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For: Wu S, Xiang C, Zhou Y, Khan MSH, Liu W, Feiler CG, Wei R, Weber G, Höhne M, Bornscheuer UT. A growth selection system for the directed evolution of amine-forming or converting enzymes. Nat Commun 2022;13:7458. [PMID: 36460668 DOI: 10.1038/s41467-022-35228-y] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Accepted: 11/23/2022] [Indexed: 12/05/2022]  Open
Number Cited by Other Article(s)
1
Zhou G, Zhou Z, Feng D, Fan W, Luo Q, Lu X. Rich analytic toolbox for the exploration, characterization, screening, and application studies of ω-transaminases. Biotechnol Adv 2025;82:108597. [PMID: 40349807 DOI: 10.1016/j.biotechadv.2025.108597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2025] [Revised: 04/18/2025] [Accepted: 05/09/2025] [Indexed: 05/14/2025]
2
Lü X, Fan S, Lü R, Zong L, Xia Z, Jin Y, Zhang Z, Yang Z. Deep learning-driven semi-rational design in phenylalanine ammonia-lyase for enhanced catalytic efficiency. Int J Biol Macromol 2025;305:141024. [PMID: 39984092 DOI: 10.1016/j.ijbiomac.2025.141024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2024] [Revised: 12/31/2024] [Accepted: 02/12/2025] [Indexed: 02/23/2025]
3
Bayer T, Wu S, Snajdrova R, Baldenius K, Bornscheuer UT. An Update: Enzymatic Synthesis for Industrial Applications. Angew Chem Int Ed Engl 2025:e202505976. [PMID: 40241335 DOI: 10.1002/anie.202505976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2025] [Revised: 04/08/2025] [Accepted: 04/09/2025] [Indexed: 04/18/2025]
4
Xiang C, Ce YK, Xue YP, Zheng YG. The pedal-like loop of (R)-selective transaminases plays a critical role to the functionality of the enzyme. Biotechnol Lett 2025;47:35. [PMID: 40100435 DOI: 10.1007/s10529-025-03577-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2024] [Revised: 02/26/2025] [Accepted: 03/05/2025] [Indexed: 03/20/2025]
5
Yang Z, Thompson S, Zhang Y, Rutten I, Van Duyse J, Van Isterdael G, Nichols L, Lammertyn J, Soh HT, Fordyce P. Continuous FACS sorting of double emulsion picoreactors with a 3D printed vertical mixer. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.03.13.643134. [PMID: 40161623 PMCID: PMC11952560 DOI: 10.1101/2025.03.13.643134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 04/02/2025]
6
Logotheti M, Gehres S, França AS, Bornscheuer UT, de Souza ROMA, Höhne M. Combining Photochemical Oxyfunctionalization and Enzymatic Catalysis for the Synthesis of Chiral Pyrrolidines and Azepanes. J Org Chem 2025;90:1036-1043. [PMID: 39772597 PMCID: PMC11744798 DOI: 10.1021/acs.joc.4c02228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2024] [Revised: 11/20/2024] [Accepted: 12/05/2024] [Indexed: 01/11/2025]
7
Sun C, Lu G, Chen B, Li G, Wu Y, Brack Y, Yi D, Ao YF, Wu S, Wei R, Sun Y, Zhai G, Bornscheuer UT. Direct asymmetric synthesis of β-branched aromatic α-amino acids using engineered phenylalanine ammonia lyases. Nat Commun 2024;15:8264. [PMID: 39327443 PMCID: PMC11427684 DOI: 10.1038/s41467-024-52613-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Accepted: 09/16/2024] [Indexed: 09/28/2024]  Open
8
Li F, Scheller S, Lienemann M. A growth-based screening strategy for engineering the catalytic activity of an oxygen-sensitive formate dehydrogenase. Appl Environ Microbiol 2024;90:e0147224. [PMID: 39194220 PMCID: PMC11409667 DOI: 10.1128/aem.01472-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Accepted: 07/27/2024] [Indexed: 08/29/2024]  Open
9
Cheng F, Sun KX, Gong XX, Peng W, Zhang HY, Liang XH, Xue YP, Zheng YG. Development of growth selection system and pocket engineering of d-amino acid oxidase to enhance selective deamination activity toward d-phosphinothricin. Biotechnol Bioeng 2024;121:2893-2906. [PMID: 38822747 DOI: 10.1002/bit.28763] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2023] [Revised: 03/31/2024] [Accepted: 05/22/2024] [Indexed: 06/03/2024]
10
Chen A, Zhang XD, Đelmaš AĐ, Weitz DA, Milcic K. Systems and Methods for Continuous Evolution of Enzymes. Chemistry 2024;30:e202400880. [PMID: 38780896 DOI: 10.1002/chem.202400880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 05/21/2024] [Accepted: 05/23/2024] [Indexed: 05/25/2024]
11
Qiu S, Ju CL, Wang T, Chen J, Cui YT, Wang LQ, Fan FF, Huang J. Evolving ω-amine transaminase AtATA guided by substrate-enzyme binding free energy for enhancing activity and stability against non-natural substrates. Appl Environ Microbiol 2024;90:e0054324. [PMID: 38864627 PMCID: PMC11267935 DOI: 10.1128/aem.00543-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Accepted: 05/15/2024] [Indexed: 06/13/2024]  Open
12
Guan A, He Z, Wang X, Jia ZJ, Qin J. Engineering the next-generation synthetic cell factory driven by protein engineering. Biotechnol Adv 2024;73:108366. [PMID: 38663492 DOI: 10.1016/j.biotechadv.2024.108366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 03/21/2024] [Accepted: 04/22/2024] [Indexed: 05/09/2024]
13
Branson Y, Schnell B, Zurr C, Bayer T, Badenhorst CPS, Wei R, Bornscheuer UT. An Extremely Sensitive Ultra-High Throughput Growth Selection Assay for the Identification of Amidase Activity. Appl Microbiol Biotechnol 2024;108:392. [PMID: 38910173 PMCID: PMC11194204 DOI: 10.1007/s00253-024-13233-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Revised: 06/05/2024] [Accepted: 06/10/2024] [Indexed: 06/25/2024]
14
Bidart GN, Hyeuk S, Alter TB, Yang L, Welner DH. A growth selection system for sucrose synthases (SuSy): design and test. AMB Express 2024;14:70. [PMID: 38865019 PMCID: PMC11169191 DOI: 10.1186/s13568-024-01727-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Accepted: 05/27/2024] [Indexed: 06/13/2024]  Open
15
Zhou SP, Xue YP, Zheng YG. Maximizing the potential of nitrilase: Unveiling their diversity, catalytic proficiency, and versatile applications. Biotechnol Adv 2024;72:108352. [PMID: 38574900 DOI: 10.1016/j.biotechadv.2024.108352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 03/10/2024] [Accepted: 03/30/2024] [Indexed: 04/06/2024]
16
Orsi E, Schada von Borzyskowski L, Noack S, Nikel PI, Lindner SN. Automated in vivo enzyme engineering accelerates biocatalyst optimization. Nat Commun 2024;15:3447. [PMID: 38658554 PMCID: PMC11043082 DOI: 10.1038/s41467-024-46574-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 03/04/2024] [Indexed: 04/26/2024]  Open
17
Jansen S, Mayer C. A Robust Growth-Based Selection Platform to Evolve an Enzyme via Dependency on Noncanonical Tyrosine Analogues. JACS AU 2024;4:1583-1590. [PMID: 38665651 PMCID: PMC11040555 DOI: 10.1021/jacsau.4c00070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 02/21/2024] [Accepted: 02/22/2024] [Indexed: 04/28/2024]
18
Farkas E, Sátorhelyi P, Szakács Z, Dékány M, Vaskó D, Hornyánszky G, Poppe L, Éles J. Transaminase-catalysis to produce trans-4-substituted cyclohexane-1-amines including a key intermediate towards cariprazine. Commun Chem 2024;7:86. [PMID: 38637664 PMCID: PMC11026398 DOI: 10.1038/s42004-024-01148-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Accepted: 03/13/2024] [Indexed: 04/20/2024]  Open
19
Li C, Gao X, Li H, Wang T, Lu F, Qin H. Growth-Coupled Evolutionary Pressure Improving Epimerases for D-Allulose Biosynthesis Using a Biosensor-Assisted In Vivo Selection Platform. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024;11:e2306478. [PMID: 38308132 PMCID: PMC11005681 DOI: 10.1002/advs.202306478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Revised: 11/22/2023] [Indexed: 02/04/2024]
20
Fan S, Wei X, Lü R, Feng C, Zhang Q, Lü X, Jin Y, Yan M, Yang Z. Roles of the N-terminal motif in improving the activity and soluble expression of phenylalanine ammonia lyases in Escherichia coli. Int J Biol Macromol 2024;262:130248. [PMID: 38367782 DOI: 10.1016/j.ijbiomac.2024.130248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Revised: 02/08/2024] [Accepted: 02/14/2024] [Indexed: 02/19/2024]
21
Hendricks AR, Cohen RS, McEwen GA, Tien T, Guilliams BF, Alspach A, Snow CD, Ackerson CJ. Laboratory Evolution of Metalloid Reductase Substrate Recognition and Nanoparticle Product Size. ACS Chem Biol 2024;19:289-299. [PMID: 38295274 DOI: 10.1021/acschembio.3c00493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2024]
22
Du H, Liang Y, Li J, Yuan X, Tao F, Dong C, Shen Z, Sui G, Wang P. Directed Evolution of 4-Hydroxyphenylpyruvate Biosensors Based on a Dual Selection System. Int J Mol Sci 2024;25:1533. [PMID: 38338812 PMCID: PMC10855707 DOI: 10.3390/ijms25031533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 01/12/2024] [Accepted: 01/23/2024] [Indexed: 02/12/2024]  Open
23
Guan A, Hou Y, Yang R, Qin J. Enzyme engineering for functional lipids synthesis: recent advance and perspective. BIORESOUR BIOPROCESS 2024;11:1. [PMID: 38647956 PMCID: PMC10992173 DOI: 10.1186/s40643-023-00723-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Accepted: 12/24/2023] [Indexed: 04/25/2024]  Open
24
Xi C, Diao J, Moon TS. Advances in ligand-specific biosensing for structurally similar molecules. Cell Syst 2023;14:1024-1043. [PMID: 38128482 PMCID: PMC10751988 DOI: 10.1016/j.cels.2023.10.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2023] [Revised: 08/23/2023] [Accepted: 10/19/2023] [Indexed: 12/23/2023]
25
Li Z, Deng Y, Yang GY. Growth-coupled high throughput selection for directed enzyme evolution. Biotechnol Adv 2023;68:108238. [PMID: 37619825 DOI: 10.1016/j.biotechadv.2023.108238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 08/03/2023] [Accepted: 08/20/2023] [Indexed: 08/26/2023]
26
Liu Z, Chen S, Wu J. Advances in ultrahigh-throughput screening technologies for protein evolution. Trends Biotechnol 2023;41:1168-1181. [PMID: 37088569 DOI: 10.1016/j.tibtech.2023.03.010] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 02/28/2023] [Accepted: 03/14/2023] [Indexed: 04/25/2023]
27
Küng C, Vanella R, Nash MA. Directed evolution of Rhodotorula gracilisd-amino acid oxidase using single-cell hydrogel encapsulation and ultrahigh-throughput screening. REACT CHEM ENG 2023;8:1960-1968. [PMID: 37496730 PMCID: PMC10366730 DOI: 10.1039/d3re00002h] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Accepted: 04/15/2023] [Indexed: 07/28/2023]
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