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Sun R, Römhild S, Nakamura Y, Reichelt M, Luck K, Mai DT, Rothe B, Gershenzon J, Vassão DG. Multiple glutathione-S-transferases detoxify diverse glucosinolate-based defenses of Brassicales plants in a generalist lepidopteran herbivore (Spodoptera littoralis). Commun Biol 2025; 8:931. [PMID: 40527977 DOI: 10.1038/s42003-025-08346-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2025] [Accepted: 06/04/2025] [Indexed: 06/20/2025] Open
Abstract
Brassicales plants defend themselves with glucosinolates that, upon herbivory, are hydrolyzed into toxic isothiocyanates (ITCs) and other derivatives. The side chain diversity of glucosinolates results in a range of structurally distinct products, but how this chemical variation affects herbivores and their detoxification responses remains incompletely understood. Here, we show the effects of ITC hydrolysis products with various side chains on Spodoptera littoralis larvae and their detoxification system. ITCs inhibit larval growth to varying degrees, depending on the chemical nature of their side chain. The larvae metabolize ITCs by conjugating them to glutathione in the mercapturic acid pathway and to lysine forming an amine conjugate. Over half of the 34 S. littoralis glutathione-S-transferases (GSTs), tested as His-tagged derivatives, actively conjugate ITCs, with most catalyzing reactions with multiple substrates. Larval performance on various ITC-containing diets correlates positively with GST activity, highlighting this detoxification system's role in supporting growth on glucosinolate-containing plants. The propensity of multiple GSTs to react with an individual ITC and the wide expression of GST-encoding genes across larval organs likely promote the ability of this generalist herbivore to thrive on glucosinolate-defended Brassicales plants. These findings provide insight into herbivore adaptation and may inform future research on plant-insect interactions.
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Affiliation(s)
- Ruo Sun
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany.
| | - Samantha Römhild
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Yoko Nakamura
- Department of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Michael Reichelt
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Katrin Luck
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany
- Department of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Duc Tam Mai
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Beate Rothe
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Jonathan Gershenzon
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany.
| | - Daniel Giddings Vassão
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany.
- Max Planck Institute of Geoanthropology, Jena, Germany.
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2
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Wang J, Wang M, Ravi A, Zaraei SO, Alkubaisi BO, Wen Y, Zeng L, El-Gamal MI, Xu H. Inhibition of Glucosinolate Sulfatases to Combat Plutella xylostella: Development of Novel Phenylcarboxamide Derivatives for Plant-Integrated Pest Management. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2025; 73:12061-12071. [PMID: 40310993 DOI: 10.1021/acs.jafc.5c01873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2025]
Abstract
Glucosinolates in cruciferous plants are hydrolyzed by myrosinase to produce toxic isothiocyanates (ITCs). However, Plutella xylostella (P. xylostella), one of the top 10 global agricultural pests, utilizes glucosinolate sulfatases (GSSs) in its gut to convert glucosinolates into nontoxic desulfo-glucosinolates, thereby effectively avoiding the toxicity of ITCs. This study investigates the potential of inhibiting GSSs. Among 16 synthesized phenylcarboxamide derivatives, compound 1n exhibited strong inhibitory activity against GSS1 (59.72%) and GSS2 (88.47%), key enzymes involved in glucosinolate desulfation in P. xylostella, leading to toxic ITC accumulation and disrupted detoxification. This resulted in an approximately 30% reduction in larval weight, at a concentration of 100 mg/L, the mortality rate reached 96%. Importantly, in the absence of glucosinolates, these inhibitors showed no direct toxicity to the insect, indicating that their action relies on interaction with the plant's chemical defense system. These findings provide strong evidence supporting the development of GSSs inhibitions as more specific and selective insecticide, offering a promising alternative to conventional chemical pesticides.
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Affiliation(s)
- Jiali Wang
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou 510642, China
- Guangdong Provincial Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Norther Region, Shaoguan University, Shaoguan 512005, China
| | - Manwen Wang
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou 510642, China
| | - Anil Ravi
- Research Institute for Medical and Health Sciences, University of Sharjah, Sharjah 27272, United Arab Emirates
| | - Seyed-Omar Zaraei
- Research Institute for Medical and Health Sciences, University of Sharjah, Sharjah 27272, United Arab Emirates
| | - Bilal O Alkubaisi
- Research Institute for Medical and Health Sciences, University of Sharjah, Sharjah 27272, United Arab Emirates
| | - Yingjie Wen
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou 510642, China
- Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs; Guangdong Provincial Key Laboratory of Science and Technology Research on Fruit Tree, Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China
| | - Lingda Zeng
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou 510642, China
| | - Mohammed I El-Gamal
- Research Institute for Medical and Health Sciences, University of Sharjah, Sharjah 27272, United Arab Emirates
- Department of Medicinal Chemistry, College of Pharmacy, University of Sharjah, Sharjah 27272, United Arab Emirates
- Department of Medicinal Chemistry, Faculty of Pharmacy, Mansoura University, Mansoura 35516, Egypt
| | - Hanhong Xu
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou 510642, China
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Gebretsadik KG, Liu Z, Yang J, Liu H, Qin A, Zhou Y, Guo E, Song X, Gao P, Xie Y, Vincent N, Tran LSP, Sun X. Plant-aphid interactions: recent trends in plant resistance to aphids. STRESS BIOLOGY 2025; 5:28. [PMID: 40299207 PMCID: PMC12041410 DOI: 10.1007/s44154-025-00214-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2024] [Revised: 01/08/2025] [Accepted: 01/09/2025] [Indexed: 04/30/2025]
Abstract
Aphids are highly destructive agricultural pests characterized by complex life cycles and phenotypic variability, facilitating their adaptation to diverse climates and host plants. Their feeding behavior leads to plant deformation, wilting, stunted growth, disease transmission, and significant yield losses. Given the economic risks aphids pose, regular updates on their seasonal behaviors, adaptive mechanisms, and destructive activities are critical for improving management strategies to mitigate crop losses. This review comprehensively synthesizes recent studies on aphids as plant pests, the extrinsic factors influencing their life cycles, and the intricate interactions between aphids and their hosts. It also highlights recent advancements in biological control measures, including natural enemies, antibiosis, and antixenosis. Additionally, we explore plant defense mechanisms against aphids, focusing on the roles of cell wall components such as lignin, pectin and callose deposition and the genetic regulations underlying these defenses. Aphids, however, can evolve specialized strategies to overcome general plant defenses, prompting the development of targeted mechanisms in plants, such as the use of resistance (R) genes against specific aphid species. Additionally, plant pattern recognition receptors (PRRs) recognize compounds in aphid saliva, which triggers enhanced phloem sealing and more focused immune responses. This work enhances understanding of aphid-plant interaction and plant resistance and identifies key research gaps for future studies.
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Affiliation(s)
- Kifle Gebreegziabiher Gebretsadik
- State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, 85 Minglun Street 85 Minglun Street, Kaifeng, 475001, People's Republic of China
- Tigray Agricultural Research Institute (TARI), Mekelle, 5637, Ethiopia
| | - Zhixin Liu
- State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, 85 Minglun Street 85 Minglun Street, Kaifeng, 475001, People's Republic of China
| | - Jincheng Yang
- State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, 85 Minglun Street 85 Minglun Street, Kaifeng, 475001, People's Republic of China
| | - Hao Liu
- State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, 85 Minglun Street 85 Minglun Street, Kaifeng, 475001, People's Republic of China
| | - Aizhi Qin
- State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, 85 Minglun Street 85 Minglun Street, Kaifeng, 475001, People's Republic of China
| | - Yaping Zhou
- State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, 85 Minglun Street 85 Minglun Street, Kaifeng, 475001, People's Republic of China
| | - Enzhi Guo
- State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, 85 Minglun Street 85 Minglun Street, Kaifeng, 475001, People's Republic of China
| | - Xiao Song
- State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, 85 Minglun Street 85 Minglun Street, Kaifeng, 475001, People's Republic of China
| | - Peibo Gao
- State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, 85 Minglun Street 85 Minglun Street, Kaifeng, 475001, People's Republic of China
| | - Yajie Xie
- State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, 85 Minglun Street 85 Minglun Street, Kaifeng, 475001, People's Republic of China
| | - Ninkuu Vincent
- State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, 85 Minglun Street 85 Minglun Street, Kaifeng, 475001, People's Republic of China
| | - Lam-Son Phan Tran
- Department of Plant and Soil Science, Institute of Genomics for Crop Abiotic Stress Tolerance, Texas Tech University, Lubbock, TX, 79409, USA.
| | - Xuwu Sun
- State Key Laboratory of Cotton Biology, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, 85 Minglun Street 85 Minglun Street, Kaifeng, 475001, People's Republic of China.
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Kumar D, Roy S, Babu A, Pandey AK. Harnessing Fungal Bioagents Rich in Volatile Metabolites for Sustainable Crop Protection: A Critical Review. J Basic Microbiol 2025; 65:e70003. [PMID: 40007229 DOI: 10.1002/jobm.70003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2024] [Revised: 12/29/2024] [Accepted: 01/11/2025] [Indexed: 02/27/2025]
Abstract
Pests and diseases have a significant impact on crop health and yields, posing a serious threat to global agriculture. Effective management strategies, such as integrated pest management (IPM), including crop rotation, use of synthetic pesticides, biological control, and resistant/tolerant crop varieties, are essential to mitigate these risks and ensure sustainable agricultural practices. Fungal bioagents play an important role in managing phytopathogens and insect pests by acting as biological agents. They promote healthy plant growth by enhancing the uptake of nutrients and combating systemic resistance in plants. Furthermore, fungal bioagents are environmentally friendly, reducing application of fungicides and insecticides and minimizing their negative impact on the crops and environment. Their use in IPM promotes sustainable agriculture and ensures high-quality crops while maintaining soil health and microbial biodiversity. These fungal bioagents are rich sources of volatile organic compounds (VOCs), which play an important role in biological communication during interaction with insect pests and phytopathogens. In pest management, VOC production by beneficial fungi is accountable for their efficacy against pests and pathogens. Thus, this review discusses the important fungal bioagents producing VOCs, extraction methods of VOC, and the use of VOC-producing fungi in pest and disease management, knowledge gaps, and future research areas.
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Affiliation(s)
- Dheeraj Kumar
- Department of Mycology & Microbiology, Tea Research Association, North Bengal Regional R & D Center, Nagrakata, India
| | - Somnath Roy
- Entomology Department, Tea Research Association, Tocklai Tea Research Institute, Jorhat, India
| | - Azariah Babu
- Entomology Department, Tea Research Association, Tocklai Tea Research Institute, Jorhat, India
| | - Abhay K Pandey
- Department of Mycology & Microbiology, Tea Research Association, North Bengal Regional R & D Center, Nagrakata, India
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5
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Li C, Chen X, Yang J, Li J, Wang R, Xu H, Zhang F. Keystone root bacteria in Ambrosia artemisiifolia promote invasive growth by increasing the colonization rate of Funneliformis mosseae. Microbiol Res 2025; 293:128081. [PMID: 39904000 DOI: 10.1016/j.micres.2025.128081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2024] [Revised: 01/14/2025] [Accepted: 01/23/2025] [Indexed: 02/06/2025]
Abstract
Higher arbuscular mycorrhizal fungi (AMF) colonization rates in the roots of invasive plants than in those of native plants are associated with invasion success. Keystone plant-root bacteria (or root-associated bacteria) can influence plant growth by interacting with other members of the microbial community (eg.AMF). We aimed to investigate the effects of keystone taxa on AMF colonization and their interactions on invasive plant growth. Here, the common key root-associated species from the roots of Ambrosia artemisiifolia among four geographical populations in China were identified, and the strains were subsequently isolated. Plate and pot experiments were conducted to examine the impact of keystone species on the colonization of Funneliformis mosseae and elucidate the mechanisms that enhance plant growth. Sphingomonas was identified as a common keystone root-associated genus of A. artemisiifolia. Sphingomonas sanxanigenens was found to facilitate AMF colonization in the roots of A. artemisiifolia by promoting flavonoid biosynthesis. A synergistic effect on the growth of A. artemisiifolia was observed when the plant was co-inoculated with S. sanxanigenens and F. mosseae. This study provides new insights into the mechanisms whereby root-associated microbes facilitate AMF colonization in invasive plants. These findings confirm the pivotal role of keystone microbes in weed invasion and enhance our understanding that microbial synergistic interactions promote weed invasiveness.
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Affiliation(s)
- Chunying Li
- College of Life Science, Hebei University, Baoding, Hebei 071002, China
| | - Xue Chen
- School of Life Sciences, Fudan University, Yangpu, Shanghai 200433, China
| | - Jieyu Yang
- College of Life Science, Hebei University, Baoding, Hebei 071002, China
| | - Jun Li
- College of Life Science, Hebei University, Baoding, Hebei 071002, China
| | - Ruiyue Wang
- College of Life Science, Hebei University, Baoding, Hebei 071002, China
| | - Haiyun Xu
- College of Life Science, Hebei University, Baoding, Hebei 071002, China.
| | - Fengjuan Zhang
- College of Life Science, Hebei University, Baoding, Hebei 071002, China.
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6
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Wadhwa K, Kapoor N, Kaur H, Abu-Seer EA, Tariq M, Siddiqui S, Yadav VK, Niazi P, Kumar P, Alghamdi S. A Comprehensive Review of the Diversity of Fungal Secondary Metabolites and Their Emerging Applications in Healthcare and Environment. MYCOBIOLOGY 2024; 52:335-387. [PMID: 39845176 PMCID: PMC11749308 DOI: 10.1080/12298093.2024.2416736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Revised: 10/02/2024] [Accepted: 10/10/2024] [Indexed: 01/24/2025]
Abstract
Fungi and their natural products, like secondary metabolites, have gained a huge demand in the last decade due to their increasing applications in healthcare, environmental cleanup, and biotechnology-based industries. The fungi produce these secondary metabolites (SMs) during the different phases of their growth, which are categorized into terpenoids, alkaloids, polyketides, and non-ribosomal peptides. These SMs exhibit significant biological activity, which contributes to the formulation of novel pharmaceuticals, biopesticides, and environmental bioremediation agents. Nowadays, these fungal-derived SMs are widely used in food and beverages, for fermentation, preservatives, protein sources, and in dairy industries. In healthcare, it is being used as an antimicrobial, anticancer, anti-inflammatory, and immunosuppressive drug. The usage of modern tools of biotechnology can achieve an increase in demand for these SMs and large-scale production. The present review comprehensively analyses the diversity of fungal SMs along with their emerging applications in healthcare, agriculture, environmental sustainability, and nutraceuticals. Here, the authors have reviewed the recent advancements in genetic engineering, metabolic pathway manipulation, and synthetic biology to improve the production and yield of these SMs. Advancement in fermentation techniques, bioprocessing, and co-cultivation approaches for large-scale production of SMs. Investigators further highlighted the importance of omics technologies in understanding the regulation and biosynthesis of SMs, which offers an understanding of novel applications in drug discovery and sustainable agriculture. Finally, the authors have addressed the potential for genetic manipulation and biotechnological innovations for further exploitation of fungal SMs for commercial and environmental benefits.
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Affiliation(s)
- Khushbu Wadhwa
- Department of Zoology, Ramjas College, University of Delhi, Delhi, India
| | - Neha Kapoor
- Department of Chemistry, Hindu College, University of Delhi, Delhi, India
| | - Hardeep Kaur
- Department of Zoology, Ramjas College, University of Delhi, Delhi, India
| | - Eman A. Abu-Seer
- Department of Epidemiology and Medical Statistics, Faculty of Public Health and Health Informatics, Umm Al-Qura University, Mecca, Saudi Arabia
| | - Mohd. Tariq
- Department of Life Science, Parul Institute of Applied Sciences, Parul University, Vadodara, Gujarat, India
| | - Sazada Siddiqui
- Department of Biology, College of Science, King Khalid University, Abha, Saudi Arabia
| | - Virendra Kumar Yadav
- Marwadi University Research Center, Department of Microbiology, Faculty of Sciences, Marwadi University, Rajkot, Gujarat, India
| | - Parwiz Niazi
- Department of Biology, Faculty of Education, Kandahar University, Kandahar, Afghanistan
- Department of Plant Protection, Faculty of Agriculture, EGE University, İzmir, Turkey
| | - Pankaj Kumar
- Department of Environmental Science, Parul Institute of Applied Sciences, Parul University, Vadodara, Gujarat, India
| | - Saad Alghamdi
- Department of Clinical Laboratory Sciences, Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah, Saudi Arabia
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Unger K, Raza SAK, Mayer T, Reichelt M, Stuttmann J, Hielscher A, Wittstock U, Gershenzon J, Agler MT. Glucosinolate structural diversity shapes recruitment of a metabolic network of leaf-associated bacteria. Nat Commun 2024; 15:8496. [PMID: 39353951 PMCID: PMC11445407 DOI: 10.1038/s41467-024-52679-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 09/13/2024] [Indexed: 10/03/2024] Open
Abstract
Host defenses can have broader ecological roles, but how they shape natural microbiome recruitment is poorly understood. Aliphatic glucosinolates (GLSs) are secondary defense metabolites in Brassicaceae plant leaves. Their genetically defined structure shapes interactions with pests in Arabidopsis thaliana leaves, and here we find that it also shapes bacterial recruitment. In model genotype Col-0, GLSs (mostly 4-methylsulfinylbutyl-GLS) have no clear effect on natural leaf bacterial recruitment. In a genotype from a wild population, however, GLSs (mostly allyl-GLS) enrich specific taxa, mostly Comamonadaceae and Oxalobacteraceae. Consistently, Comamonadaceae are also enriched in wild A. thaliana, and Oxalobacteraceae are enriched from wild plants on allyl-GLS as carbon source, but not on 4-methylsulfinylbutyl-GLS. Recruitment differences between GLS structures most likely arise from bacterial myrosinase specificity. Community recruitment is then defined by metabolic cross-feeding among bacteria. The link of genetically defined metabolites to recruitment could lead to new strategies to shape plant microbiome balance.
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Affiliation(s)
- Kerstin Unger
- Institute for Microbiology, Plant Microbiosis Group, Friedrich Schiller University Jena, Jena, Germany
| | - Syed Ali Komail Raza
- Institute for Microbiology, Plant Microbiosis Group, Friedrich Schiller University Jena, Jena, Germany
| | - Teresa Mayer
- Institute for Microbiology, Plant Microbiosis Group, Friedrich Schiller University Jena, Jena, Germany
- Schülerforschungszentrum Berchtesgaden, Didactics of Life Science, Technical University of Munich, Munich, Germany
| | - Michael Reichelt
- Department of Biochemistry, Max-Planck-Institute for Chemical Ecology, Jena, Germany
| | - Johannes Stuttmann
- CEA, CNRS, BIAM, UMR7265, LEMiRE (Rhizosphère et Interactions sol-plante-microbiote), Aix Marseille University, 13115, Saint-Paul lez Durance, France
| | - Annika Hielscher
- Institute of Pharmaceutical Biology, Technische Universität Braunschweig, Braunschweig, Germany
| | - Ute Wittstock
- Institute of Pharmaceutical Biology, Technische Universität Braunschweig, Braunschweig, Germany
| | - Jonathan Gershenzon
- Department of Biochemistry, Max-Planck-Institute for Chemical Ecology, Jena, Germany
| | - Matthew T Agler
- Institute for Microbiology, Plant Microbiosis Group, Friedrich Schiller University Jena, Jena, Germany.
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8
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Çiçek SS, Mangoni A, Hanschen FS, Agerbirk N, Zidorn C. Essentials in the acquisition, interpretation, and reporting of plant metabolite profiles. PHYTOCHEMISTRY 2024; 220:114004. [PMID: 38331135 DOI: 10.1016/j.phytochem.2024.114004] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Revised: 01/22/2024] [Accepted: 01/23/2024] [Indexed: 02/10/2024]
Abstract
Plant metabolite profiling reveals the diversity of secondary or specialized metabolites in the plant kingdom with its hundreds of thousands of species. Specialized plant metabolites constitute a vast class of chemicals posing significant challenges in analytical chemistry. In order to be of maximum scientific relevance, reports dealing with these compounds and their source species must be transparent, make use of standards and reference materials, and be based on correctly and traceably identified plant material. Essential aspects in qualitative plant metabolite profiling include: (i) critical review of previous literature and a reasoned sampling strategy; (ii) transparent plant sampling with wild material documented by vouchers in public herbaria and, optimally, seed banks; (iii) if possible, inclusion of generally available reference plant material; (iv) transparent, documented state-of-the art chemical analysis, ideally including chemical reference standards; (v) testing for artefacts during preparative extraction and isolation, using gentle analytical methods; (vi) careful chemical data interpretation, avoiding over- and misinterpretation and taking into account phytochemical complexity when assigning identification confidence levels, and (vii) taking all previous scientific knowledge into account in reporting the scientific data. From the current stage of the phytochemical literature, selected comments and suggestions are given. In the past, proposed revisions of botanical taxonomy were sometimes based on metabolite profiles, but this approach ("chemosystematics" or "chemotaxonomy") is outdated due to the advent of DNA sequence-based phylogenies. In contrast, systematic comparisons of plant metabolite profiles in a known phylogenetic framework remain relevant. This approach, known as chemophenetics, allows characterizing species and clades based on their array of specialized metabolites, aids in deducing the evolution of biosynthetic pathways and coevolution, and can serve in identifying new sources of rare and economically interesting natural products.
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Affiliation(s)
- Serhat S Çiçek
- Department of Biotechnology, Hamburg University of Applied Sciences, Ulmenliet 20, 21033, Hamburg, Germany
| | - Alfonso Mangoni
- Dipartimento di Farmacia, Università di Napoli Federico II, Via Domenico Montesano 49, 80131, Napoli, Italy
| | - Franziska S Hanschen
- Plant Quality and Food Security, Leibniz Institute of Vegetable and Ornamental Crops (IGZ) e. V., Theodor-Echtermeyer-Weg 1, 14979, Grossbeeren, Germany
| | - Niels Agerbirk
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg, Denmark
| | - Christian Zidorn
- Pharmazeutisches Institut, Abteilung Pharmazeutische Biologie, Christian-Albrechts- Universität zu Kiel, Gutenbergstraße 76, 24118, Kiel, Germany.
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