A tectonically driven Ediacaran oxygenation event

The Ancestor and Evolution of the Giant Muscle Protein Connectin/Titin

The emergence of connectin, also called titin, a muscular spring and the largest protein in living organisms, is critical in metazoan evolution as it enables striated muscle-based locomotion. However, its evolutionary history remains unclear. Here, we investigated the evolutionary process using genomic analysis and deduced the ancestor of connectin. The region between the HOX and WNT clusters in the human genome, where the connectin gene (CON (TTN)) is located, was quadrupled by two rounds of whole-genome duplication (WGD) in the ancestor of jawed vertebrates. However, connectin ohnologs were deleted before the advent of jawed vertebrates, resulting in a single connectin gene. Additionally, one of the connectin ohnologs created by the third round of teleost WGD disappeared, while the other was duplicated on the same chromosome. We also discovered that the connectin and connectin family genes consistently underwent local duplication on the same chromosome, though the underlying mechanism remains unknown. Using synteny analysis, we identified KALRN and its ohnolog TRIO as putative ancestral paralogs of the connectin gene. TRIO/KALRN has a connected structure of SESTD1-CCDC141-CON (TTN), and its synteny is conserved in the Drosophila genome. Furthermore, we confirmed that this connected structure, termed 'connectitin,' (connected-connectin/titin) is conserved in cnidarians and placozoans. Molecular phylogenetic analysis revealed that it diverged from TRIO/KALRN prior to the emergence of these animals, suggesting that metazoan muscle may have a single origin. These findings enhance our understanding of the evolutionary processes of striated muscles in the animal kingdom.

Paleoproterozoic Mississippi Valley-type mineralization at Black Angel, Greenland: evidence from sulfide δ66Zn and rhenium-osmium geochronology

We provide timestamps for the major zinc-lead (Zn-Pb) Mississippi Valley-type Black Angel deposit (Greenland) based on new pyrite rhenium-osmium (Re-Os) isotope geochemistry data: (1) a Re-Os isochron age 1,884 ± 35 million years ago (Ma - 2σ, 1.8%) for subhedral pyrite cemented by sphalerite ± galena in dolomitized clean limestone, and, (2) a Re-Os model age 1,828 ± 16 Ma (2σ, 0.9%) for epigenetic massive pyrite in siltstone/mudstone cap rock. Zinc-lead mineralization in evaporite-bearing carbonates in the Karrat Basin took place ca. 1,884 Ma at the time of far-field fluid flow associated with back-arc spreading ca. 1,900-1,850 Ma. Mineralization predates the development of the Rinkian foreland basin (ca. 1,850 - < 1,800 Ma) and a collisional stage (ca. 1,830 - < 1,800 Ma) in the context of the telescoping Rinkian and the Nagssugtoqidian Orogens. Replacement of clean carbonate and sustained acid neutralization led to significant sphalerite precipitation ca. 1,884 Ma. Conversely, precipitation of epigenetic massive pyrite in the cap rock ca. 1,828 Ma may signal (1) the lack of chemical reactivity of the cap rock for the pH-buffered conditions needed for Zn-Pb mineralization, and (2) the unfavorable impact of incipient regional Rinkian metamorphism (ca. 1,830-1,800 Ma) and tectonic compression on aquifer permeability and continued brine migration. The initial 187Os/188Os ratio (Osi-pyrite = 1.07 ± 0.32) from isochron regression identifies a crustal origin for Os and, by corollary, other metals in the ca. 1,884 Ma Zn-Pb mineralization. Although the Rae Craton basement rocks comprise the dominant source for metals (based on our Osi-pyrite and δ66Znpyrite/sphalerite data), we identify a complementary contribution in Zn (maximum 12-24%) from Paleoproterozoic sedimentary carbonate. This source of Zn in sedimentary calcite is deemed possible in the context of Paleoproterozoic seawater at high Na/Cl ratio and in the absence of Zn-based eukaryotic metabolism in shallow marine environment.

Supplementary Information

The online version contains supplementary material available at 10.1007/s00126-024-01332-w.

Mechanisms of U enrichment and helium generation potential in marine black shales following U isotope-constrained Neoproterozoic Oxidation Event

Following the NOE, the early Cambrian witnessed the global deposition of marine black shales with high U concentrations. This study analyzes the Lower Cambrian Yuertusi Formation in the Tarim Basin, China, focusing on U isotopes to elucidate U enrichment mechanisms in black shales and their potential for helium generation. In wells XK-1, LT-1, and LT-3, the average U concentrations in the Yuertusi Formation black shale are 41.7 ppm, 29.21 ppm, and 275.28 ppm, respectively. U enrichment in black shales is jointly controlled by continental weathering, paleoproductivity, oceanic oxidation, and organic matter. A synchronous increase in global atmospheric oxygen levels and weathering processes, leading to the continuous weathering of land rocks rich in U and nutrient elements, which were then transported to the ocean by rivers, laying the foundation for U enrichment in black shales and the accumulation of organic matter. The δ238U values of the Yuertusi Formation range from -0.44 ‰ to 0.37 ‰, showing two phases of first positive and then negative drift in δ238U values, reflecting a process where the area of oceanic oxidation experienced an expansion followed by contraction. During the expansion of the oceanic oxidation area, the paleoproductivity and U concentration in the oceanic oxidation layer increased, allowing soluble U elements to accumulate in black shales through reduction and organic matter adsorption in deep water anoxic environments. Conversely, during the contraction of the oceanic oxidation area, the U concentration in the oceanic oxidation layer decreased, resulting in significantly lower U concentration in the deposited dolostones or limestones compared to black shales. The early Cambrian black shales enriched with U can serve as effective helium source rocks, with an estimated cumulative release of approximately 1382 × 108 m3 of helium gas. The insights gained from this study are significant for understanding the redox state of the ocean following the NOE and for guiding the exploration of ultra-deep helium gas.

The importance of continents, oceans and plate tectonics for the evolution of complex life: implications for finding extraterrestrial civilizations

Within the uncertainties of involved astronomical and biological parameters, the Drake Equation typically predicts that there should be many exoplanets in our galaxy hosting active, communicative civilizations (ACCs). These optimistic calculations are however not supported by evidence, which is often referred to as the Fermi Paradox. Here, we elaborate on this long-standing enigma by showing the importance of planetary tectonic style for biological evolution. We summarize growing evidence that a prolonged transition from Mesoproterozoic active single lid tectonics (1.6 to 1.0 Ga) to modern plate tectonics occurred in the Neoproterozoic Era (1.0 to 0.541 Ga), which dramatically accelerated emergence and evolution of complex species. We further suggest that both continents and oceans are required for ACCs because early evolution of simple life must happen in water but late evolution of advanced life capable of creating technology must happen on land. We resolve the Fermi Paradox (1) by adding two additional terms to the Drake Equation: foc (the fraction of habitable exoplanets with significant continents and oceans) and fpt (the fraction of habitable exoplanets with significant continents and oceans that have had plate tectonics operating for at least 0.5 Ga); and (2) by demonstrating that the product of foc and fpt is very small (< 0.00003-0.002). We propose that the lack of evidence for ACCs reflects the scarcity of long-lived plate tectonics and/or continents and oceans on exoplanets with primitive life.

Evolution of the crustal phosphorus reservoir

The release of phosphorus (P) from crustal rocks during weathering plays a key role in determining the size of Earth's biosphere, yet the concentration of P in crustal rocks over time remains controversial. Here, we combine spatial, temporal, and chemical measurements of preserved rocks to reconstruct the lithological and chemical evolution of Earth's continental crust. We identify a threefold increase in average crustal P concentrations across the Neoproterozoic-Phanerozoic boundary (600 to 400 million years), showing that preferential biomass burial on shelves acted to progressively concentrate P within continental crust. Rapid compositional change was made possible by massive removal of ancient P-poor rock and deposition of young P-rich sediment during an episode of enhanced global erosion. Subsequent weathering of newly P-rich crust led to increased riverine P fluxes to the ocean. Our results suggest that global erosion coupled to sedimentary P-enrichment forged a markedly nutrient-rich crust at the dawn of the Phanerozoic.

Ferritins in Chordata: Potential evolutionary trajectory marked by discrete selective pressures: History and reclassification of ferritins in chordates and geological events' influence on their evolution and radiation

Ferritins (FTs) are iron storage proteins that are involved in managing iron-oxygen balance. In our work, we present a hypothesis on the putative effect of geological changes that have affected the evolution and radiation of ferritin proteins. Based on sequence analysis and phylogeny reconstruction, we hypothesize that two significant factors have been involved in the evolution of ferritin proteins: fluctuations of atmospheric oxygen concentrations, altering redox potential, and changing availability of water rich in bioavailable ferric ions. Fish, ancient amphibians, reptiles, and placental mammals developed the broadest repertoire of singular FTs, attributable to embryonic growth in aquatic environments containing low oxygen levels and abundant forms of soluble iron. In contrast, oviparous land vertebrates, like reptiles and birds, that have developed in high oxygen levels and limited levels of environmental Fe²⁺ exhibit a lower diversity of singular FTs, but display a broad repertoire of subfamilies, particularly notable in early reptiles.

On the use of models in understanding the rise of complex life

Recently, several seemingly irreconcilably different models have been proposed for relationships between Earth system processes and the rise of complex life. These models provide very different scenarios of Proterozoic atmospheric oxygen and ocean nutrient levels, whether they constrained complex life, and of how the rise of complex life affected biogeochemical conditions. For non-modellers, it can be hard to evaluate which-if any-of the models and their results have more credence-hence this article. I briefly review relevant hypotheses, how models are being used to incarnate and sometimes test those hypotheses, and key principles of biogeochemical cycling models should embody. Then I critically review the use of biogeochemical models in: inferring key variables from proxies; reconstructing ancient biogeochemical cycling; and examining how complex life affected biogeochemical cycling. Problems are found in published model results purporting to demonstrate long-term stable states of very low Proterozoic atmospheric pO2 and ocean P levels. I explain what they stem from and highlight key empirical uncertainties that need to be resolved. Then I suggest how models and data can be better combined to advance our scientific understanding of the relationship between Earth system processes and the rise of complex life.

Reconciling proxy records and models of Earth's oxygenation during the Neoproterozoic and Palaeozoic

A hypothesized rise in oxygen levels in the Neoproterozoic, dubbed the Neoproterozoic Oxygenation Event, has been repeatedly linked to the origin and rise of animal life. However, a new body of work has emerged over the past decade that questions this narrative. We explore available proxy records of atmospheric and marine oxygenation and, considering the unique systematics of each geochemical system, attempt to reconcile the data. We also present new results from a comprehensive COPSE biogeochemical model that combines several recent additions, to create a continuous model record from 850 to 250 Ma. We conclude that oxygen levels were intermediate across the Ediacaran and early Palaeozoic, and highly dynamic. Stable, modern-like conditions were not reached until the Late Palaeozoic. We therefore propose that the terms Neoproterozoic Oxygenation Window and Palaeozoic Oxygenation Event are more appropriate descriptors of the rise of oxygen in Earth's atmosphere and oceans.

Ediacaran reorganization of the marine phosphorus cycle

The evolution of macroscopic animals in the latest Proterozoic Eon is associated with many changes in the geochemical environment, but the sequence of cause and effect remains a topic of intense research and debate. In this study, we use two apparently paradoxical observations—that massively phosphorus-rich rocks first appear at this time, and that the median P content of rocks does not change—to argue for a change in internal marine P cycling associated with rising sulfate levels. We argue that this change was self-sustaining, setting in motion a cascade of biogeochemical transformations that led to conditions favorable for major ecological and evolutionary change.

The Ediacaran Period (635 to 541 Ma) marks the global transition to a more productive biosphere, evidenced by increased availability of food and oxidants, the appearance of macroscopic animals, significant populations of eukaryotic phytoplankton, and the onset of massive phosphorite deposition. We propose this entire suite of changes results from an increase in the size of the deep-water marine phosphorus reservoir, associated with rising sulfate concentrations and increased remineralization of organic P by sulfate-reducing bacteria. Simple mass balance calculations, constrained by modern anoxic basins, suggest that deep-water phosphate concentrations may have increased by an order of magnitude without any increase in the rate of P input from the continents. Strikingly, despite a major shift in phosphorite deposition, a new compilation of the phosphorus content of Neoproterozoic and early Paleozoic shows little secular change in median values, supporting the view that changes in remineralization and not erosional P fluxes were the principal drivers of observed shifts in phosphorite accumulation. The trigger for these changes may have been transient Neoproterozoic weathering events whose biogeochemical consequences were sustained by a set of positive feedbacks, mediated by the oxygen and sulfur cycles, that led to permanent state change in biogeochemical cycling, primary production, and biological diversity by the end of the Ediacaran Period.

Dynamic and synchronous changes in metazoan body size during the Cambrian Explosion

Many aspects of the drivers for, and evolutionary dynamics of, the Cambrian Explosion are poorly understood. Here we quantify high-resolution changes in species body size in major metazoan groups on the Siberian Platform during the early Cambrian (ca. 540–510 Million years ago (Ma)). Archaeocyath sponges, hyolith lophophorates, and helcionelloid mollusc species show dynamic and synchronous trends over million-year timescales, with peaks in body size during the latest Tommotian/early Atbadanian and late Atdabanian/early Botoman, and notably small body sizes in the middle Atdabanian and after the Sinsk anoxic extinction event, starting ca. 513 Ma. These intervals of body size changes are also mirrored in individual species and correlate positively with increased rates of origination and broadly with total species diversity. Calcitic brachiopods (rhynchonelliformeans), however, show a general increase in body size following the increase in species diversity through this interval: phosphatic brachiopods (linguliformeans) show a body size decrease that negatively correlates with diversity. Both brachiopod groups show a rapid recovery at the Sinsk Event. The synchronous changes in these metrics in archaeocyath, hyoliths and helcionelloids suggest the operation of external drivers through the early Cambrian, such as episodic changes in oxygenation or productivity. But the trends shown by brachiopods suggests a differing physiological response. Together, these dynamics created both the distinct evolutionary record of metazoan groups during the Cambrian Explosion and determined the nature of its termination.

Great Oxidation and Lomagundi events linked by deep cycling and enhanced degassing of carbon

For approximately the first 2 billion years of Earth history, atmospheric oxygen levels were extremely low. It wasn't until at least half a billion years after the evolution of oxygenic photosynthesis, perhaps as early as 3 billion years ago, that oxygen rose to appreciable levels during the Great Oxidation event. Shortly after, marine carbonates experienced a large positive spike in carbon isotope ratios known as the Lomagundi event. The mechanisms responsible for the Great Oxidation and Lomagundi events remain debated. Using a carbon-oxygen box model which tracks surface and interior C fluxes and reservoirs while also tracking C isotopes and atmospheric oxygen levels we demonstrate that about 2.5 billion years ago a tectonic transition resulting in increased volcanic CO₂ emissions could have led to increased deposition of both carbonates and organic carbon via enhanced weathering and nutrient delivery to oceans. Increased burial of carbonates and organic carbon would have allowed accumulation of atmospheric oxygen while also increasing delivery of carbon to subduction zones. Coupled with preferential release of carbonates at arc volcanoes and deep recycling of organic C to ocean island volcanoes we find such a tectonic transition can simultaneously explain the Great Oxidation and Lomagundi events without any change in the fraction of carbon buried as organic carbon relative to carbonate, which is often invoked to explain carbon isotope excursions.