sea of West Antarctica. The epipelagic stations were grouped into four clusters based on the virio- and picoplankton composition and abundance. Clusters three and four, which were associated with the ice-edge blooms in the coastal and Amundsen Sea Polynya (ASP) areas, had high abundances of autotrophic picoeukaryotes; this resulted in subsequent high abundances of heterotrophic prokaryotes and viruses. Cluster two stations were in open oceanic areas, where the abundances of autotrophic and heterotrophic picoplankton were low. Cluster one stations were located between the areas of blooms and the oceanic areas, which had a low abundance of heterotrophic prokaryotes and picoeukaryotes and a high abundance of virioplankton. The abundance of viruses was significantly correlated with the abundances of autotrophic picoeukaryotes and Chl-a concentration in oceanic areas, although this reflected a time-lag with autotrophic picoeukaryote and heterotrophic prokaryotes abundances in ice-edge bloom areas. The upwelling of Circumpolar Deep Water (CDW) might have induced the high abundance of autotrophic picoeukaryotes in the epipelagic zone, and the sinking particulate organic carbon (POC) might have induced the high abundance of heterotrophic prokaryotes and virioplankton in the meso- and bathypelagic zones. This study shows that the summer distribution of virio- and picoplankton in the Amundsen Sea of West Antarctica was mainly controlled by upwelling of the CDW and the timing of ice-edge blooms.
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Affiliation(s)
- Meiaoxue Han
- College of Marine Life Sciences, Key Lab of Polar Oceanography and Global Ocean Change, Institute of Evolution and Marine Biodiversity, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China
| | - Guangfu Luo
- Antarctic Great Wall Ecology National Observation and Research Station, Polar Research Institute of China, Shanghai, China
- MNR Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, China
- College of Environmental Science and Engineering, Tongji University, Shanghai, China
| | - Jianfeng He
- Antarctic Great Wall Ecology National Observation and Research Station, Polar Research Institute of China, Shanghai, China
- MNR Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, China
- College of Environmental Science and Engineering, Tongji University, Shanghai, China
- *Correspondence: Jianfeng He,
| | - Yantao Liang
- College of Marine Life Sciences, Key Lab of Polar Oceanography and Global Ocean Change, Institute of Evolution and Marine Biodiversity, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China
- UMT-OUC Joint Centre for Marine Studies, Qingdao, China
- Yantao Liang,
| | - Xuechao Chen
- College of Marine Life Sciences, Key Lab of Polar Oceanography and Global Ocean Change, Institute of Evolution and Marine Biodiversity, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China
| | - Gang Liu
- College of Marine Life Sciences, Key Lab of Polar Oceanography and Global Ocean Change, Institute of Evolution and Marine Biodiversity, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China
| | - Yue Su
- College of Marine Life Sciences, Key Lab of Polar Oceanography and Global Ocean Change, Institute of Evolution and Marine Biodiversity, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China
| | - Fuyue Ge
- College of Marine Life Sciences, Key Lab of Polar Oceanography and Global Ocean Change, Institute of Evolution and Marine Biodiversity, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China
| | - Hao Yu
- College of Marine Life Sciences, Key Lab of Polar Oceanography and Global Ocean Change, Institute of Evolution and Marine Biodiversity, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China
| | - Jun Zhao
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
| | - Qiang Hao
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
| | - Hongbing Shao
- College of Marine Life Sciences, Key Lab of Polar Oceanography and Global Ocean Change, Institute of Evolution and Marine Biodiversity, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China
- UMT-OUC Joint Centre for Marine Studies, Qingdao, China
| | - Yeong Yik Sung
- UMT-OUC Joint Centre for Marine Studies, Qingdao, China
- Institute of Marine Biotechnology, University of Malaysia Terengganu (UMT), Kuala Terengganu, Malaysia
| | - Wen Jye Mok
- UMT-OUC Joint Centre for Marine Studies, Qingdao, China
- Institute of Marine Biotechnology, University of Malaysia Terengganu (UMT), Kuala Terengganu, Malaysia
| | - Li Lian Wong
- UMT-OUC Joint Centre for Marine Studies, Qingdao, China
- Institute of Marine Biotechnology, University of Malaysia Terengganu (UMT), Kuala Terengganu, Malaysia
| | - Andrew McMinn
- College of Marine Life Sciences, Key Lab of Polar Oceanography and Global Ocean Change, Institute of Evolution and Marine Biodiversity, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS, Australia
| | - Min Wang
- College of Marine Life Sciences, Key Lab of Polar Oceanography and Global Ocean Change, Institute of Evolution and Marine Biodiversity, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China
- UMT-OUC Joint Centre for Marine Studies, Qingdao, China
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, China
- Min Wang,
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Affiliation(s)
- Aditya R. Nayak
- Department of Ocean and Mechanical Engineering, Florida Atlantic University, Boca Raton, FL, USA
- Harbor Branch Oceanographic Institute, Florida Atlantic University, Fort Pierce, FL, USA
| | - Michael S. Twardowski
- Department of Ocean and Mechanical Engineering, Florida Atlantic University, Boca Raton, FL, USA
- Harbor Branch Oceanographic Institute, Florida Atlantic University, Fort Pierce, FL, USA
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Zill JC, Kansy M, Goss R, Alia A, Wilhelm C, Matysik J. 15N photo-CIDNP MAS NMR on both photosystems and magnetic field-dependent 13C photo-CIDNP MAS NMR in photosystem II of the diatom Phaeodactylum tricornutum. PHOTOSYNTHESIS RESEARCH 2019; 140:151-171. [PMID: 30194671 DOI: 10.1007/s11120-018-0578-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2018] [Accepted: 08/24/2018] [Indexed: 05/14/2023]
Abstract
Diatoms contribute about 20-25% to the global marine productivity and are successful autotrophic players in all aquatic ecosystems, which raises the question whether this performance is caused by differences in their photosynthetic apparatus. Photo-CIDNP MAS NMR presents a unique tool to obtain insights into the reaction centres of photosystems (PS), by selective enhancement of NMR signals from both, the electron donor and the primary electron acceptor molecules. Here, we present the first observation of the solid-state photo-CIDNP effect in the pennate diatoms. In comparison to plant PSs, similar spectral patterns have been observed for PS I at 9.4 T and PS II at 4.7 T in the PSs of Phaeodactylum tricornutum. Studies at different magnetic fields reveal a surprising sign change of the 13C photo-CIDNP MAS NMR signals indicating an alternative arrangement of cofactors which allows to quench the Chl a donor triplet state in contrast to the situation in plant PS II. This unusual quenching mechanism is related to a carotenoid molecule in close vicinity to the Chl a donor. In addition to the photo-CIDNP MAS NMR signals arising from the donor and the primary electron acceptor cofactors, a complete set of signals of the imidazole ring ligating to the magnesium of Chl a can be observed.
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Affiliation(s)
- Jeremias C Zill
- Institute of Analytical Chemistry, University of Leipzig, Johannisallee 29, 04103, Leipzig, Germany
| | - Marcel Kansy
- Institute of Biology, University of Leipzig, Johannisallee 21-23, 04103, Leipzig, Germany
| | - Reimund Goss
- Institute of Biology, University of Leipzig, Johannisallee 21-23, 04103, Leipzig, Germany
| | - A Alia
- Leiden Institute of Chemistry, University of Leiden, Einsteinweg 55, P.O. Box 9502, 2300 RA, Leiden, The Netherlands
- Institute of Medical Physics and Biophysics, University of Leipzig, Härtelstr. 16-18, 04107, Leipzig, Germany
| | - Christian Wilhelm
- Institute of Biology, University of Leipzig, Johannisallee 21-23, 04103, Leipzig, Germany
| | - Jörg Matysik
- Institute of Analytical Chemistry, University of Leipzig, Johannisallee 29, 04103, Leipzig, Germany.
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Gallo C, Nuzzo G, d'Ippolito G, Manzo E, Sardo A, Fontana A. Sterol Sulfates and Sulfotransferases in Marine Diatoms. Methods Enzymol 2018; 605:101-138. [PMID: 29909823 DOI: 10.1016/bs.mie.2018.03.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Sterol sulfates are widely occurring molecules in marine organisms. Their importance has been so far underestimated although many of these compounds are crucial mediators of physiological and ecological functions in other organisms. Biosynthesis of sterol sulfates is controlled by cytosolic sulfotransferases (SULTs), a varied family of enzymes that catalyze the transfer of a sulfo residue (-SO3H) from the universal donor 3'-phosphoadenosine-5'-phosphosulfate to the hydroxyl function at C-3 of the steroid skeleton. The absence of molecular tools has been the main impediment to the development of a biosynthetic study of this class of compounds in marine organisms. In fact, there is very limited information about these enzymes in marine environments. SULT activity has, however, been reported in several marine species, and, recently, the production of sterol sulfates has been linked to the control of growth in marine diatoms. In this chapter, we describe methods for the study of sterol sulfates in this lineage of marine microalgae. The main aim is to provide the tools useful to deal with the biosynthesis and regulation of these compounds and to circumvent the bottleneck of the lack of molecular information. The protocols have been designed for marine diatoms, but most of the procedures can be used for other marine organisms.
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Affiliation(s)
- Carmela Gallo
- National Research Council of Italy, Institute of Biomolecular Chemistry, Pozzuoli, Naples, Italy
| | - Genoveffa Nuzzo
- National Research Council of Italy, Institute of Biomolecular Chemistry, Pozzuoli, Naples, Italy
| | - Giuliana d'Ippolito
- National Research Council of Italy, Institute of Biomolecular Chemistry, Pozzuoli, Naples, Italy.
| | - Emiliano Manzo
- National Research Council of Italy, Institute of Biomolecular Chemistry, Pozzuoli, Naples, Italy
| | - Angela Sardo
- National Research Council of Italy, Institute of Biomolecular Chemistry, Pozzuoli, Naples, Italy
| | - Angelo Fontana
- National Research Council of Italy, Institute of Biomolecular Chemistry, Pozzuoli, Naples, Italy.
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Zhang X, Huot Y, Bricaud A, Sosik HM. Inversion of spectral absorption coefficients to infer phytoplankton size classes, chlorophyll concentration, and detrital matter. APPLIED OPTICS 2015; 54:5805-5816. [PMID: 26193033 DOI: 10.1364/ao.54.005805] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Measured spectral absorption coefficients were inverted to infer phytoplankton concentration in three size classes (picoplankton, nanoplankton, and microplankton), chlorophyll concentration [Chl], and both magnitude and spectral shape of absorption by colored detrital matter (CDM). Our algorithm allowed us to solve for the nonlinear factor of CDM absorption slope separately from the other linear factors, thus fully utilizing the additive characteristic inherent in absorption coefficients. We validated the inversion with three datasets: two spatially distributed global datasets, the Laboratoire d'Océanographie de Villefranche dataset and the NASA bio-Optical Marine Algorithm Dataset, and a time series coastal dataset, the Martha's Vineyard Coastal Observatory dataset. Comparison with high performance liquid chromatography analyses showed that the phytoplankton size classes can be retrieved with correlation coefficients (r)>0.7, root mean square errors of 0.2, and median relative errors of 20% in oceanic waters and with similar performance in coastal waters. Much improved agreement was found for the entire phytoplankton population, with r>0.90 for [Chl] and absorption coefficients (aph) for all three datasets. The inferred aCDM(400) and CDM spectral slope agree within ±4% of measurements in both oceanic and coastal waters. The results indicate that the chlorophyll-a specific absorption spectra used as an inversion kernel represent well the global mean states for each of the three phytoplankton size classes. The method can be applied to either bulk or particulate absorption data and is spectrally flexible.
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Herndl GJ, Reinthaler T. Microbial control of the dark end of the biological pump. NATURE GEOSCIENCE 2013; 6:718-724. [PMID: 24707320 PMCID: PMC3972885 DOI: 10.1038/ngeo1921] [Citation(s) in RCA: 124] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
A fraction of the carbon captured by phytoplankton in the sunlit surface ocean sinks to depth as dead organic matter and faecal material. The microbial breakdown of this material in the subsurface ocean generates carbon dioxide. Collectively, this microbially mediated flux of carbon from the atmosphere to the ocean interior is termed the biological pump. In recent decades it has become clear that the composition of the phytoplankton community in the surface ocean largely determines the quantity and quality of organic matter that sinks to depth. This settling organic matter, however, is not sufficient to meet the energy demands of microbes in the dark ocean. Two additional sources of organic matter have been identified: non-sinking organic particles of debated origin that escape capture by sediment traps and exhibit stable concentrations throughout the dark ocean, and microbes that convert inorganic carbon into organic matter. Whether these two sources can together account for the significant mismatch between organic matter consumption and supply in the dark ocean remains to be seen. It is clear, however, that the microbial community of the deep ocean works in a fundamentally different way from surface water communities.
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Affiliation(s)
- Gerhard J. Herndl
- Department of Limnology and Oceanography, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria
- Department of Biological Oceanography, Royal Netherlands Institute for Sea Research, 1790 AB Den Burg, Texel, The Netherlands
- Correspondence and requests for materials should be addressed to G.J.H.
| | - Thomas Reinthaler
- Department of Limnology and Oceanography, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria
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10
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Butterfield NJ. Macroevolutionary turnover through the Ediacaran transition: ecological and biogeochemical implications. ACTA ACUST UNITED AC 2009. [DOI: 10.1144/sp326.3] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
AbstractEcological and evolutionary principles are often context-dependent, particularly where the context is biologically defined. Organ-grade animals (eumetazoans) are particularly powerful contextual agents, with a unique capacity to drive escalatory co-evolution and build multi-tiered food-webs. The evolution of eumetazoans through the Ediacaran and early Cambrian fundamentally altered macroecological and macroevolutionary dynamics, including the structure and function of the marine carbon cycle. Pelagic eumetazoans can be held responsible for driving the evolution of relatively large eukaryotic phytoplankton, thereby shifting the system from a turbid, stratified, cyanobacteria-dominated stable state to the clear-water, well-oxygenated, algae-dominated condition typical of the Phanerozoic. Intermittent return to the pre-Ediacaran state during Phanerozoic extinctions and oceanic anoxic events suggests that the widespread anoxia detected in pre-Ediacaran deep-marine sequences may be a consequence of this alternate biological pump rather than a reflection of fundamentally lower levels of atmospheric oxygen. The transition between the pre- and post-Ediacaran states is also associated with the oldest commercially exploitable hydrocarbons, a possible by-product of invading animals and their top-down impact on the biological pump.
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Affiliation(s)
- Nicholas J. Butterfield
- Department of Earth Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EQ, UK (e-mail: )
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