1
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Yoder L. Neural flip-flops I: Short-term memory. PLoS One 2024; 19:e0300534. [PMID: 38489250 PMCID: PMC10942071 DOI: 10.1371/journal.pone.0300534] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2022] [Accepted: 02/27/2024] [Indexed: 03/17/2024] Open
Abstract
The networks proposed here show how neurons can be connected to form flip-flops, the basic building blocks in sequential logic systems. The novel neural flip-flops (NFFs) are explicit, dynamic, and can generate known phenomena of short-term memory. For each network design, all neurons, connections, and types of synapses are shown explicitly. The neurons' operation depends only on explicitly stated, minimal properties of excitement and inhibition. This operation is dynamic in the sense that the level of neuron activity is the only cellular change, making the NFFs' operation consistent with the speed of most brain functions. Memory tests have shown that certain neurons fire continuously at a high frequency while information is held in short-term memory. These neurons exhibit seven characteristics associated with memory formation, retention, retrieval, termination, and errors. One of the neurons in each of the NFFs produces all of the characteristics. This neuron and a second neighboring neuron together predict eight unknown phenomena. These predictions can be tested by the same methods that led to the discovery of the first seven phenomena. NFFs, together with a decoder from a previous paper, suggest a resolution to the longstanding controversy of whether short-term memory depends on neurons firing persistently or in brief, coordinated bursts. Two novel NFFs are composed of two and four neurons. Their designs follow directly from a standard electronic flip-flop design by moving each negation symbol from one end of the connection to the other. This does not affect the logic of the network, but it changes the logic of each component to a logic function that can be implemented by a single neuron. This transformation is reversible and is apparently new to engineering as well as neuroscience.
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Affiliation(s)
- Lane Yoder
- Department of Science and Mathematics, University of Hawaii, Honolulu, Hawaii, United States of America
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2
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Payne HL, Raymond JL, Goldman MS. Interactions between circuit architecture and plasticity in a closed-loop cerebellar system. eLife 2024; 13:e84770. [PMID: 38451856 PMCID: PMC10919899 DOI: 10.7554/elife.84770] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Accepted: 02/13/2024] [Indexed: 03/09/2024] Open
Abstract
Determining the sites and directions of plasticity underlying changes in neural activity and behavior is critical for understanding mechanisms of learning. Identifying such plasticity from neural recording data can be challenging due to feedback pathways that impede reasoning about cause and effect. We studied interactions between feedback, neural activity, and plasticity in the context of a closed-loop motor learning task for which there is disagreement about the loci and directions of plasticity: vestibulo-ocular reflex learning. We constructed a set of circuit models that differed in the strength of their recurrent feedback, from no feedback to very strong feedback. Despite these differences, each model successfully fit a large set of neural and behavioral data. However, the patterns of plasticity predicted by the models fundamentally differed, with the direction of plasticity at a key site changing from depression to potentiation as feedback strength increased. Guided by our analysis, we suggest how such models can be experimentally disambiguated. Our results address a long-standing debate regarding cerebellum-dependent motor learning, suggesting a reconciliation in which learning-related changes in the strength of synaptic inputs to Purkinje cells are compatible with seemingly oppositely directed changes in Purkinje cell spiking activity. More broadly, these results demonstrate how changes in neural activity over learning can appear to contradict the sign of the underlying plasticity when either internal feedback or feedback through the environment is present.
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Affiliation(s)
- Hannah L Payne
- Zuckerman Mind Brain Behavior Institute, Columbia UniversityNew YorkUnited States
| | | | - Mark S Goldman
- Center for Neuroscience, Department of Neurobiology, Physiology and Behavior, University of California, DavisDavisUnited States
- Department of Ophthalmology and Vision Science, University of California, DavisDavisUnited States
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3
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Brown LS, Cho JR, Bolkan SS, Nieh EH, Schottdorf M, Tank DW, Brody CD, Witten IB, Goldman MS. Neural circuit models for evidence accumulation through choice-selective sequences. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.01.555612. [PMID: 38234715 PMCID: PMC10793437 DOI: 10.1101/2023.09.01.555612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2024]
Abstract
Decision making is traditionally thought to be mediated by populations of neurons whose firing rates persistently accumulate evidence across time. However, recent decision-making experiments in rodents have observed neurons across the brain that fire sequentially as a function of spatial position or time, rather than persistently, with the subset of neurons in the sequence depending on the animal's choice. We develop two new candidate circuit models, in which evidence is encoded either in the relative firing rates of two competing chains of neurons or in the network location of a stereotyped pattern ("bump") of neural activity. Encoded evidence is then faithfully transferred between neuronal populations representing different positions or times. Neural recordings from four different brain regions during a decision-making task showed that, during the evidence accumulation period, different brain regions displayed tuning curves consistent with different candidate models for evidence accumulation. This work provides mechanistic models and potential neural substrates for how graded-value information may be precisely accumulated within and transferred between neural populations, a set of computations fundamental to many cognitive operations.
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4
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Tibi M, Biton Hayun S, Hochgerner H, Lin Z, Givon S, Ophir O, Shay T, Mueller T, Segev R, Zeisel A. A telencephalon cell type atlas for goldfish reveals diversity in the evolution of spatial structure and cell types. SCIENCE ADVANCES 2023; 9:eadh7693. [PMID: 37910612 PMCID: PMC10619943 DOI: 10.1126/sciadv.adh7693] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Accepted: 09/29/2023] [Indexed: 11/03/2023]
Abstract
Teleost fish form the largest group of vertebrates and show a tremendous variety of adaptive behaviors, making them critically important for the study of brain evolution and cognition. The neural basis mediating these behaviors remains elusive. We performed a systematic comparative survey of the goldfish telencephalon. We mapped cell types using single-cell RNA sequencing and spatial transcriptomics, resulting in de novo molecular neuroanatomy parcellation. Glial cells were highly conserved across 450 million years of evolution separating mouse and goldfish, while neurons showed diversity and modularity in gene expression. Specifically, somatostatin interneurons, famously interspersed in the mammalian isocortex for local inhibitory input, were curiously aggregated in a single goldfish telencephalon nucleus but molecularly conserved. Cerebral nuclei including the striatum, a hub for motivated behavior in amniotes, had molecularly conserved goldfish homologs. We suggest elements of a hippocampal formation across the goldfish pallium. Last, aiding study of the teleostan everted telencephalon, we describe substantial molecular similarities between goldfish and zebrafish neuronal taxonomies.
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Affiliation(s)
- Muhammad Tibi
- Faculty of Biotechnology and Food Engineering, Technion–Israel Institute of Technology, 3200003 Haifa, Israel
| | - Stav Biton Hayun
- Department of Biomedical Engineering, Ben-Gurion University of the Negev, 8410501 Beer Sheva, Israel
| | - Hannah Hochgerner
- Faculty of Biotechnology and Food Engineering, Technion–Israel Institute of Technology, 3200003 Haifa, Israel
| | - Zhige Lin
- Faculty of Biotechnology and Food Engineering, Technion–Israel Institute of Technology, 3200003 Haifa, Israel
| | - Shachar Givon
- Department of Life Sciences, Ben-Gurion University of the Negev, 8410501 Beer Sheva, Israel
| | - Osnat Ophir
- Faculty of Biotechnology and Food Engineering, Technion–Israel Institute of Technology, 3200003 Haifa, Israel
| | - Tal Shay
- Department of Life Sciences, Ben-Gurion University of the Negev, 8410501 Beer Sheva, Israel
| | - Thomas Mueller
- Department of Biology, Montclair State University, 1 Normal Avenue, Montclair, NJ 07043, USA
| | - Ronen Segev
- Department of Biomedical Engineering, Ben-Gurion University of the Negev, 8410501 Beer Sheva, Israel
- Department of Life Sciences, Ben-Gurion University of the Negev, 8410501 Beer Sheva, Israel
- The School of Brain Sciences and Cognition, Ben-Gurion University of the Negev, 8410501 Beer Sheva, Israel
| | - Amit Zeisel
- Faculty of Biotechnology and Food Engineering, Technion–Israel Institute of Technology, 3200003 Haifa, Israel
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5
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Yang E, Zwart MF, James B, Rubinov M, Wei Z, Narayan S, Vladimirov N, Mensh BD, Fitzgerald JE, Ahrens MB. A brainstem integrator for self-location memory and positional homeostasis in zebrafish. Cell 2022; 185:5011-5027.e20. [PMID: 36563666 DOI: 10.1016/j.cell.2022.11.022] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 06/28/2022] [Accepted: 11/21/2022] [Indexed: 12/24/2022]
Abstract
To track and control self-location, animals integrate their movements through space. Representations of self-location are observed in the mammalian hippocampal formation, but it is unknown if positional representations exist in more ancient brain regions, how they arise from integrated self-motion, and by what pathways they control locomotion. Here, in a head-fixed, fictive-swimming, virtual-reality preparation, we exposed larval zebrafish to a variety of involuntary displacements. They tracked these displacements and, many seconds later, moved toward their earlier location through corrective swimming ("positional homeostasis"). Whole-brain functional imaging revealed a network in the medulla that stores a memory of location and induces an error signal in the inferior olive to drive future corrective swimming. Optogenetically manipulating medullary integrator cells evoked displacement-memory behavior. Ablating them, or downstream olivary neurons, abolished displacement corrections. These results reveal a multiregional hindbrain circuit in vertebrates that integrates self-motion and stores self-location to control locomotor behavior.
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Affiliation(s)
- En Yang
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
| | - Maarten F Zwart
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA; School of Psychology and Neuroscience, Centre for Biophotonics, University of St Andrews, St. Andrews, UK
| | - Ben James
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Mikail Rubinov
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA; Department of Biomedical Engineering, Vanderbilt University, Nashville, TN 37235, USA
| | - Ziqiang Wei
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Sujatha Narayan
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Nikita Vladimirov
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA; URPP Adaptive Brain Circuits in Development and Learning (AdaBD), University of Zurich, Zurich, Switzerland
| | - Brett D Mensh
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - James E Fitzgerald
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
| | - Misha B Ahrens
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
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6
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Karigo T, Deutsch D. Flexibility of neural circuits regulating mating behaviors in mice and flies. Front Neural Circuits 2022; 16:949781. [PMID: 36426135 PMCID: PMC9679785 DOI: 10.3389/fncir.2022.949781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2022] [Accepted: 07/28/2022] [Indexed: 11/11/2022] Open
Abstract
Mating is essential for the reproduction of animal species. As mating behaviors are high-risk and energy-consuming processes, it is critical for animals to make adaptive mating decisions. This includes not only finding a suitable mate, but also adapting mating behaviors to the animal's needs and environmental conditions. Internal needs include physical states (e.g., hunger) and emotional states (e.g., fear), while external conditions include both social cues (e.g., the existence of predators or rivals) and non-social factors (e.g., food availability). With recent advances in behavioral neuroscience, we are now beginning to understand the neural basis of mating behaviors, particularly in genetic model organisms such as mice and flies. However, how internal and external factors are integrated by the nervous system to enable adaptive mating-related decision-making in a state- and context-dependent manner is less well understood. In this article, we review recent knowledge regarding the neural basis of flexible mating behaviors from studies of flies and mice. By contrasting the knowledge derived from these two evolutionarily distant model organisms, we discuss potential conserved and divergent neural mechanisms involved in the control of flexible mating behaviors in invertebrate and vertebrate brains.
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Affiliation(s)
- Tomomi Karigo
- Kennedy Krieger Institute, Baltimore, MD, United States,The Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD, United States,*Correspondence: Tomomi Karigo,
| | - David Deutsch
- Sagol Department of Neurobiology, Faculty of Natural Sciences, University of Haifa, Haifa, Israel,David Deutsch,
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7
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Flavell SW, Gogolla N, Lovett-Barron M, Zelikowsky M. The emergence and influence of internal states. Neuron 2022; 110:2545-2570. [PMID: 35643077 PMCID: PMC9391310 DOI: 10.1016/j.neuron.2022.04.030] [Citation(s) in RCA: 48] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Revised: 02/11/2022] [Accepted: 04/27/2022] [Indexed: 01/09/2023]
Abstract
Animal behavior is shaped by a variety of "internal states"-partially hidden variables that profoundly shape perception, cognition, and action. The neural basis of internal states, such as fear, arousal, hunger, motivation, aggression, and many others, is a prominent focus of research efforts across animal phyla. Internal states can be inferred from changes in behavior, physiology, and neural dynamics and are characterized by properties such as pleiotropy, persistence, scalability, generalizability, and valence. To date, it remains unclear how internal states and their properties are generated by nervous systems. Here, we review recent progress, which has been driven by advances in behavioral quantification, cellular manipulations, and neural population recordings. We synthesize research implicating defined subsets of state-inducing cell types, widespread changes in neural activity, and neuromodulation in the formation and updating of internal states. In addition to highlighting the significance of these findings, our review advocates for new approaches to clarify the underpinnings of internal brain states across the animal kingdom.
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Affiliation(s)
- Steven W Flavell
- Picower Institute for Learning and Memory, Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
| | - Nadine Gogolla
- Emotion Research Department, Max Planck Institute of Psychiatry, 80804 Munich, Germany; Circuits for Emotion Research Group, Max Planck Institute of Neurobiology, 82152 Martinsried, Germany.
| | - Matthew Lovett-Barron
- Division of Biological Sciences-Neurobiology Section, University of California, San Diego, La Jolla, CA 92093, USA.
| | - Moriel Zelikowsky
- Department of Neurobiology, University of Utah, Salt Lake City, UT 84112, USA.
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8
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Inagaki HK, Chen S, Daie K, Finkelstein A, Fontolan L, Romani S, Svoboda K. Neural Algorithms and Circuits for Motor Planning. Annu Rev Neurosci 2022; 45:249-271. [PMID: 35316610 DOI: 10.1146/annurev-neuro-092021-121730] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The brain plans and executes volitional movements. The underlying patterns of neural population activity have been explored in the context of movements of the eyes, limbs, tongue, and head in nonhuman primates and rodents. How do networks of neurons produce the slow neural dynamics that prepare specific movements and the fast dynamics that ultimately initiate these movements? Recent work exploits rapid and calibrated perturbations of neural activity to test specific dynamical systems models that are capable of producing the observed neural activity. These joint experimental and computational studies show that cortical dynamics during motor planning reflect fixed points of neural activity (attractors). Subcortical control signals reshape and move attractors over multiple timescales, causing commitment to specific actions and rapid transitions to movement execution. Experiments in rodents are beginning to reveal how these algorithms are implemented at the level of brain-wide neural circuits.
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Affiliation(s)
| | - Susu Chen
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA
| | - Kayvon Daie
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA.,Allen Institute for Neural Dynamics, Seattle, Washington, USA;
| | - Arseny Finkelstein
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA.,Department of Physiology and Pharmacology, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv-Yafo, Israel
| | - Lorenzo Fontolan
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA
| | - Sandro Romani
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA
| | - Karel Svoboda
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA.,Allen Institute for Neural Dynamics, Seattle, Washington, USA;
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9
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Robustness and Flexibility of Neural Function through Dynamical Criticality. ENTROPY 2022; 24:e24050591. [PMID: 35626476 PMCID: PMC9141846 DOI: 10.3390/e24050591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Revised: 04/14/2022] [Accepted: 04/20/2022] [Indexed: 02/01/2023]
Abstract
In theoretical biology, robustness refers to the ability of a biological system to function properly even under perturbation of basic parameters (e.g., temperature or pH), which in mathematical models is reflected in not needing to fine-tune basic parameter constants; flexibility refers to the ability of a system to switch functions or behaviors easily and effortlessly. While there are extensive explorations of the concept of robustness and what it requires mathematically, understanding flexibility has proven more elusive, as well as also elucidating the apparent opposition between what is required mathematically for models to implement either. In this paper we address a number of arguments in theoretical neuroscience showing that both robustness and flexibility can be attained by systems that poise themselves at the onset of a large number of dynamical bifurcations, or dynamical criticality, and how such poising can have a profound influence on integration of information processing and function. Finally, we examine critical map lattices, which are coupled map lattices where the coupling is dynamically critical in the sense of having purely imaginary eigenvalues. We show that these map lattices provide an explicit connection between dynamical criticality in the sense we have used and “edge of chaos” criticality.
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10
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Fixational drift is driven by diffusive dynamics in central neural circuitry. Nat Commun 2022; 13:1697. [PMID: 35361753 PMCID: PMC8971408 DOI: 10.1038/s41467-022-29201-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Accepted: 03/04/2022] [Indexed: 11/08/2022] Open
Abstract
During fixation and between saccades, our eyes undergo diffusive random motion called fixational drift. The role of fixational drift in visual coding and inference has been debated in the past few decades, but the mechanisms that underlie this motion remained unknown. In particular, it has been unclear whether fixational drift arises from peripheral sources, or from central sources within the brain. Here we show that fixational drift is correlated with neural activity, and identify its origin in central neural circuitry within the oculomotor system, upstream to the ocular motoneurons (OMNs). We analyzed a large data set of OMN recordings in the rhesus monkey, alongside precise measurements of eye position, and found that most of the variance of fixational eye drifts must arise upstream of the OMNs. The diffusive statistics of the motion points to the oculomotor integrator, a memory circuit responsible for holding the eyes still between saccades, as a likely source of the motion. Theoretical modeling, constrained by the parameters of the primate oculomotor system, supports this hypothesis by accounting for the amplitude as well as the statistics of the motion. Thus, we propose that fixational ocular drift provides a direct observation of diffusive dynamics in a neural circuit responsible for storage of continuous parameter memory in persistent neural activity. The identification of a mechanistic origin for fixational drift is likely to advance the understanding of its role in visual processing and inference.
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11
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Abstract
The medial entorhinal cortex is part of a neural system for mapping the position of an individual within a physical environment1. Grid cells, a key component of this system, fire in a characteristic hexagonal pattern of locations2, and are organized in modules3 that collectively form a population code for the animal’s allocentric position1. The invariance of the correlation structure of this population code across environments4,5 and behavioural states6,7, independent of specific sensory inputs, has pointed to intrinsic, recurrently connected continuous attractor networks (CANs) as a possible substrate of the grid pattern1,8–11. However, whether grid cell networks show continuous attractor dynamics, and how they interface with inputs from the environment, has remained unclear owing to the small samples of cells obtained so far. Here, using simultaneous recordings from many hundreds of grid cells and subsequent topological data analysis, we show that the joint activity of grid cells from an individual module resides on a toroidal manifold, as expected in a two-dimensional CAN. Positions on the torus correspond to positions of the moving animal in the environment. Individual cells are preferentially active at singular positions on the torus. Their positions are maintained between environments and from wakefulness to sleep, as predicted by CAN models for grid cells but not by alternative feedforward models12. This demonstration of network dynamics on a toroidal manifold provides a population-level visualization of CAN dynamics in grid cells. Simultaneous recordings from hundreds of grid cells in rats, combined with topological data analysis, show that network activity in grid cells resides on a toroidal manifold that is invariant across environments and brain states.
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12
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Hulse BK, Haberkern H, Franconville R, Turner-Evans DB, Takemura SY, Wolff T, Noorman M, Dreher M, Dan C, Parekh R, Hermundstad AM, Rubin GM, Jayaraman V. A connectome of the Drosophila central complex reveals network motifs suitable for flexible navigation and context-dependent action selection. eLife 2021; 10:66039. [PMID: 34696823 PMCID: PMC9477501 DOI: 10.7554/elife.66039] [Citation(s) in RCA: 113] [Impact Index Per Article: 37.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Accepted: 09/07/2021] [Indexed: 11/13/2022] Open
Abstract
Flexible behaviors over long timescales are thought to engage recurrent neural networks in deep brain regions, which are experimentally challenging to study. In insects, recurrent circuit dynamics in a brain region called the central complex (CX) enable directed locomotion, sleep, and context- and experience-dependent spatial navigation. We describe the first complete electron-microscopy-based connectome of the Drosophila CX, including all its neurons and circuits at synaptic resolution. We identified new CX neuron types, novel sensory and motor pathways, and network motifs that likely enable the CX to extract the fly's head-direction, maintain it with attractor dynamics, and combine it with other sensorimotor information to perform vector-based navigational computations. We also identified numerous pathways that may facilitate the selection of CX-driven behavioral patterns by context and internal state. The CX connectome provides a comprehensive blueprint necessary for a detailed understanding of network dynamics underlying sleep, flexible navigation, and state-dependent action selection.
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Affiliation(s)
- Brad K Hulse
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
| | - Hannah Haberkern
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
| | - Romain Franconville
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
| | | | | | - Tanya Wolff
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
| | - Marcella Noorman
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
| | - Marisa Dreher
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
| | - Chuntao Dan
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
| | - Ruchi Parekh
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
| | | | - Gerald M Rubin
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
| | - Vivek Jayaraman
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States
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13
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Socolovsky G, Shamir M. Robust rhythmogenesis via spike-timing-dependent plasticity. Phys Rev E 2021; 104:024413. [PMID: 34525545 DOI: 10.1103/physreve.104.024413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Accepted: 07/21/2021] [Indexed: 11/07/2022]
Abstract
Rhythmic activity has been observed in numerous animal species ranging from insects to humans, and in relation to a wide range of cognitive tasks. Various experimental and theoretical studies have investigated rhythmic activity. The theoretical efforts have mainly been focused on the neuronal dynamics, under the assumption that network connectivity satisfies certain fine-tuning conditions required to generate oscillations. However, it remains unclear how this fine-tuning is achieved. Here we investigated the hypothesis that spike-timing-dependent plasticity (STDP) can provide the underlying mechanism for tuning synaptic connectivity to generate rhythmic activity. We addressed this question in a modeling study. We examined STDP dynamics in the framework of a network of excitatory and inhibitory neuronal populations that has been suggested to underlie the generation of oscillations in the gamma range. Mean-field Fokker-Planck equations for the synaptic weight dynamics are derived in the limit of slow learning. We drew on this approximation to determine which types of STDP rules drive the system to exhibit rhythmic activity, and we demonstrate how the parameters that characterize the plasticity rule govern the rhythmic activity. Finally, we propose a mechanism that can ensure the robustness of self-developing processes in general, and for rhythmogenesis in particular.
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Affiliation(s)
- Gabi Socolovsky
- Department of Physics, Faculty of Natural Sciences, Ben-Gurion University of the Negev, Be'er-Sheva 8410501, Israel.,Zlotowski Center for Neuroscience, Ben-Gurion University of the Negev, Be'er-Sheva 8410501, Israel
| | - Maoz Shamir
- Department of Physics, Faculty of Natural Sciences, Ben-Gurion University of the Negev, Be'er-Sheva 8410501, Israel.,Zlotowski Center for Neuroscience, Ben-Gurion University of the Negev, Be'er-Sheva 8410501, Israel.,Department of Physiology and Cell Biology, Faculty of Health Sciences, Ben-Gurion University of the Negev, Be'er-Sheva 8410501, Israel
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14
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Ji N, Venkatachalam V, Rodgers HD, Hung W, Kawano T, Clark CM, Lim M, Alkema MJ, Zhen M, Samuel ADT. Corollary discharge promotes a sustained motor state in a neural circuit for navigation. eLife 2021; 10:e68848. [PMID: 33880993 PMCID: PMC8139836 DOI: 10.7554/elife.68848] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2021] [Accepted: 04/08/2021] [Indexed: 02/06/2023] Open
Abstract
Animals exhibit behavioral and neural responses that persist on longer timescales than transient or fluctuating stimulus inputs. Here, we report that Caenorhabditis elegans uses feedback from the motor circuit to a sensory processing interneuron to sustain its motor state during thermotactic navigation. By imaging circuit activity in behaving animals, we show that a principal postsynaptic partner of the AFD thermosensory neuron, the AIY interneuron, encodes both temperature and motor state information. By optogenetic and genetic manipulation of this circuit, we demonstrate that the motor state representation in AIY is a corollary discharge signal. RIM, an interneuron that is connected with premotor interneurons, is required for this corollary discharge. Ablation of RIM eliminates the motor representation in AIY, allows thermosensory representations to reach downstream premotor interneurons, and reduces the animal's ability to sustain forward movements during thermotaxis. We propose that feedback from the motor circuit to the sensory processing circuit underlies a positive feedback mechanism to generate persistent neural activity and sustained behavioral patterns in a sensorimotor transformation.
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Affiliation(s)
- Ni Ji
- Department of Physics and Center for Brain Science, Harvard UniversityCambridgeUnited States
| | - Vivek Venkatachalam
- Department of Physics and Center for Brain Science, Harvard UniversityCambridgeUnited States
| | - Hillary Denise Rodgers
- Department of Physics and Center for Brain Science, Harvard UniversityCambridgeUnited States
- Department of Neurobiology, University of Massachusetts Medical SchoolWorcesterUnited States
| | - Wesley Hung
- Lunenfeld-Tanenbaum Research Institute, Mount Sinai HospitalTorontoCanada
- Departments of Molecular Genetics, and Physiology, University of TorontoTorontoCanada
| | - Taizo Kawano
- Lunenfeld-Tanenbaum Research Institute, Mount Sinai HospitalTorontoCanada
- Departments of Molecular Genetics, and Physiology, University of TorontoTorontoCanada
| | - Christopher M Clark
- Department of Neurobiology, University of Massachusetts Medical SchoolWorcesterUnited States
| | - Maria Lim
- Lunenfeld-Tanenbaum Research Institute, Mount Sinai HospitalTorontoCanada
- Departments of Molecular Genetics, and Physiology, University of TorontoTorontoCanada
| | - Mark J Alkema
- Department of Neurobiology, University of Massachusetts Medical SchoolWorcesterUnited States
| | - Mei Zhen
- Lunenfeld-Tanenbaum Research Institute, Mount Sinai HospitalTorontoCanada
- Departments of Molecular Genetics, and Physiology, University of TorontoTorontoCanada
| | - Aravinthan DT Samuel
- Department of Physics and Center for Brain Science, Harvard UniversityCambridgeUnited States
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15
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Fanthomme A, Monasson R. Low-Dimensional Manifolds Support Multiplexed Integrations in Recurrent Neural Networks. Neural Comput 2021; 33:1063-1112. [PMID: 33513327 DOI: 10.1162/neco_a_01366] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Accepted: 11/04/2020] [Indexed: 11/04/2022]
Abstract
We study the learning dynamics and the representations emerging in recurrent neural networks (RNNs) trained to integrate one or multiple temporal signals. Combining analytical and numerical investigations, we characterize the conditions under which an RNN with n neurons learns to integrate D(≪n) scalar signals of arbitrary duration. We show, for linear, ReLU, and sigmoidal neurons, that the internal state lives close to a D-dimensional manifold, whose shape is related to the activation function. Each neuron therefore carries, to various degrees, information about the value of all integrals. We discuss the deep analogy between our results and the concept of mixed selectivity forged by computational neuroscientists to interpret cortical recordings.
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Affiliation(s)
- Arnaud Fanthomme
- Laboratoire de Physique de l'Ecole Normale Supérieure PSLand CNRS UMR 8023, Sorbonne Université, 75005 Paris, France,
| | - Rémi Monasson
- Laboratoire de Physique de l'Ecole Normale Supérieure PSLand CNRS UMR 8023, Sorbonne Université, 75005 Paris, France,
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16
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Friedrich RW, Wanner AA. Dense Circuit Reconstruction to Understand Neuronal Computation: Focus on Zebrafish. Annu Rev Neurosci 2021; 44:275-293. [PMID: 33730512 DOI: 10.1146/annurev-neuro-110220-013050] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The dense reconstruction of neuronal wiring diagrams from volumetric electron microscopy data has the potential to generate fundamentally new insights into mechanisms of information processing and storage in neuronal circuits. Zebrafish provide unique opportunities for dynamical connectomics approaches that combine reconstructions of wiring diagrams with measurements of neuronal population activity and behavior. Such approaches have the power to reveal higher-order structure in wiring diagrams that cannot be detected by sparse sampling of connectivity and that is essential for neuronal computations. In the brain stem, recurrently connected neuronal modules were identified that can account for slow, low-dimensional dynamics in an integrator circuit. In the spinal cord, connectivity specifies functional differences between premotor interneurons. In the olfactory bulb, tuning-dependent connectivity implements a whitening transformation that is based on the selective suppression of responses to overrepresented stimulus features. These findings illustrate the potential of dynamical connectomics in zebrafish to analyze the circuit mechanisms underlying higher-order neuronal computations.
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Affiliation(s)
- Rainer W Friedrich
- Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland; .,Faculty of Natural Sciences, University of Basel, 4003 Basel, Switzerland
| | - Adrian A Wanner
- Princeton Neuroscience Institute, Princeton University, Princeton, New Jersey 08544, USA;
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17
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Deutsch D, Pacheco D, Encarnacion-Rivera L, Pereira T, Fathy R, Clemens J, Girardin C, Calhoun A, Ireland E, Burke A, Dorkenwald S, McKellar C, Macrina T, Lu R, Lee K, Kemnitz N, Ih D, Castro M, Halageri A, Jordan C, Silversmith W, Wu J, Seung HS, Murthy M. The neural basis for a persistent internal state in Drosophila females. eLife 2020; 9:e59502. [PMID: 33225998 PMCID: PMC7787663 DOI: 10.7554/elife.59502] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2020] [Accepted: 11/18/2020] [Indexed: 12/13/2022] Open
Abstract
Sustained changes in mood or action require persistent changes in neural activity, but it has been difficult to identify the neural circuit mechanisms that underlie persistent activity and contribute to long-lasting changes in behavior. Here, we show that a subset of Doublesex+ pC1 neurons in the Drosophila female brain, called pC1d/e, can drive minutes-long changes in female behavior in the presence of males. Using automated reconstruction of a volume electron microscopic (EM) image of the female brain, we map all inputs and outputs to both pC1d and pC1e. This reveals strong recurrent connectivity between, in particular, pC1d/e neurons and a specific subset of Fruitless+ neurons called aIPg. We additionally find that pC1d/e activation drives long-lasting persistent neural activity in brain areas and cells overlapping with the pC1d/e neural network, including both Doublesex+ and Fruitless+ neurons. Our work thus links minutes-long persistent changes in behavior with persistent neural activity and recurrent circuit architecture in the female brain.
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Affiliation(s)
- David Deutsch
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Diego Pacheco
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | | | - Talmo Pereira
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Ramie Fathy
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Jan Clemens
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Cyrille Girardin
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Adam Calhoun
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Elise Ireland
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Austin Burke
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Sven Dorkenwald
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
- Department of Computer Science, Princeton UniversityPrincetonUnited States
| | - Claire McKellar
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Thomas Macrina
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
- Department of Computer Science, Princeton UniversityPrincetonUnited States
| | - Ran Lu
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Kisuk Lee
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
- Brain & Cognitive Science Department, Massachusetts Institute of TechnologyCambridgeUnited States
| | - Nico Kemnitz
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Dodam Ih
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Manuel Castro
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Akhilesh Halageri
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Chris Jordan
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - William Silversmith
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - Jingpeng Wu
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
| | - H Sebastian Seung
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
- Department of Computer Science, Princeton UniversityPrincetonUnited States
| | - Mala Murthy
- Princeton Neuroscience Institute, Princeton UniversityPrincetonUnited States
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18
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Cerebellar Roles in Frequency Competitive Motor Learning of the Vestibulo-ocular Reflex. Neuroscience 2020; 462:205-219. [PMID: 32946949 DOI: 10.1016/j.neuroscience.2020.09.016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Revised: 08/14/2020] [Accepted: 09/02/2020] [Indexed: 02/01/2023]
Abstract
Biological motions commonly contain multiple frequency components in which each fundamental has to be adjusted by motor learning to acquire a new motor skill or maintain acquired skills. At times during this motor performance one frequency component needs to be enhanced (gain-up) while another is suppressed (gain-down). This pattern of simultaneous gain-up and -down adjustments at different frequencies is called frequency competitive motor learning. Currently we investigated cerebellar roles in this behavior utilizing the goldfish vestibulo-ocular reflex (VOR). Previously, VOR motor learning was shown in primates to be frequency selective and exhibit frequency competitive motor learning. Here we demonstrate that the goldfish VOR performs frequency competitive motor learning when high and low frequency components are trained to gain-up and gain-down, respectively. However, when the two frequency components were trained in the opposite directions only gain-up component was observed. We also found that cerebellectomy precluded any frequency competitive VOR motor learning. Complementary single unit recordings from vestibulo-cerebellar Purkinje cells revealed changes in firing modulation along with gain-down learning, but not with gain-up learning irrespective of frequency. These results demonstrate that the cerebellum is required for all frequency competitive VOR motor learning and Purkinje cell activity therein is well correlated with all gain-down behaviors independent of frequency. However, frequency competitive gain-up learning requires intact, recursive brainstem/cerebellar pathways. Collectively these findings support the idea that VOR gain-up and gain-down learning utilize separate brainstem/cerebellar circuitry that, in turn, clearly underlies the unique ability of the oculomotor system to deal with multiple frequency components.
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19
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Sederberg A, Nemenman I. Randomly connected networks generate emergent selectivity and predict decoding properties of large populations of neurons. PLoS Comput Biol 2020; 16:e1007875. [PMID: 32379751 PMCID: PMC7237045 DOI: 10.1371/journal.pcbi.1007875] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Revised: 05/19/2020] [Accepted: 04/14/2020] [Indexed: 01/12/2023] Open
Abstract
Modern recording methods enable sampling of thousands of neurons during the performance of behavioral tasks, raising the question of how recorded activity relates to theoretical models. In the context of decision making, functional connectivity between choice-selective cortical neurons was recently reported. The straightforward interpretation of these data suggests the existence of selective pools of inhibitory and excitatory neurons. Computationally investigating an alternative mechanism for these experimental observations, we find that a randomly connected network of excitatory and inhibitory neurons generates single-cell selectivity, patterns of pairwise correlations, and the same ability of excitatory and inhibitory populations to predict choice, as in experimental observations. Further, we predict that, for this task, there are no anatomically defined subpopulations of neurons representing choice, and that choice preference of a particular neuron changes with the details of the task. We suggest that distributed stimulus selectivity and functional organization in population codes could be emergent properties of randomly connected networks.
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Affiliation(s)
- Audrey Sederberg
- Department of Physics, Emory University, Atlanta, Georgia, United States of America
- Initiative in Theory and Modeling of Living Systems, Emory University, Atlanta, Georgia, United States of America
| | - Ilya Nemenman
- Department of Physics, Emory University, Atlanta, Georgia, United States of America
- Initiative in Theory and Modeling of Living Systems, Emory University, Atlanta, Georgia, United States of America
- Department of Biology, Emory University, Atlanta, Georgia, United States of America
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20
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Different Activation Mechanisms of Excitatory Networks in the Rat Oculomotor Integrators for Vertical and Horizontal Gaze Holding. eNeuro 2020; 7:ENEURO.0364-19.2019. [PMID: 31852758 PMCID: PMC6975485 DOI: 10.1523/eneuro.0364-19.2019] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Revised: 12/09/2019] [Accepted: 12/09/2019] [Indexed: 11/21/2022] Open
Abstract
Gaze holding in the horizontal and vertical directions is separately controlled via the oculomotor neural integrators, the prepositus hypoglossi nucleus (PHN) and the interstitial nucleus of Cajal (INC), respectively. Our previous in vitro studies demonstrated that transient, high-frequency local stimulation of the PHN and the INC increased the frequency of spontaneous EPSCs that lasted for several seconds. The sustained EPSC response of PHN neurons was attributed to the activation of local excitatory networks primarily mediated via Ca2+-permeable AMPA (CP-AMPA) receptors and Ca2+-activated nonselective cation (CAN) channels. However, the contribution of CP-AMPA receptors to the activation of INC excitatory networks appeared to be small. In this study, we clarified the mechanisms of excitatory network activation in the PHN and INC using whole-cell recordings in rat brainstem slices. Although physiological and histological analyses showed that neurons that expressed CP-AMPA receptors existed not only in the PHN but also in the INC, the effect of a CP-AMPA receptor antagonist on the sustained EPSC response was significantly weaker in INC neurons than in PHN neurons. Meanwhile, the effect of an NMDA receptor antagonist on the sustained EPSC response was significantly stronger in INC neurons than in PHN neurons. Furthermore, the current and the charge transfer mediated via NMDA receptors were significantly larger in INC neurons than in PHN neurons. These results strongly suggest that these excitatory networks are activated via different synaptic mechanisms: a CP-AMPA receptor and CAN channel-dependent mechanism and an NMDA receptor-dependent mechanism in horizontal and vertical integrators, respectively.
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21
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Brysch C, Leyden C, Arrenberg AB. Functional architecture underlying binocular coordination of eye position and velocity in the larval zebrafish hindbrain. BMC Biol 2019; 17:110. [PMID: 31884959 PMCID: PMC6936144 DOI: 10.1186/s12915-019-0720-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Accepted: 11/06/2019] [Indexed: 12/24/2022] Open
Abstract
BACKGROUND The oculomotor integrator (OI) in the vertebrate hindbrain transforms eye velocity input into persistent position coding output, which plays a crucial role in retinal image stability. For a mechanistic understanding of the integrator function and eye position control, knowledge about the tuning of the OI and other oculomotor nuclei is needed. Zebrafish are increasingly used to study integrator function and sensorimotor circuits, yet the precise neuronal tuning to motor variables remains uncharacterized. RESULTS Here, we recorded cellular calcium signals while evoking monocular and binocular optokinetic eye movements at different slow-phase eye velocities. Our analysis reveals the anatomical distributions of motoneurons and internuclear neurons in the nucleus abducens as well as those of oculomotor neurons in caudally adjacent hindbrain volumes. Each neuron is tuned to eye position and/or velocity to variable extents and is only activated after surpassing particular eye position and velocity thresholds. While the abducens (rhombomeres 5/6) mainly codes for eye position, in rhombomeres 7/8, a velocity-to-position coding gradient exists along the rostro-caudal axis, which likely corresponds to the oculomotor structures storing velocity and position, and is in agreement with a feedforward mechanism of persistent activity generation. Position encoding neurons are recruited at eye position thresholds distributed across the behaviourally relevant dynamic range, while velocity-encoding neurons have more centred firing thresholds for velocity. In the abducens, neurons coding exclusively for one eye intermingle with neurons coding for both eyes. Many of these binocular neurons are preferentially active during conjugate eye movements and less active during monocular eye movements. This differential recruitment during monocular versus conjugate tasks represents a functional diversification in the final common motor pathway. CONCLUSIONS We localized and functionally characterized the repertoire of oculomotor neurons in the zebrafish hindbrain. Our findings provide evidence for a mixed but task-specific binocular code and suggest that generation of persistent activity is organized along the rostro-caudal axis in the hindbrain.
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Affiliation(s)
- Christian Brysch
- Werner Reichardt Centre for Integrative Neuroscience and Institute for Neurobiology, University of Tübingen, 72076, Tübingen, Germany
- Graduate Training Centre of Neuroscience, University of Tübingen, 72074, Tübingen, Germany
| | - Claire Leyden
- Werner Reichardt Centre for Integrative Neuroscience and Institute for Neurobiology, University of Tübingen, 72076, Tübingen, Germany
- Graduate Training Centre of Neuroscience, University of Tübingen, 72074, Tübingen, Germany
| | - Aristides B Arrenberg
- Werner Reichardt Centre for Integrative Neuroscience and Institute for Neurobiology, University of Tübingen, 72076, Tübingen, Germany.
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22
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Bertolini G, Romano F, Feddermann-Demont N, Straumann D, Tarnutzer AA, Ramat S. Non-linearity in gaze holding: Experimental results and possible mechanisms. PROGRESS IN BRAIN RESEARCH 2019; 248:167-181. [DOI: 10.1016/bs.pbr.2019.04.033] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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23
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Sadeghpour S, Zee DS, Leigh RJ. Clinical applications of control systems models: The neural integrators for eye movements. PROGRESS IN BRAIN RESEARCH 2019; 248:103-114. [DOI: 10.1016/bs.pbr.2018.12.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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24
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Koutsikou S, Merrison‐Hort R, Buhl E, Ferrario A, Li W, Borisyuk R, Soffe SR, Roberts A. A simple decision to move in response to touch reveals basic sensory memory and mechanisms for variable response times. J Physiol 2018; 596:6219-6233. [PMID: 30074236 PMCID: PMC6292811 DOI: 10.1113/jp276356] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Accepted: 07/13/2018] [Indexed: 01/28/2023] Open
Abstract
KEY POINTS Short-term working memory and decision-making are usually studied in the cerebral cortex; in many models of simple decision making, sensory signals build slowly and noisily to threshold to initiate a motor response after long, variable delays. When touched, hatchling frog tadpoles decide whether to swim; we define the long and variable delays to swimming and use whole-cell recordings to uncover the neurons and processes responsible. Firing in sensory and sensory pathway neurons is short latency, and too brief and invariant to explain these delays, while recordings from hindbrain reticulospinal neurons controlling swimming reveal a prolonged and variable build-up of synaptic excitation which can reach firing threshold and initiate swimming. We propose this excitation provides a sensory memory of the stimulus and may be generated by small reverberatory hindbrain networks. Our results uncover fundamental network mechanisms that allow animals to remember brief sensory stimuli and delay simple motor decisions. ABSTRACT Many motor responses to sensory input, like locomotion or eye movements, are much slower than reflexes. Can simpler animals provide fundamental answers about the cellular mechanisms for motor decisions? Can we observe the 'accumulation' of excitation to threshold proposed to underlie decision making elsewhere? We explore how somatosensory touch stimulation leads to the decision to swim in hatchling Xenopus tadpoles. Delays measured to swimming in behaving and immobilised tadpoles are long and variable. Activity in their extensively studied sensory and sensory pathway neurons is too short-lived to explain these response delays. Instead, whole-cell recordings from the hindbrain reticulospinal neurons that drive swimming show that these receive prolonged, variable synaptic excitation lasting for nearly a second following a brief stimulus. They fire and initiate swimming when this excitation reaches threshold. Analysis of the summation of excitation requires us to propose extended firing in currently undefined presynaptic hindbrain neurons. Simple models show that a small excitatory recurrent-network inserted in the sensory pathway can mimic this process. We suggest that such a network may generate slow, variable summation of excitation to threshold. This excitation provides a simple memory of the sensory stimulus. It allows temporal and spatial integration of sensory inputs and explains the long, variable delays to swimming. The process resembles the 'accumulation' of excitation proposed for cortical circuits in mammals. We conclude that fundamental elements of sensory memory and decision making are present in the brainstem at a surprisingly early stage in development.
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Affiliation(s)
- Stella Koutsikou
- School of Biological SciencesUniversity of Bristol24 Tyndall AvenueBristolBS8 1TQUK
- Medway School of PharmacyUniversity of KentAnson Building, Central AvenueChatham MaritimeME4 4 TBUK
| | - Robert Merrison‐Hort
- School of ComputingElectronics and MathematicsUniversity of PlymouthDrake CircusPlymouthPL4 8AAUK
| | - Edgar Buhl
- School of Biological SciencesUniversity of Bristol24 Tyndall AvenueBristolBS8 1TQUK
| | - Andrea Ferrario
- School of ComputingElectronics and MathematicsUniversity of PlymouthDrake CircusPlymouthPL4 8AAUK
| | - Wen‐Chang Li
- School of Psychology and NeuroscienceUniversity of St Andrews9 South StreetSt AndrewsFifeKY16 9JPUK
| | - Roman Borisyuk
- School of ComputingElectronics and MathematicsUniversity of PlymouthDrake CircusPlymouthPL4 8AAUK
| | - Stephen R. Soffe
- School of Biological SciencesUniversity of Bristol24 Tyndall AvenueBristolBS8 1TQUK
| | - Alan Roberts
- School of Biological SciencesUniversity of Bristol24 Tyndall AvenueBristolBS8 1TQUK
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25
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Tanimoto Y, Kimura KD. Neuronal, mathematical, and molecular bases of perceptual decision-making in C. elegans. Neurosci Res 2018; 140:3-13. [PMID: 30389573 DOI: 10.1016/j.neures.2018.10.010] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2018] [Revised: 10/12/2018] [Accepted: 10/15/2018] [Indexed: 12/01/2022]
Abstract
Animals process sensory information from the environment to make behavioral decisions. Although environmental information may be ambiguous or gradually changing, animals can still choose one behavioral option among several through perceptual decision-making. Perceptual decision-making has been intensively studied in primates and rodents, and neural activity that accumulates sensory information has been shown to be crucial. However, it remains unclear how the accumulating neural activity is generated, and whether such activity is a conserved decision-making strategy across the animal kingdom. Here, we review the previous perceptual decision-making studies in vertebrates and invertebrates and our recent achievement in an invertebrate model animal, the nematode Caenorhabditis elegans. In the study, we analyzed temporal dynamics of neuronal activity during perceptual decision-making in navigational behavior of C. elegans. We identified neural activity that accumulates sensory information and elucidated the molecular mechanism for the accumulating activity, which may be relevant to decision-making across the animal kingdom.
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Affiliation(s)
- Yuki Tanimoto
- Department of Biological Sciences, Osaka University, Toyonaka, Osaka, 560-0043, Japan.
| | - Koutarou D Kimura
- Department of Biological Sciences, Osaka University, Toyonaka, Osaka, 560-0043, Japan.
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26
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Sugioka M, Saito Y. Purinergic modulation of neuronal activity in the rat prepositus hypoglossi nucleus. Eur J Neurosci 2018; 48:3354-3366. [PMID: 30339313 DOI: 10.1111/ejn.14210] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Revised: 09/03/2018] [Accepted: 10/04/2018] [Indexed: 11/30/2022]
Abstract
In the nervous system, adenosine 5'-trisphosphate (ATP) functions as a neurotransmitter and binds to ionotropic P2X receptors and metabotropic P2Y receptors. Although ATP receptors are expressed in the prepositus hypoglossi nucleus (PHN), which is a brainstem structure involved in controlling horizontal gaze, it is unclear whether ATP indeed affects the activity of PHN neurons. In this study, we investigated the effects of ATP on spontaneous firing of PHN neurons using whole-cell recordings in rat brainstem slices. Bath application of ATP increased or decreased the spontaneous firing rate of the neurons in a dose-dependent manner, indicating that ATP indeed affects PHN neuronal activity. To clarify the mechanisms of the ATP effects, we investigated the current responses of PHN neurons to a local application of ATP. The ATP application induced a fast inward (FI) current, a slow inward (SI) current, and/or a slow outward (SO) current in the neurons. The agonists of P2X and P2Y receptors induced FI and SI currents, respectively. The SO currents were not induced by the ATP agonists but were induced by adenosine, which may be extracellularly converted from ATP by ectonucleotidases. An antagonist of adenosine P1 (A1 ) receptors abolished the adenosine-induced SO currents and bath application of adenosine decreased the spontaneous firing rate of all PHN neurons tested. These results indicate that PHN neurons express functional purinoceptors and show that the FI, SI, and SO currents were mediated via P2X, P2Y, and A1 receptors, respectively.
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Affiliation(s)
- Miho Sugioka
- Department of Neurophysiology, Nara Medical University, Kashihara, Nara, Japan
| | - Yasuhiko Saito
- Department of Neurophysiology, Nara Medical University, Kashihara, Nara, Japan
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27
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Piet AT, El Hady A, Brody CD. Rats adopt the optimal timescale for evidence integration in a dynamic environment. Nat Commun 2018; 9:4265. [PMID: 30323280 PMCID: PMC6189050 DOI: 10.1038/s41467-018-06561-y] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Accepted: 09/12/2018] [Indexed: 12/19/2022] Open
Abstract
Decision making in dynamic environments requires discounting old evidence that may no longer inform the current state of the world. Previous work found that humans discount old evidence in a dynamic environment, but do not discount at the optimal rate. Here we investigated whether rats can optimally discount evidence in a dynamic environment by adapting the timescale over which they accumulate evidence. Using discrete evidence pulses, we exactly compute the optimal inference process. We show that the optimal timescale for evidence discounting depends on both the stimulus statistics and noise in sensory processing. When both of these components are taken into account, rats accumulate and discount evidence with the optimal timescale. Finally, by changing the volatility of the environment, we demonstrate experimental control over the rats' accumulation timescale. The mechanisms supporting integration are a subject of extensive study, and experimental control over these timescales may open new avenues of investigation.
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Affiliation(s)
- Alex T Piet
- Princeton Neuroscience Institute, Princeton University, Princeton, 08544, USA
| | - Ahmed El Hady
- Princeton Neuroscience Institute, Princeton University, Princeton, 08544, USA. .,Howard Hughes Medical Institute, Princeton University, Princeton, 08544, USA.
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton University, Princeton, 08544, USA. .,Howard Hughes Medical Institute, Princeton University, Princeton, 08544, USA. .,Department of Molecular Biology, Princeton University, Princeton, 08544, USA.
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28
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Rhythmogenesis evolves as a consequence of long-term plasticity of inhibitory synapses. Sci Rep 2018; 8:13050. [PMID: 30158555 PMCID: PMC6115462 DOI: 10.1038/s41598-018-31412-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2018] [Accepted: 08/07/2018] [Indexed: 11/08/2022] Open
Abstract
Brain rhythms are widely believed to reflect numerous cognitive processes. Changes in rhythmicity have been associated with pathological states. However, the mechanism underlying these rhythms remains unknown. Here, we present a theoretical analysis of the evolvement of rhythm generating capabilities in neuronal circuits. We tested the hypothesis that brain rhythms can be acquired via an intrinsic unsupervised learning process of activity dependent plasticity. Specifically, we focused on spike timing dependent plasticity (STDP) of inhibitory synapses. We detail how rhythmicity can develop via STDP under certain conditions that serve as a natural prediction of the hypothesis. We show how global features of the STDP rule govern and stabilize the resultant rhythmic activity. Finally, we demonstrate how rhythmicity is retained even in the face of synaptic variability. This study suggests a role for inhibitory plasticity that is beyond homeostatic processes.
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29
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Xiao Z, Wang B, Sornborger AT, Tao L. Mutual Information and Information Gating in Synfire Chains. ENTROPY 2018; 20:e20020102. [PMID: 33265193 PMCID: PMC7512595 DOI: 10.3390/e20020102] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Revised: 01/29/2018] [Accepted: 01/30/2018] [Indexed: 11/27/2022]
Abstract
Coherent neuronal activity is believed to underlie the transfer and processing of information in the brain. Coherent activity in the form of synchronous firing and oscillations has been measured in many brain regions and has been correlated with enhanced feature processing and other sensory and cognitive functions. In the theoretical context, synfire chains and the transfer of transient activity packets in feedforward networks have been appealed to in order to describe coherent spiking and information transfer. Recently, it has been demonstrated that the classical synfire chain architecture, with the addition of suitably timed gating currents, can support the graded transfer of mean firing rates in feedforward networks (called synfire-gated synfire chains—SGSCs). Here we study information propagation in SGSCs by examining mutual information as a function of layer number in a feedforward network. We explore the effects of gating and noise on information transfer in synfire chains and demonstrate that asymptotically, two main regions exist in parameter space where information may be propagated and its propagation is controlled by pulse-gating: a large region where binary codes may be propagated, and a smaller region near a cusp in parameter space that supports graded propagation across many layers.
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Affiliation(s)
- Zhuocheng Xiao
- Department of Mathematics, University of Arizona, Tucson, AZ 85721, USA
| | - Binxu Wang
- Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, School of Life Sciences, Peking University, Beijing 100871, China
- Yuanpei School, Peking University, Beijing 100871, China
| | - Andrew T. Sornborger
- Information Sciences, CCS-3, Los Alamos National Laboratory, Los Alamos, NM 87545, USA
- Department of Mathematics, University of California, Davis, CA 95616, USA
- Correspondence: (A.T.S.); (L.T.)
| | - Louis Tao
- Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, School of Life Sciences, Peking University, Beijing 100871, China
- Center for Quantitative Biology, Peking University, Beijing 100871, China
- Correspondence: (A.T.S.); (L.T.)
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30
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Abstract
The ability of sensory networks to transiently store information on the scale of seconds can confer many advantages in processing time-varying stimuli. How a network could store information on such intermediate time scales, between typical neurophysiological time scales and those of long-term memory, is typically attributed to persistent neural activity. An alternative mechanism which might allow for such information storage is through temporary modifications to the neural connectivity which decay on the same second-long time scale as the underlying memories. Earlier work that has explored this method has done so by emphasizing one attractor from a limited, pre-defined set. Here, we describe an alternative, a Transient Attractor network, which can learn any pattern presented to it, store several simultaneously, and robustly recall them on demand using targeted probes in a manner reminiscent of Hopfield networks. We hypothesize that such functionality could be usefully embedded within sensory cortex, and allow for a flexibly-gated short-term memory, as well as conferring the ability of the network to perform automatic de-noising, and separation of input signals into distinct perceptual objects. We demonstrate that the stored information can be refreshed to extend storage time, is not sensitive to noise in the system, and can be turned on or off by simple neuromodulation. The diverse capabilities of transient attractors, as well as their resemblance to many features observed in sensory cortex, suggest the possibility that their actions might underlie neural processing in many sensory areas.
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31
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Population-scale organization of cerebellar granule neuron signaling during a visuomotor behavior. Sci Rep 2017; 7:16240. [PMID: 29176570 PMCID: PMC5701187 DOI: 10.1038/s41598-017-15938-w] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2017] [Accepted: 11/03/2017] [Indexed: 11/10/2022] Open
Abstract
Granule cells at the input layer of the cerebellum comprise over half the neurons in the human brain and are thought to be critical for learning. However, little is known about granule neuron signaling at the population scale during behavior. We used calcium imaging in awake zebrafish during optokinetic behavior to record transgenically identified granule neurons throughout a cerebellar population. A significant fraction of the population was responsive at any given time. In contrast to core precerebellar populations, granule neuron responses were relatively heterogeneous, with variation in the degree of rectification and the balance of positive versus negative changes in activity. Functional correlations were strongest for nearby cells, with weak spatial gradients in the degree of rectification and the average sign of response. These data open a new window upon cerebellar function and suggest granule layer signals represent elementary building blocks under-represented in core sensorimotor pathways, thereby enabling the construction of novel patterns of activity for learning.
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32
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Comparisons of Neuronal and Excitatory Network Properties between the Rat Brainstem Nuclei that Participate in Vertical and Horizontal Gaze Holding. eNeuro 2017; 4:eN-NWR-0180-17. [PMID: 28966973 PMCID: PMC5616193 DOI: 10.1523/eneuro.0180-17.2017] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Revised: 08/23/2017] [Accepted: 08/29/2017] [Indexed: 11/21/2022] Open
Abstract
Gaze holding is primarily controlled by neural structures including the prepositus hypoglossi nucleus (PHN) for horizontal gaze and the interstitial nucleus of Cajal (INC) for vertical and torsional gaze. In contrast to the accumulating findings of the PHN, there is no report regarding the membrane properties of INC neurons or the local networks in the INC. In this study, to verify whether the neural structure of the INC is similar to that of the PHN, we investigated the neuronal and network properties of the INC using whole-cell recordings in rat brainstem slices. Three types of afterhyperpolarization (AHP) profiles and five firing patterns observed in PHN neurons were also observed in INC neurons. However, the overall distributions based on the AHP profile and the firing patterns of INC neurons were different from those of PHN neurons. The application of burst stimulation to a nearby site of a recorded INC neuron induced an increase in the frequency of spontaneous EPSCs. The duration of the increased EPSC frequency of INC neurons was not significantly different from that of PHN neurons. The percent of duration reduction induced by a Ca2+-permeable AMPA (CP-AMPA) receptor antagonist was significantly smaller in the INC than in the PHN. These findings suggest that local excitatory networks that activate sustained EPSC responses also exist in the INC, but their activation mechanisms including the contribution of CP-AMPA receptors differ between the INC and the PHN.
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33
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Vishwanathan A, Daie K, Ramirez AD, Lichtman JW, Aksay ERF, Seung HS. Electron Microscopic Reconstruction of Functionally Identified Cells in a Neural Integrator. Curr Biol 2017; 27:2137-2147.e3. [PMID: 28712570 DOI: 10.1016/j.cub.2017.06.028] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2016] [Revised: 03/02/2017] [Accepted: 06/09/2017] [Indexed: 11/27/2022]
Abstract
Neural integrators are involved in a variety of sensorimotor and cognitive behaviors. The oculomotor system contains a simple example, a hindbrain neural circuit that takes velocity signals as inputs and temporally integrates them to control eye position. Here we investigated the structural underpinnings of temporal integration in the larval zebrafish by first identifying integrator neurons using two-photon calcium imaging and then reconstructing the same neurons through serial electron microscopic analysis. Integrator neurons were identified as those neurons with activities highly correlated with eye position during spontaneous eye movements. Three morphological classes of neurons were observed: ipsilaterally projecting neurons located medially, contralaterally projecting neurons located more laterally, and a population at the extreme lateral edge of the hindbrain for which we were not able to identify axons. Based on their somatic locations, we inferred that neurons with only ipsilaterally projecting axons are glutamatergic, whereas neurons with only contralaterally projecting axons are largely GABAergic. Dendritic and synaptic organization of the ipsilaterally projecting neurons suggests a broad sampling from inputs on the ipsilateral side. We also observed the first conclusive evidence of synapses between integrator neurons, which have long been hypothesized by recurrent network models of integration via positive feedback.
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Affiliation(s)
| | - Kayvon Daie
- Institute for Computational Biomedicine and Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY 10021, USA
| | - Alexandro D Ramirez
- Institute for Computational Biomedicine and Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY 10021, USA
| | - Jeff W Lichtman
- Department of Molecular and Cellular Biology and Center for Brain Science, Harvard University, Cambridge, MA 02138, USA
| | - Emre R F Aksay
- Institute for Computational Biomedicine and Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY 10021, USA
| | - H Sebastian Seung
- Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA; Computer Science Department, Princeton University, Princeton, NJ 08544, USA.
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34
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Takeuchi M, Inoue C, Goshima A, Nagao Y, Shimizu K, Miyamoto H, Shimizu T, Hashimoto H, Yonemura S, Kawahara A, Hirata Y, Yoshida M, Hibi M. Medaka and zebrafishcontactin1mutants as a model for understanding neural circuits for motor coordination. Genes Cells 2017. [DOI: 10.1111/gtc.12509] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Miki Takeuchi
- Laboratory of Organogenesis and Organ Function; Bioscience and Biotechnology Center; Nagoya University; Furo Chikusa Nagoya Aichi 464-8601 Japan
| | - Chikako Inoue
- Laboratory of Organogenesis and Organ Function; Bioscience and Biotechnology Center; Nagoya University; Furo Chikusa Nagoya Aichi 464-8601 Japan
| | - Akiko Goshima
- Division of Biological Science; Graduate School of Science; Nagoya University; Furo Chikusa Nagoya Aichi 464-8602 Japan
| | - Yusuke Nagao
- Laboratory of Organogenesis and Organ Function; Bioscience and Biotechnology Center; Nagoya University; Furo Chikusa Nagoya Aichi 464-8601 Japan
| | - Koichi Shimizu
- Division of Biological Science; Graduate School of Science; Nagoya University; Furo Chikusa Nagoya Aichi 464-8602 Japan
| | - Hiroki Miyamoto
- Department of Computer Science; Chubu University; 1200 Matsumoto Kasugai Aichi 485-8501 Japan
| | - Takashi Shimizu
- Laboratory of Organogenesis and Organ Function; Bioscience and Biotechnology Center; Nagoya University; Furo Chikusa Nagoya Aichi 464-8601 Japan
- Division of Biological Science; Graduate School of Science; Nagoya University; Furo Chikusa Nagoya Aichi 464-8602 Japan
| | - Hisashi Hashimoto
- Laboratory of Organogenesis and Organ Function; Bioscience and Biotechnology Center; Nagoya University; Furo Chikusa Nagoya Aichi 464-8601 Japan
- Division of Biological Science; Graduate School of Science; Nagoya University; Furo Chikusa Nagoya Aichi 464-8602 Japan
| | - Shigenobu Yonemura
- Department of Cell Biology; Graduate School of Medical Science; Tokushima University; 3-18-15 Kuramoto Tokushima Tokushima 770-8503 Japan
| | - Atsuo Kawahara
- Laboratory for Developmental Biology; Center for Medical Education and Sciences; Graduate School of Medical Science; University of Yamanashi; 1110 Shimokato, Chuo; Yamanashi 409-3898 Japan
| | - Yutaka Hirata
- Department of Computer Science; Chubu University; 1200 Matsumoto Kasugai Aichi 485-8501 Japan
| | - Masayuki Yoshida
- Graduate School of Biosphere Sciences; Hiroshima University; 1-4-4 Kagamiyama Higashihiroshima Hiroshima 739-8528 Japan
| | - Masahiko Hibi
- Laboratory of Organogenesis and Organ Function; Bioscience and Biotechnology Center; Nagoya University; Furo Chikusa Nagoya Aichi 464-8601 Japan
- Division of Biological Science; Graduate School of Science; Nagoya University; Furo Chikusa Nagoya Aichi 464-8602 Japan
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35
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Tanimoto Y, Yamazoe-Umemoto A, Fujita K, Kawazoe Y, Miyanishi Y, Yamazaki SJ, Fei X, Busch KE, Gengyo-Ando K, Nakai J, Iino Y, Iwasaki Y, Hashimoto K, Kimura KD. Calcium dynamics regulating the timing of decision-making in C. elegans. eLife 2017; 6:e21629. [PMID: 28532547 PMCID: PMC5441874 DOI: 10.7554/elife.21629] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2016] [Accepted: 04/23/2017] [Indexed: 12/28/2022] Open
Abstract
Brains regulate behavioral responses with distinct timings. Here we investigate the cellular and molecular mechanisms underlying the timing of decision-making during olfactory navigation in Caenorhabditis elegans. We find that, based on subtle changes in odor concentrations, the animals appear to choose the appropriate migratory direction from multiple trials as a form of behavioral decision-making. Through optophysiological, mathematical and genetic analyses of neural activity under virtual odor gradients, we further find that odor concentration information is temporally integrated for a decision by a gradual increase in intracellular calcium concentration ([Ca2+]i), which occurs via L-type voltage-gated calcium channels in a pair of olfactory neurons. In contrast, for a reflex-like behavioral response, [Ca2+]i rapidly increases via multiple types of calcium channels in a pair of nociceptive neurons. Thus, the timing of neuronal responses is determined by cell type-dependent involvement of calcium channels, which may serve as a cellular basis for decision-making.
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Affiliation(s)
- Yuki Tanimoto
- Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Japan
| | - Akiko Yamazoe-Umemoto
- Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Japan
| | - Kosuke Fujita
- Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Japan
| | - Yuya Kawazoe
- Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Japan
| | - Yosuke Miyanishi
- Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Japan
| | - Shuhei J Yamazaki
- Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Japan
| | - Xianfeng Fei
- Faculty of Science and Technology, Tohoku Bunka Gakuen University, Sendai, Japan
| | - Karl Emanuel Busch
- Centre for Integrative Physiology, The University of Edinburgh, Edinburgh, United Kingdom
| | - Keiko Gengyo-Ando
- Graduate Shool of Science and Engineering, Brain and Body System Science Institute, Saitama University, Saitama, Japan
| | - Junichi Nakai
- Graduate Shool of Science and Engineering, Brain and Body System Science Institute, Saitama University, Saitama, Japan
| | - Yuichi Iino
- Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan
| | - Yuishi Iwasaki
- Department of Intelligent Systems Engineering, Ibaraki University, Hitachi, Japan
| | - Koichi Hashimoto
- Graduate School of Information Sciences, Tohoku University, Sendai, Japan
| | - Koutarou D Kimura
- Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Japan
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36
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Kim SS, Rouault H, Druckmann S, Jayaraman V. Ring attractor dynamics in the Drosophila central brain. Science 2017; 356:849-853. [PMID: 28473639 DOI: 10.1126/science.aal4835] [Citation(s) in RCA: 176] [Impact Index Per Article: 25.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2016] [Accepted: 04/20/2017] [Indexed: 12/20/2022]
Abstract
Ring attractors are a class of recurrent networks hypothesized to underlie the representation of heading direction. Such network structures, schematized as a ring of neurons whose connectivity depends on their heading preferences, can sustain a bump-like activity pattern whose location can be updated by continuous shifts along either turn direction. We recently reported that a population of fly neurons represents the animal's heading via bump-like activity dynamics. We combined two-photon calcium imaging in head-fixed flying flies with optogenetics to overwrite the existing population representation with an artificial one, which was then maintained by the circuit with naturalistic dynamics. A network with local excitation and global inhibition enforces this unique and persistent heading representation. Ring attractor networks have long been invoked in theoretical work; our study provides physiological evidence of their existence and functional architecture.
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Affiliation(s)
- Sung Soo Kim
- Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA 20147, USA
| | - Hervé Rouault
- Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA 20147, USA
| | - Shaul Druckmann
- Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA 20147, USA.
| | - Vivek Jayaraman
- Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA 20147, USA.
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37
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Abstract
How Drosophila larvae select one behavior or a sequence of behaviors, and then persist in the final one, has been addressed by a powerful combination of electron-microscopy reconstruction of neuronal connections, genetic manipulations, electrophysiology, and neuronal modeling. Surprisingly, reciprocal inhibitory synaptic connections are major players in choosing, sequencing and maintaining behaviors.
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Affiliation(s)
- William B Kristan
- Neurobiology Section, Department of Biological Sciences, University of California at San Diego, La Jolla, CA 92093-0357, USA.
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38
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Barrett DG, Denève S, Machens CK. Optimal compensation for neuron loss. eLife 2016; 5. [PMID: 27935480 PMCID: PMC5283835 DOI: 10.7554/elife.12454] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Accepted: 12/08/2016] [Indexed: 11/13/2022] Open
Abstract
The brain has an impressive ability to withstand neural damage. Diseases that kill neurons can go unnoticed for years, and incomplete brain lesions or silencing of neurons often fail to produce any behavioral effect. How does the brain compensate for such damage, and what are the limits of this compensation? We propose that neural circuits instantly compensate for neuron loss, thereby preserving their function as much as possible. We show that this compensation can explain changes in tuning curves induced by neuron silencing across a variety of systems, including the primary visual cortex. We find that compensatory mechanisms can be implemented through the dynamics of networks with a tight balance of excitation and inhibition, without requiring synaptic plasticity. The limits of this compensatory mechanism are reached when excitation and inhibition become unbalanced, thereby demarcating a recovery boundary, where signal representation fails and where diseases may become symptomatic.
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Affiliation(s)
- David Gt Barrett
- Laboratoire de Neurosciences Cognitives, École Normale Supérieure, Paris, France.,Champalimaud Neuroscience Programme, Champalimaud Centre for the Unknown, Lisbon, Portugal
| | - Sophie Denève
- Laboratoire de Neurosciences Cognitives, École Normale Supérieure, Paris, France
| | - Christian K Machens
- Champalimaud Neuroscience Programme, Champalimaud Centre for the Unknown, Lisbon, Portugal
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39
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Computational principles of memory. Nat Neurosci 2016; 19:394-403. [PMID: 26906506 DOI: 10.1038/nn.4237] [Citation(s) in RCA: 105] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Accepted: 01/06/2016] [Indexed: 02/06/2023]
Abstract
The ability to store and later use information is essential for a variety of adaptive behaviors, including integration, learning, generalization, prediction and inference. In this Review, we survey theoretical principles that can allow the brain to construct persistent states for memory. We identify requirements that a memory system must satisfy and analyze existing models and hypothesized biological substrates in light of these requirements. We also highlight open questions, theoretical puzzles and problems shared with computer science and information theory.
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40
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Shaikh AG, Zee DS, Crawford JD, Jinnah HA. Cervical dystonia: a neural integrator disorder. Brain 2016; 139:2590-2599. [PMID: 27324878 DOI: 10.1093/brain/aww141] [Citation(s) in RCA: 62] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2016] [Accepted: 05/01/2016] [Indexed: 02/03/2023] Open
Abstract
Ocular motor neural integrators ensure that eyes are held steady in straight-ahead and eccentric positions of gaze. Abnormal function of the ocular motor neural integrator leads to centripetal drifts of the eyes with consequent gaze-evoked nystagmus. In 2002 a neural integrator, analogous to that in the ocular motor system, was proposed for the control of head movements. Recently, a counterpart of gaze-evoked eye nystagmus was identified for head movements; in which the head could not be held steady in eccentric positions on the trunk. These findings lead to a novel pathophysiological explanation in cervical dystonia, which proposed that the abnormalities of head movements stem from a malfunctioning head neural integrator, either intrinsically or as a result of impaired cerebellar, basal ganglia, or peripheral feedback. Here we briefly recapitulate the history of the neural integrator for eye movements, then further develop the idea of a neural integrator for head movements, and finally discuss its putative role in cervical dystonia. We hypothesize that changing the activity in an impaired head neural integrator, by modulating feedback, could treat dystonia.
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Affiliation(s)
- Aasef G Shaikh
- 1 Department of Neurology, Case Western Reserve University, Cleveland, OH, USA 2 Daroff-DelOsso Ocular Motility Laboratory, Neurology Service, Louis Stoke VA Medical Center, Cleveland, OH, USA
| | - David S Zee
- 3 Department of Neurology, The Johns Hopkins University, Baltimore, MD, USA
| | - J Douglas Crawford
- 4 Centre for Vision Research and Departments of Psychology, Biology, and Kinesiology and Health Sciences, York University, Toronto, ON, Canada
| | - Hyder A Jinnah
- 5 Department of Neurology, Emory University, Atlanta, GA, USA
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41
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42
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Li N, Daie K, Svoboda K, Druckmann S. Robust neuronal dynamics in premotor cortex during motor planning. Nature 2016; 532:459-64. [PMID: 27074502 PMCID: PMC5081260 DOI: 10.1038/nature17643] [Citation(s) in RCA: 266] [Impact Index Per Article: 33.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2015] [Accepted: 03/08/2016] [Indexed: 02/07/2023]
Abstract
Neural activity maintains representations that bridge past and future events, often over many seconds. Network models can produce persistent and ramping activity, but the positive feedback that is critical for these slow dynamics can cause sensitivity to perturbations. Here we use electrophysiology and optogenetic perturbations in the mouse premotor cortex to probe the robustness of persistent neural representations during motor planning. We show that preparatory activity is remarkably robust to large-scale unilateral silencing: detailed neural dynamics that drive specific future movements were quickly and selectively restored by the network. Selectivity did not recover after bilateral silencing of the premotor cortex. Perturbations to one hemisphere are thus corrected by information from the other hemisphere. Corpus callosum bisections demonstrated that premotor cortex hemispheres can maintain preparatory activity independently. Redundancy across selectively coupled modules, as we observed in the premotor cortex, is a hallmark of robust control systems. Network models incorporating these principles show robustness that is consistent with data.
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Affiliation(s)
- Nuo Li
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147, USA
| | - Kayvon Daie
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147, USA
| | - Karel Svoboda
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147, USA
| | - Shaul Druckmann
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia 20147, USA
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43
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Modelling Feedback Excitation, Pacemaker Properties and Sensory Switching of Electrically Coupled Brainstem Neurons Controlling Rhythmic Activity. PLoS Comput Biol 2016; 12:e1004702. [PMID: 26824331 PMCID: PMC4732667 DOI: 10.1371/journal.pcbi.1004702] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2015] [Accepted: 12/11/2015] [Indexed: 11/19/2022] Open
Abstract
What cellular and network properties allow reliable neuronal rhythm generation or firing that can be started and stopped by brief synaptic inputs? We investigate rhythmic activity in an electrically-coupled population of brainstem neurons driving swimming locomotion in young frog tadpoles, and how activity is switched on and off by brief sensory stimulation. We build a computational model of 30 electrically-coupled conditional pacemaker neurons on one side of the tadpole hindbrain and spinal cord. Based on experimental estimates for neuron properties, population sizes, synapse strengths and connections, we show that: long-lasting, mutual, glutamatergic excitation between the neurons allows the network to sustain rhythmic pacemaker firing at swimming frequencies following brief synaptic excitation; activity persists but rhythm breaks down without electrical coupling; NMDA voltage-dependency doubles the range of synaptic feedback strengths generating sustained rhythm. The network can be switched on and off at short latency by brief synaptic excitation and inhibition. We demonstrate that a population of generic Hodgkin-Huxley type neurons coupled by glutamatergic excitatory feedback can generate sustained asynchronous firing switched on and off synaptically. We conclude that networks of neurons with NMDAR mediated feedback excitation can generate self-sustained activity following brief synaptic excitation. The frequency of activity is limited by the kinetics of the neuron membrane channels and can be stopped by brief inhibitory input. Network activity can be rhythmic at lower frequencies if the neurons are electrically coupled. Our key finding is that excitatory synaptic feedback within a population of neurons can produce switchable, stable, sustained firing without synaptic inhibition.
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44
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Ulrich F, Grove C, Torres-Vázquez J, Baker R. Development of functional hindbrain oculomotor circuitry independent of both vascularization and neuronal activity in larval zebrafish. CURRENT NEUROBIOLOGY 2016; 7:62-73. [PMID: 30135618 PMCID: PMC6101672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We investigated the contribution of blood vessel formation and neuronal excitability to the development of functional neural circuitry in larval zebrafish by analyzing oculomotor performance in response to visual and vestibular stimuli. To address the dependence of neuronal function on the presence of blood vessels, we compared wild type embryos to reck and cloche mutants that lacked intracerebral blood vessels. To test how neuronal excitability impacts neuronal development and intracerebral vascularization, we blocked neural activity using Tetraodotoxin (TTX) and Tricaine. In reck mutants, we found both slow phase horizontal tracking and fast phase resets with only a slightly reduced amplitude and bandwidth. Spontaneous saccades, eye position holding and vestibular gravitoinertial induced eye rotation were also present. All of these behaviors except for visual tracking were observed in cloche mutants that lacked any head vasculature. Thus, numerous oculomotor neuronal circuits spanning the forebrain, midbrain and hindbrain compartments, ending in motor innervations of the eye muscles, were correctly formed and generated appropriate oculomotor behaviors without blood vessels. However, our observations indicate that beginning at approximately six days, circulation was required for sustained behavioral performance. We further found that blocking neuronal excitability with either TTX or Tricaine up to 4-5 days post fertilization did not noticeably interfere with intracerebral blood vessel formation in wild type larvae. After removal of drug treatments, the oculomotor behaviors returned within hours. Thus, development of neuronal circuits that drive oculomotor performance does not require neuronal spiking or activity. Together these findings demonstrate that neither vascularization nor neuronal excitability are essential for the formation of numerous oculomotor nuclei with intricately designed connectivity and signal processing. We conclude that a genetic blueprint specifies early larval structural and physiological features, and this developmental strategy may be viewed as a unique adaptation required for early survival.
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Affiliation(s)
- Florian Ulrich
- Department of Developmental Genetics, Skirball Institute of Molecular Medicine, 540 1st Avenue, New York City, New York 10016, USA
| | - Charlotte Grove
- Department of Neuroscience and Physiology, New York University Medical Center, 550 1st Avenue, New York City, New York 10016, USA
| | - Jesús Torres-Vázquez
- Department of Developmental Genetics, Skirball Institute of Molecular Medicine, 540 1st Avenue, New York City, New York 10016, USA
| | - Robert Baker
- Department of Neuroscience and Physiology, New York University Medical Center, 550 1st Avenue, New York City, New York 10016, USA
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45
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Scott BB, Constantinople CM, Erlich JC, Tank DW, Brody CD. Sources of noise during accumulation of evidence in unrestrained and voluntarily head-restrained rats. eLife 2015; 4:e11308. [PMID: 26673896 PMCID: PMC4749559 DOI: 10.7554/elife.11308] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2015] [Accepted: 12/15/2015] [Indexed: 11/13/2022] Open
Abstract
Decision-making behavior is often characterized by substantial variability, but its source remains unclear. We developed a visual accumulation of evidence task designed to quantify sources of noise and to be performed during voluntary head restraint, enabling cellular resolution imaging in future studies. Rats accumulated discrete numbers of flashes presented to the left and right visual hemifields and indicated the side that had the greater number of flashes. Using a signal-detection theory-based model, we found that the standard deviation in their internal estimate of flash number scaled linearly with the number of flashes. This indicates a major source of noise that, surprisingly, is not consistent with the widely used 'drift-diffusion modeling' (DDM) approach but is instead closely related to proposed models of numerical cognition and counting. We speculate that this form of noise could be important in accumulation of evidence tasks generally. DOI:http://dx.doi.org/10.7554/eLife.11308.001 Perceptual decision-making, i.e. making choices based on observed evidence, is rarely perfect. Humans and other animals tend to respond correctly on some trials and incorrectly on others. For over a century, this variability has been used to study the basis of decision-making. Most behavioral models assume that random fluctuations or 'noise' in the decision-making process is the primary source of variability and errors. However, the nature of this noise is unclear and the subject of intense scrutiny. To investigate the sources of the behavioral variability during decision-making, Scott, Constantinople et al. trained rats to perform a visual 'accumulation of evidence' task. The animals counted flashes of light that appeared on either their left or their right. Up to 15 flashes occurred on each side, in a random order, and the rats then received a reward if they selected the side that the greatest number of flashes had occurred on. The rats chose correctly on many occasions but not on every single one. Using a computer-controlled rat training facility or 'rat academy', Scott, Constantinople et al. collected hundreds of thousands of behavioral trials from over a dozen rats. This large dataset provided the statistical power necessary to test the assumptions of leading models of behavioral variability during decision-making, and revealed that noise grew more rapidly with the number of flashes than previously predicted. This finding explained patterns of behavior that previous models struggled with, most notably the fact that individuals make errors even on the easiest trials. The analysis also revealed that animals maintain two separate running totals – one of stimuli on the left and another of stimuli on the right – rather than a single tally of the difference between the two. Scott, Constantinople et al. further demonstrated that rats could be trained to perform this task using a new system that enables functional brain imaging. The next step is to repeat these experiments while simultaneously recording brain activity to study the neural circuits that underlie decision-making and its variability. DOI:http://dx.doi.org/10.7554/eLife.11308.002
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Affiliation(s)
- Benjamin B Scott
- Princeton Neuroscience Institute, Princeton University, Princeton, United States.,Department of Molecular Biology, Princeton University, Princeton, United States
| | - Christine M Constantinople
- Princeton Neuroscience Institute, Princeton University, Princeton, United States.,Department of Molecular Biology, Princeton University, Princeton, United States
| | - Jeffrey C Erlich
- NYU-ECNU Institute of Brain and Cognitive Science, New York University Shanghai, Shanghai, China
| | - David W Tank
- Princeton Neuroscience Institute, Princeton University, Princeton, United States.,Department of Molecular Biology, Princeton University, Princeton, United States.,Bezos Center for Neural Circuit Dynamics, Princeton University, Princeton, United States
| | - Carlos D Brody
- Princeton Neuroscience Institute, Princeton University, Princeton, United States.,Department of Molecular Biology, Princeton University, Princeton, United States.,Howard Hughes Medical Institute, Princeton University, Princeton, United States
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Inagaki K, Hirata Y. Different roles for ipsilateral positive feedback and commissural inhibitory networks in oculomotor velocity to position neural integration. BMC Neurosci 2015. [PMCID: PMC4697659 DOI: 10.1186/1471-2202-16-s1-p100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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47
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Termsarasab P, Thammongkolchai T, Rucker JC, Frucht SJ. The diagnostic value of saccades in movement disorder patients: a practical guide and review. JOURNAL OF CLINICAL MOVEMENT DISORDERS 2015; 2:14. [PMID: 26788350 PMCID: PMC4710978 DOI: 10.1186/s40734-015-0025-4] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/13/2015] [Accepted: 09/01/2015] [Indexed: 12/11/2022]
Abstract
Saccades are rapid eye movements designed to shift the fovea to objects of visual interest. Abnormalities of saccades offer important clues in the diagnosis of a number of movement disorders. In this review, we explore the anatomy of horizontal and vertical saccades, discuss practical aspects of their examination, and review how saccadic abnormalities in hyperkinetic and hypokinetic movement disorders aid in diagnosis, with video demonstration of classic examples. Documentation of the ease of saccade initiation, range of motion and conjugacy of saccades, speed and accuracy of saccades, dynamic saccadic trajectory, and the presence or absence of saccadic intrusions and oscillations are important components of this exam. We also provide a practical algorithm to demonstrate the value of saccades in the differential diagnosis of the movement disorders patient.
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Affiliation(s)
- Pichet Termsarasab
- Movement Disorder Division, Department of Neurology, Icahn School of Medicine at Mount Sinai, 5 East 98th St, New York, 10029 USA
| | | | - Janet C Rucker
- Division of Neuro-ophthalmology, Department of Neurology, New York University School of Medicine, New York, USA
| | - Steven J Frucht
- Movement Disorder Division, Department of Neurology, Icahn School of Medicine at Mount Sinai, 5 East 98th St, New York, 10029 USA
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48
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Abstract
The accumulation and storage of information over time, temporal integration, is key to numerous behaviors. Many oculomotor tasks depend on integration of eye-velocity signals to eye-position commands, a transformation achieved by a hindbrain cell group termed the velocity-to-position neural integrator (VPNI). Although the VPNI's coding properties have been well characterized, its mechanism of function remains poorly understood because few links exist between neuronal activity, structure, and genotypic identity. To fill this gap, we used calcium imaging and single-cell electroporation during oculomotor behaviors to map VPNI neural activity in zebrafish onto a hindbrain scaffold consisting of alternating excitatory and inhibitory parasagittal stripes. Three distinct classes of VPNI cells were identified. One glutamatergic class was medially located along a stripe associated with the alx transcription factor; these cells had ipsilateral projections terminating near abducens motoneurons and collateralized extensively within the ipsilateral VPNI in a manner consistent with integration through recurrent excitation. A second glutamatergic class was more laterally located along a stripe associated with transcription factor dbx1b; these glutamatergic cells had contralateral projections collateralizing near abducens motoneurons, consistent with a role in disconjugate eye movements. A third class, immunohistochemically suggested to be GABAergic, was located primarily in the dbx1b stripe and also had contralateral projections terminating near abducens motoneurons; these cells collateralized extensively in the dendritic field of contralateral VPNI neurons, consistent with a role in coordinating activity between functionally opposing populations. This mapping between VPNI activity, structure, and genotype may provide a blueprint for understanding the mechanisms governing temporal integration.
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49
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Neural dynamics for landmark orientation and angular path integration. Nature 2015; 521:186-91. [PMID: 25971509 PMCID: PMC4704792 DOI: 10.1038/nature14446] [Citation(s) in RCA: 388] [Impact Index Per Article: 43.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2014] [Accepted: 04/09/2015] [Indexed: 12/11/2022]
Abstract
Many animals navigate using a combination of visual landmarks and path integration. In mammalian brains, head direction cells integrate these two streams of information by representing an animal's heading relative to landmarks, yet maintaining their directional tuning in darkness based on self-motion cues. Here we use two-photon calcium imaging in head-fixed flies walking on a ball in a virtual reality arena to demonstrate that landmark-based orientation and angular path integration are combined in the population responses of neurons whose dendrites tile the ellipsoid body — a toroidal structure in the center of the fly brain. The population encodes the fly's azimuth relative to its environment, tracking visual landmarks when available and relying on self-motion cues in darkness. When both visual and self-motion cues are absent, a representation of the animal's orientation is maintained in this network through persistent activity — a potential substrate for short-term memory. Several features of the population dynamics of these neurons and their circular anatomical arrangement are suggestive of ring attractors — network structures proposed to support the function of navigational brain circuits.
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50
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Abstract
Encoding horizontal eye position in the oculomotor system occurs through temporal integration of eye velocity inputs to produce tonic outputs. The nucleus prepositus is commonly believed to be the "neural integrator" that accomplishes this function through the activity of its ensemble of predominantly burst-tonic neurons. Single-unit characterizations and labeling studies of these neurons have suggested that their collective output is achieved through local feedback loops produced by direct connections between them. If this is the case, then the ensemble of burst-tonic neurons should exhibit correlated activity. To obtain electrophysiological evidence of local interactions between neurons, we simultaneously recorded pairs (n = 29) of burst-tonic neurons in the nucleus prepositus of rhesus macaque monkeys using eight-channel linear microelectrode arrays. We computed the magnitude of synchrony between their spike trains as a function of eye position during ocular fixations and as a function of distance between neurons. Importantly, we found that neurons exhibit unexpected levels of positive synchrony, which is maximal during contralateral fixations and weakest when neurons are located far apart from one another (>300 μm). Together, our results support a role for shared inputs to ipsilateral pairs of burst-tonic neurons in the encoding of eye position in the primate nucleus prepositus.
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