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Kedir WM, Li L, Tan YS, Bajalovic N, Loke DK. Nanomaterials and methods for cancer therapy: 2D materials, biomolecules, and molecular dynamics simulations. J Mater Chem B 2024; 12:12141-12173. [PMID: 39502031 DOI: 10.1039/d4tb01667j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2024]
Abstract
This review explores the potential of biomolecule-based nanomaterials, i.e., protein, peptide, nucleic acid, and polysaccharide-based nanomaterials, in cancer nanomedicine. It highlights the wide range of design possibilities for creating multifunctional nanomedicines using these biomolecule-based nanomaterials. This review also analyzes the primary obstacles in cancer nanomedicine that can be resolved through the usage of nanomaterials based on biomolecules. It also examines the unique in vivo characteristics, programmability, and biological functionalities of these biomolecule-based nanomaterials. This summary outlines the most recent advancements in the development of two-dimensional semiconductor-based nanomaterials for cancer theranostic purposes. It focuses on the latest developments in molecular simulations and modelling to provide a clear understanding of important uses, techniques, and concepts of nanomaterials in drug delivery and synthesis processes. Finally, the review addresses the challenges in molecular simulations, and generating, analyzing, and developing biomolecule-based and two-dimensional semiconductor-based nanomaterials, and highlights the barriers that must be overcome to facilitate their application in clinical settings.
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Affiliation(s)
- Welela M Kedir
- Department of Science, Mathematics and Technology, Singapore University of Technology and Design, Singapore 487372, Singapore.
| | - Lunna Li
- Thomas Young Centre and Department of Chemical Engineering, University College London, London WC1E 7JE, UK
| | - Yaw Sing Tan
- Bioinformatics Institute, Agency for Science, Technology and Research (A*STAR), Singapore 138671, Singapore
| | - Natasa Bajalovic
- Department of Science, Mathematics and Technology, Singapore University of Technology and Design, Singapore 487372, Singapore.
| | - Desmond K Loke
- Department of Science, Mathematics and Technology, Singapore University of Technology and Design, Singapore 487372, Singapore.
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Dal Corso J, Newton RJ, Zerkle AL, Chu D, Song H, Song H, Tian L, Tong J, Di Rocco T, Claire MW, Mather TA, He T, Gallagher T, Shu W, Wu Y, Bottrell SH, Metcalfe I, Cope HA, Novak M, Jamieson RA, Wignall PB. Repeated pulses of volcanism drove the end-Permian terrestrial crisis in northwest China. Nat Commun 2024; 15:7628. [PMID: 39223125 PMCID: PMC11368959 DOI: 10.1038/s41467-024-51671-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2023] [Accepted: 08/12/2024] [Indexed: 09/04/2024] Open
Abstract
The Permo-Triassic mass extinction was linked to catastrophic environmental changes and large igneous province (LIP) volcanism. In addition to the widespread marine losses, the Permo-Triassic event was the most severe terrestrial ecological crisis in Earth's history and the only known mass extinction among insects, but the cause of extinction on land remains unclear. In this study, high-resolution Hg concentration records and multiple-archive S-isotope analyses of sediments from the Junggar Basin (China) provide evidence of repeated pulses of volcanic-S (acid rain) and increased Hg loading culminating in a crisis of terrestrial biota in the Junggar Basin coeval with the interval of LIP emplacement. Minor S-isotope analyses are, however, inconsistent with total ozone layer collapse. Our data suggest that LIP volcanism repeatedly stressed end-Permian terrestrial environments in the ~300 kyr preceding the marine extinction locally via S-driven acidification and deposition of Hg, and globally via pulsed addition of CO2.
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Affiliation(s)
- Jacopo Dal Corso
- School of Earth and Environment, University of Leeds, Leeds, UK.
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China.
| | - Robert J Newton
- School of Earth and Environment, University of Leeds, Leeds, UK.
| | - Aubrey L Zerkle
- School of Earth and Environmental Sciences and Centre for Exoplanet Science, University of St Andrews, St Andrews, UK
- Blue Marble Space Institute of Science, Seattle, WA, USA
| | - Daoliang Chu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | - Haijun Song
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | - Huyue Song
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | - Li Tian
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | - Jinnan Tong
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | - Tommaso Di Rocco
- School of Earth and Environmental Sciences and Centre for Exoplanet Science, University of St Andrews, St Andrews, UK
- Geochemistry and Isotope Geology Department, Geosciences Center, University of Göttingen, Göttingen, Germany
| | - Mark W Claire
- School of Earth and Environmental Sciences and Centre for Exoplanet Science, University of St Andrews, St Andrews, UK
- Blue Marble Space Institute of Science, Seattle, WA, USA
| | - Tamsin A Mather
- Department of Earth Sciences, University of Oxford, Oxford, UK
| | - Tianchen He
- School of Earth and Environment, University of Leeds, Leeds, UK
- College of Oceanography, Hohai University, Nanjing, China
| | | | - Wenchao Shu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | - Yuyang Wu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | | | - Ian Metcalfe
- Division of Earth Science, School of Environmental and Rural Science, University of New England, Armidale, New South Wales, Australia
| | - Helen A Cope
- School of Earth and Environment, University of Leeds, Leeds, UK
| | - Martin Novak
- Department of Environmental Geochemistry and Biogeochemistry, Czech Geological Survey, Prague, Czech Republic
| | | | - Paul B Wignall
- School of Earth and Environment, University of Leeds, Leeds, UK
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Wu Q, Zhang H, Ramezani J, Zhang FF, Erwin DH, Feng Z, Shao LY, Cai YF, Zhang SH, Xu YG, Shen SZ. The terrestrial end-Permian mass extinction in the paleotropics postdates the marine extinction. SCIENCE ADVANCES 2024; 10:eadi7284. [PMID: 38295161 PMCID: PMC10830061 DOI: 10.1126/sciadv.adi7284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Accepted: 12/29/2023] [Indexed: 02/02/2024]
Abstract
The end-Permian mass extinction was the most severe ecological event during the Phanerozoic and has long been presumed contemporaneous across terrestrial and marine realms with global environmental deterioration triggered by the Siberian Traps Large Igneous Province. We present high-precision zircon U-Pb geochronology by the chemical abrasion-isotope dilution-thermal ionization mass spectrometry technique on tuffs from terrestrial to transitional coastal settings in Southwest China, which reveals a protracted collapse of the Cathaysian rainforest beginning after the onset of the end-Permian marine extinction. Integrated with high-resolution geochronology from coeval successions, our results suggest that the terrestrial extinction occurred diachronously with latitude, beginning at high latitudes during the late Changhsingian and progressing to the tropics by the early Induan, spanning a duration of nearly 1 million years. This latitudinal age gradient may have been related to variations in surface warming with more degraded environmental conditions at higher latitudes contributing to higher extinction rates.
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Affiliation(s)
- Qiong Wu
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
- State Key Laboratory for Mineral Deposits Research and School of Earth Sciences and Engineering, Nanjing University, Nanjing 210023, China
| | - Hua Zhang
- LPS, Nanjing Institute of Geology and Palaeontology and Center for Excellence in Life and Paleoenvironment, Chinese Academy of Sciences, Nanjing 210008, China
| | - Jahandar Ramezani
- Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Fei-fei Zhang
- State Key Laboratory for Mineral Deposits Research and School of Earth Sciences and Engineering, Nanjing University, Nanjing 210023, China
| | - Douglas H. Erwin
- Department of Paleobiology, MRC-121, National Museum of Natural History, Washington, DC 20013-7012, USA
- Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA
| | - Zhuo Feng
- Institute of Palaeontology, Yunnan Key Laboratory of Earth System Science, Yunnan Key Laboratory for Palaeobiology, MEC International Joint Laboratory for Palaeobiology and Palaeoenvironment, Yunnan University, Kunming 650500, China
- Southwest United Graduate School, Kunming 650092, China
| | - Long-yi Shao
- State Key Laboratory of Coal Resources and Safe Mining and College of Geoscience and Surveying Engineering, China University of Mining and Technology (Beijing), Beijing 100083, China
| | - Yao-feng Cai
- LPS, Nanjing Institute of Geology and Palaeontology and Center for Excellence in Life and Paleoenvironment, Chinese Academy of Sciences, Nanjing 210008, China
| | - Shu-han Zhang
- State Key Laboratory for Mineral Deposits Research and School of Earth Sciences and Engineering, Nanjing University, Nanjing 210023, China
| | - Yi-gang Xu
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
- State Key Laboratory of Isotope Geochemistry and Center of Excellence in Deep Earth Science, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Shu-zhong Shen
- State Key Laboratory for Mineral Deposits Research and School of Earth Sciences and Engineering, Nanjing University, Nanjing 210023, China
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Algeo TJ, Shen J. Theory and classification of mass extinction causation. Natl Sci Rev 2024; 11:nwad237. [PMID: 38116094 PMCID: PMC10727847 DOI: 10.1093/nsr/nwad237] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 09/01/2023] [Accepted: 09/04/2023] [Indexed: 12/21/2023] Open
Abstract
Theory regarding the causation of mass extinctions is in need of systematization, which is the focus of this contribution. Every mass extinction has both an ultimate cause, i.e. the trigger that leads to various climato-environmental changes, and one or more proximate cause(s), i.e. the specific climato-environmental changes that result in elevated biotic mortality. With regard to ultimate causes, strong cases can be made that bolide (i.e. meteor) impacts, large igneous province (LIP) eruptions and bioevolutionary events have each triggered one or more of the Phanerozoic Big Five mass extinctions, and that tectono-oceanic changes have triggered some second-order extinction events. Apart from bolide impacts, other astronomical triggers (e.g. solar flares, gamma bursts and supernova explosions) remain entirely in the realm of speculation. With regard to proximate mechanisms, most extinctions are related to either carbon-release or carbon-burial processes, the former being associated with climatic warming, ocean acidification, reduced marine productivity and lower carbonate δ13C values, and the latter with climatic cooling, increased marine productivity and higher carbonate δ13C values. Environmental parameters such as marine redox conditions and terrestrial weathering intensity do not show consistent relationships with carbon-cycle changes. In this context, mass extinction causation can be usefully classified using a matrix of ultimate and proximate factors. Among the Big Five mass extinctions, the end-Cretaceous biocrisis is an example of a bolide-triggered carbon-release event, the end-Permian and end-Triassic biocrises are examples of LIP-triggered carbon-release events, and the Late Ordovician and Late Devonian biocrises are examples of bioevolution-triggered carbon-burial events. Whereas the bolide-impact and LIP-eruption mechanisms appear to invariably cause carbon release, bioevolutionary triggers can result in variable carbon-cycle changes, e.g. carbon burial during the Late Ordovician and Late Devonian events, carbon release associated with modern anthropogenic climate warming, and little to no carbon-cycle impact due to certain types of ecosystem change (e.g. the advent of the first predators around the end-Ediacaran; the appearance of Paleolithic human hunters in Australasia and the Americas). Broadly speaking, studies of mass extinction causation have suffered from insufficiently critical thinking-an impartial survey of the extant evidence shows that (i) hypotheses of a common ultimate cause (e.g. bolide impacts or LIP eruptions) for all Big Five mass extinctions are suspect given manifest differences in patterns of environmental and biotic change among them; (ii) the Late Ordovician and Late Devonian events were associated with carbon burial and long-term climatic cooling, i.e. changes that are inconsistent with a bolide-impact or LIP-eruption mechanism; and (iii) claims of periodicity in Phanerozoic mass extinctions depended critically on the now-disproven idea that they shared a common extrinsic trigger (i.e. bolide impacts).
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Affiliation(s)
- Thomas J Algeo
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences—Wuhan, Wuhan430074, China
- State Key Laboratory of Geological Processes and Mineral Resources, China University of Geosciences—Wuhan, Wuhan430074, China
- Department of Geosciences, University of Cincinnati, Cincinnati, OH45221, USA
| | - Jun Shen
- State Key Laboratory of Geological Processes and Mineral Resources, China University of Geosciences—Wuhan, Wuhan430074, China
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Saito R, Wörmer L, Taubner H, Kaiho K, Takahashi S, Tian L, Ikeda M, Summons RE, Hinrichs KU. Centennial scale sequences of environmental deterioration preceded the end-Permian mass extinction. Nat Commun 2023; 14:2113. [PMID: 37059714 PMCID: PMC10104797 DOI: 10.1038/s41467-023-37717-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2022] [Accepted: 03/28/2023] [Indexed: 04/16/2023] Open
Abstract
The exact drivers for the end-Permian mass extinction (EPME) remain controversial. Here we focus on a ~10,000 yr record from the marine type section at Meishan, China, preceding and covering the onset of the EPME. Analyses of polyaromatic hydrocarbons at sampling intervals representing 1.5-6.3 yr reveal recurrent pulses of wildfires in the terrestrial realm. Massive input pulses of soil-derived organic matter and clastic materials into the oceans are indicated by patterns of C2-dibenzofuran, C30 hopane and aluminum. Importantly, in the ~2,000 years preceding the main phase of the EPME, we observe a clearly defined sequence of wildfires, soil weathering, and euxinia provoked by the fertilization of the marine environment with soil-derived nutrients. Euxinia is indicated by sulfur and iron concentrations. Our study suggests that, in South China, centennial scale processes led to a collapse of the terrestrial ecosystem ~300 yr (120-480 yr; ± 2 s.d.) before the onset of the EPME and that this collapse induced euxinic conditions in the ocean, ultimately resulting in the demise of marine ecosystems.
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Affiliation(s)
- Ryosuke Saito
- MARUM - Center for Marine Environmental Sciences & Faculty of Geosciences, University of Bremen, 28359, Bremen, Germany.
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, 45 Carleton Street, Cambridge, MA, 02142, USA.
- Graduate School of Sciences and Technology for Innovation, Yamaguchi University, 1677-1 Yoshida, Yamaguchi City, 753-8512, Japan.
- Japan Science and Technology Agency, PRESTO, 4-1-8 Honcho, Kawaguchi, Saitama, 332-0012, Japan.
| | - Lars Wörmer
- MARUM - Center for Marine Environmental Sciences & Faculty of Geosciences, University of Bremen, 28359, Bremen, Germany
| | - Heidi Taubner
- MARUM - Center for Marine Environmental Sciences & Faculty of Geosciences, University of Bremen, 28359, Bremen, Germany
| | - Kunio Kaiho
- Department of Earth Science, Tohoku University, Sendai, 980-8578, Japan
| | - Satoshi Takahashi
- Department of Earth and Environmental Sciences, Graduate School of Environmental Studies, Nagoya University, Nagoya, 464-8601, Japan
| | - Li Tian
- The Key Laboratory of Biogeology and Environmental Geology and Faculty of Earth Science, China University of Geosciences Wuhan, Wuhan, 430074, China
| | - Masayuki Ikeda
- Department of Earth and Planetary Science, University of Tokyo, Bunkyo, 113-0033, Japan
| | - Roger E Summons
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, 45 Carleton Street, Cambridge, MA, 02142, USA
| | - Kai-Uwe Hinrichs
- MARUM - Center for Marine Environmental Sciences & Faculty of Geosciences, University of Bremen, 28359, Bremen, Germany
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