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Preethi KA, Selvakumar SC, Sekar D. In Silico Identification of Human miR-26a-1 from Hypertension Genome
Sequence. CURRENT SIGNAL TRANSDUCTION THERAPY 2023; 18. [DOI: 10.2174/1574362417666220827114844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Revised: 03/30/2022] [Accepted: 06/02/2022] [Indexed: 02/17/2025]
Abstract
Background:
Hypertension is a global public health issue that is becoming more prevalent.
It is a non-communicable disease and a great public health problem affecting almost half of
the world’s adult population. Being multifactorial, hypertension is a key risk factor for stroke, coronary
artery disease, heart failure, and chronic renal failure. However, the cellular and molecular
mechanisms that regulate it remain mostly unknown. According to numerous studies, microRNAs
(miRNAs) have been implicated in a range of cellular processes in the development of illnesses.
The current study aims to identify miRNAs in hypertension from genome sequences found in public
genomic databases.
Materials and Methods:
In this study, we have used bioinformatic approaches to identify miR-26a-
1 for hypertension using the NCBI database, miRBase and target scan. Finally, the RNA fold was
used to create the secondary structure of miR-26a-1.
Results and Discussion:
Careful evaluation of secondary structure result showed that hsa-miR-
26a-1 has a minimum free energy of - 37.30 kcal. The correlation between miR-26a-1 and hypertension
genome sequence was identified.
Conclusion:
These computational approaches have concluded that miR-26a-1 can be used as a diagnosis,
prognosis and effective therapeutic target for treating hypertension. Thus, further research
could enlighten the role of miR-26a-1 in hypertension.
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Affiliation(s)
- K. Auxzilia Preethi
- Centre for Cellular and Molecular Research, Saveetha Dental College and Hospitals, Saveetha Institute of Medical and
Technical Sciences (SIMATS), Saveetha University, Chennai-77, India
| | - Sushmaa Chandralekha Selvakumar
- Centre for Cellular and Molecular Research, Saveetha Dental College and Hospitals, Saveetha Institute of Medical and
Technical Sciences (SIMATS), Saveetha University, Chennai-77, India
| | - Durairaj Sekar
- Centre for Cellular and Molecular Research, Saveetha Dental College and Hospitals, Saveetha Institute of Medical and
Technical Sciences (SIMATS), Saveetha University, Chennai-77, India
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Sekar D, Nallaswamy D, Lakshmanan G. Decoding the functional role of long noncoding RNAs (lncRNAs) in hypertension progression. Hypertens Res 2020; 43:724-725. [PMID: 32235913 DOI: 10.1038/s41440-020-0430-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2020] [Revised: 02/12/2020] [Accepted: 02/13/2020] [Indexed: 11/08/2022]
Affiliation(s)
- Durairaj Sekar
- Dental Research Cell (DRC-BRULAC), Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Science (SIMATS), Saveetha University, Chennai, 600077, India.
| | - Deepak Nallaswamy
- Department of Prosthodontics, Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Science (SIMATS), Saveetha University, Chennai, 600077, India
| | - Ganesh Lakshmanan
- Department of Anatomy, Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Science (SIMATS), Saveetha University, Chennai, 600077, India
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Bai L, Li J, Panagal M, M B, Sekar D. Methylation dependent microRNA 1285-5p and sterol carrier proteins 2 in type 2 diabetes mellitus. ARTIFICIAL CELLS, NANOMEDICINE, AND BIOTECHNOLOGY 2019; 47:3417-3422. [PMID: 31407919 DOI: 10.1080/21691401.2019.1652625] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Revised: 07/26/2019] [Accepted: 08/01/2019] [Indexed: 02/07/2023]
Abstract
Diabetes mellitus (DM) is one of the severe metabolic diseases found in all types of people's lives in lower, middle and high income countries. It is suggested that the prevalence of diabetes is increasing in many countries and most of the cases are type 2 DM, clinical treatments are changing now to manage type 2 DM, however, up-to-date, there is no diagnostic, prognostic, and therapeutic target for type 2 DM. MicroRNAs (miRNAs) is one of a non-protein coding RNAs that have been regulating a wide range cellular processes and induce the development of many diseases. Most of the researchers concluded that miRNAs involvement is an important process in a broad range of signaling pathways such as cell proliferation, stem cell maintenance, migration, apoptosis and gene or protein expressions. Expressed sequence tags (ESTs) are the best source of coding and non-coding sequences for the identification of miRNAs. Although DNA methylation is an important mechanism for miRNAs up-regulation, this has not been highly explored in type 2 DM. The present study is useful to elucidate the molecular mechanism of MiR-1285-5p in type 2 DM and its role in disease progression and we discovered miR-1285 as a novel prognostic, diagnostic and therapeutic target for type 2 DM.
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Affiliation(s)
- Lian Bai
- a Department of General Medicine, Jinan Central Hospital Affiliated to Shandong University , Jinan , Shandong Province , P. R. China
| | - Junwu Li
- b Department of Clinical Laboratory, Jinan Jigang Hospital , Jinan , Shandong Province , P. R. China
| | - Mani Panagal
- c Department of Biotechnology, Annai College of Arts and Science , Kumbakonam , Tamil Nadu , India
| | - Biruntha M
- d Department of Animal Health and Management, Alagappa University , Karaikudi , Tamil Nadu , India
| | - Durairaj Sekar
- e Dental Research Cell (DRC), Saveetha Dental College, Saveetha Institute of Medical and Technical Science (SIMATS), Saveetha University , Chennai , India
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Sekar D. Circular RNA: a new biomarker for different types of hypertension. Hypertens Res 2019; 42:1824-1825. [PMID: 31316171 DOI: 10.1038/s41440-019-0302-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2019] [Revised: 07/01/2019] [Accepted: 07/02/2019] [Indexed: 02/07/2023]
Affiliation(s)
- Durairaj Sekar
- Dental Research Cell (DRC-BRULAC), Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Science (SIMATS), Saveetha University, Chennai, 600077, India.
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Sekar D, Lakshmanan G, Mani P, Biruntha M. Methylation-dependent circulating microRNA 510 in preeclampsia patients. Hypertens Res 2019; 42:1647-1648. [PMID: 31114031 DOI: 10.1038/s41440-019-0269-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2019] [Revised: 04/19/2019] [Accepted: 04/22/2019] [Indexed: 11/09/2022]
Affiliation(s)
- Durairaj Sekar
- Dental Research Cell (DRC-BRULAC), Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Science (SIMATS), Saveetha University, Chennai, 600077, India.
| | - Ganesh Lakshmanan
- Department of Anatomy, Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Science (SIMATS), Saveetha University, Chennai, 600077, India
| | - Panagal Mani
- Department of Biotechnology, Annai College of Arts and Science, Kumbakonam, Tamil Nadu, 612001, India
| | - M Biruntha
- Department of Animal Health and Management, Alagappa University, Karaikudi, Tamil Nadu, 630003, India
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Sekar D, Mani P, Biruntha M, Sivagurunathan P, Karthigeyan M. Dissecting the functional role of microRNA 21 in osteosarcoma. Cancer Gene Ther 2019; 26:179-182. [PMID: 30905966 DOI: 10.1038/s41417-019-0092-z] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2019] [Revised: 03/05/2019] [Accepted: 03/12/2019] [Indexed: 12/30/2022]
Abstract
Osteosarcoma (OS) is considered to be a malignant bone tumour that mainly affects the long bones, but it is also involved in other bones of the body. Currently, surgery and chemotherapy have achieved some response to patients with OS, but they are not increasing the survival rate as well as treatment options. Researchers made lot of drug options for OS, but yet, no treatment is existing in sight for the disease and needs a new insight into the molecular and signaling pathways for the disease. Now, it is necessary to develop a novel and alternative strategy for the prognosis, diagnosis and treatment options for OS. MicroRNAs (miRNAs) are a small non-coding RNA, and their size ranges from 18 to 22 nt in length. In the nucleus, miRNAs originate and transcribe into primary transcripts and later cleaved to produce stem loop-structured precursor nucleotides. microRNA 21 (miR-21) is considered to be a trivial marker for many diseases and has been upregulated in many cancers. Moreover, it plays a main role in proliferation, migration, invasion and apoptosis. miR-21 and its associated pathways are very important and play a critical role in the pathogenesis of OS and are considered to be a biomarker and a therapeutic target for OS. To our knowledge, there is no paper that demonstrates the responsibility and the role of miR-21 in OS and the number of studies related to miR-21 in OS is spare. Therefore, the main aim of this paper is to give an outline of the recent clinical investigation and importance of miR-21 in OS. It has been suggested that the up- and downregulation of miRNAs plays a crucial role in the pathogenesis and progression of OS. Normally, miR-21 was found to be upregulated in OS; however, we summarize the clinical relevance and the recent research findings associated with miR-21 in OS.
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Affiliation(s)
- Durairaj Sekar
- Dental Research Cell (DRC-BRULAC), Saveetha Dental College and Hospital, Saveetha Institute of Medical and Technical Science (SIMATS), Saveetha University, Chennai, 600077, India.
| | - Panagal Mani
- Department of Biotechnology, Annai College of Arts and Science, Kumbakonam, Tamil Nadu, 612001, India
| | - M Biruntha
- Department of Animal Health and Management, Alagappa University, Karaikudi, Tamil Nadu, 630003, India
| | - P Sivagurunathan
- Department of Microbiology, Faculty of Science, Annamalai University, Chidambaram, Tamil Nadu, 608002, India
| | - M Karthigeyan
- Department of Zoology, Arumugam Pillai Seethai Ammal College, Tiruppattur, Tamil Nadu, India
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