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Palma-Espinosa J, Orellana-Villota S, Coronel-Oliveros C, Maidana JP, Orio P. The balance between integration and segregation drives network dynamics maximizing multistability and metastability. Sci Rep 2025; 15:18811. [PMID: 40442139 PMCID: PMC12122676 DOI: 10.1038/s41598-025-01612-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2025] [Accepted: 05/07/2025] [Indexed: 06/02/2025] Open
Abstract
The brain's ability to switch between functional states while maintaining both flexibility and stability is shaped by its structural connectivity. Understanding the relationship between brain structure and neural dynamics is a central challenge in neuroscience. Prior studies link neural dynamics to local noisy activity and mesoscale coupling mechanisms, but causal links at the whole-brain scale remain elusive. This study investigates how the balance between integration and segregation in brain networks influences their dynamical properties, focusing on multistability (switching between stable states) and metastability (transient stability over time). We analyzed a spectrum of network models, from highly segregated to highly integrated, using structural metrics like modularity, efficiency, and small-worldness. By simulating neural activity with a neural mass model, and analyzing Functional Connectivity Dynamics (FCD), we found that segregated networks sustain dynamic synchronization patterns, while small-world networks, which balance local clustering and global efficiency, exhibit the richest dynamical behavior. Networks with intermediate small-worldness (ω) values showed peak dynamical richness, measured by variance in FCD and metastability. Using Mutual Information (MI), we quantified the structure-dynamics relationship, revealing that modularity is the strongest predictor of network dynamics, as modular architectures support transitions between dynamical states. These findings underscore the importance of the balance between local specialization, global integration, and network's modularity, which fosters the dynamic complexity necessary for cognitive functions. Our study enhances the understanding of how structural features shape neural dynamics.
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Affiliation(s)
| | | | - Carlos Coronel-Oliveros
- Latin American Brain Health Institute (BrainLat), Universidad Adolfo Ibañez, Santiago de Chile, Chile
- Trinity College Dublin, The University of Dublin, Dublin, Ireland
- Global Brain Health Institute (GBHI), University of California, San Francisco, USA
| | - Jean Paul Maidana
- Facultad de Ingeniería, Universidad Andres Bello, Quillota 980, Viña del Mar, 2520000, Chile
- Instituto de Tecnología e Innovación para la Salud y Bienestar, Facultad de Ingeniería, Universidad Andrés Bello, Viña del Mar, 2531015, Chile
| | - Patricio Orio
- Instituto de Neurociencia, Facultad de Ciencias, Universidad de Valparaíso, Valparaíso, Chile.
- Centro Interdisciplinario de Neurociencia de Valparaíso, Valparaíso, Chile.
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El-Yaagoubi AB, Aslan S, Gomawi F, Redondo PV, Roy S, Sultan MS, Talento MS, Tarrazona FT, Wu H, Cooper KW, Fortin NJ, Ombao H. Methods for Brain Connectivity Analysis with Applications to Rat Local Field Potential Recordings. ENTROPY (BASEL, SWITZERLAND) 2025; 27:328. [PMID: 40282562 PMCID: PMC12025641 DOI: 10.3390/e27040328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2025] [Revised: 03/10/2025] [Accepted: 03/17/2025] [Indexed: 04/29/2025]
Abstract
Modeling the brain dependence network is central to understanding underlying neural mechanisms such as perception, action, and memory. In this study, we present a broad range of statistical methods for analyzing dependence in a brain network. Leveraging a combination of classical and cutting-edge approaches, we analyze multivariate hippocampal local field potential (LFP) time series data concentrating on the encoding of nonspatial olfactory information in rats. We present the strengths and limitations of each method in capturing neural dynamics and connectivity. Our analysis begins with exploratory techniques, including correlation, partial correlation, spectral matrices, and coherence, to establish foundational connectivity insights. We then investigate advanced methods such as Granger causality (GC), robust canonical coherence analysis, spectral transfer entropy (STE), and wavelet coherence to capture dynamic and nonlinear interactions. Additionally, we investigate the utility of topological data analysis (TDA) to extract multi-scale topological features and explore deep learning-based canonical correlation frameworks for connectivity modeling. This comprehensive approach offers an introduction to the state-of-the-art techniques for the analysis of dependence networks, emphasizing the unique strengths of various methodologies, addressing computational challenges, and paving the way for future research.
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Affiliation(s)
- Anass B. El-Yaagoubi
- Statistics Program, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia
| | - Sipan Aslan
- Statistics Program, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia
| | - Farah Gomawi
- Statistics Program, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia
| | - Paolo V. Redondo
- Statistics Program, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia
| | - Sarbojit Roy
- Statistics Program, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia
| | - Malik S. Sultan
- Statistics Program, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia
| | - Mara S. Talento
- Statistics Program, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia
| | - Francine T. Tarrazona
- Statistics Program, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia
- Department of Mathematics, Ateneo de Manila University, Quezon City 1108, Philippines
| | - Haibo Wu
- Statistics Program, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia
| | - Keiland W. Cooper
- Department of Neurobiology and Behavior, University of California, Irvine, CA 92697, USA
| | - Norbert J. Fortin
- Department of Neurobiology and Behavior, University of California, Irvine, CA 92697, USA
| | - Hernando Ombao
- Statistics Program, King Abdullah University of Science and Technology (KAUST), Thuwal 23955, Saudi Arabia
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Chung MK, El-Yaagoubi AB, Qiu A, Ombao H. From Density to Void: Why Brain Networks Fail to Reveal Complex Higher-Order Structures. ARXIV 2025:arXiv:2503.14700v1. [PMID: 40166738 PMCID: PMC11957234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 04/02/2025]
Abstract
In brain network analysis using resting-state fMRI, there is growing interest in modeling higher-order interactions beyond simple pairwise connectivity via persistent homology. Despite the promise of these advanced topological tools, robust and consistently observed higher-order interactions over time remain elusive. In this study, we investigate why conventional analyses often fail to reveal complex higher-order structures-such as interactions involving four or more nodes-and explore whether such interactions truly exist in functional brain networks. We utilize a simplicial complex framework often used in persistent homology to address this question.
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Affiliation(s)
- Moo K Chung
- Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, USA
| | - Anass B El-Yaagoubi
- Statistics Program, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Anqi Qiu
- Department of Health Technology and Informatics, Hong Kong, China
| | - Hernando Ombao
- Statistics Program, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
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Li X, Pal PK, Lei Y, Ghosh D, Small M. Higher-order interactions induce stepwise explosive phase transitions. Phys Rev E 2025; 111:024303. [PMID: 40103088 DOI: 10.1103/physreve.111.024303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2024] [Accepted: 01/17/2025] [Indexed: 03/20/2025]
Abstract
In recent studies, it has been established that higher-order interactions in coupled oscillators can induce a process from continuous to explosive phase transition. In this study, we identify a phase transition, termed the stepwise explosive phase transition, characterized by the emergence of multiple critical phase plateaus in a globally frequency-weighted coupled pendulum model. This transition bridges the continuous and explosive phase transitions, arising from a delicate balance between attractive higher-order interactions and repulsive pairwise interactions. Specifically, the stepwise explosive phase transition occurs when the higher-order coupling is moderate, neither large nor small, while the pairwise interactions remain repulsive. Our analysis shows that stronger attractive higher-order interactions necessitate weaker repulsive pairwise interactions, leading to partial frequency locking among oscillators and triggering the stepwise transition. We construct an analytical framework using self-consistent equations to provide an approximation of the steady-state behavior. This study uncovers an alternative pathway to the desynchronization, and it provides additional insights into the phase transitions in coupled dynamical networks.
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Affiliation(s)
- Xueqi Li
- Northwestern Polytechnical University, School of Mathematics and Statistics, Xi'an 710072, China
| | - Palash Kumar Pal
- Indian Statistical Institute, Physics and Applied Mathematics Unit, 203 B. T. Road, Kolkata 700108, India
| | - Youming Lei
- Northwestern Polytechnical University, School of Mathematics and Statistics, Xi'an 710072, China
- Northwestern Polytechnical University, Ministry of Industry and Information Technology Key Laboratory of Dynamics and Control of Complex Systems, Xi'an 710072, China
| | - Dibakar Ghosh
- Indian Statistical Institute, Physics and Applied Mathematics Unit, 203 B. T. Road, Kolkata 700108, India
| | - Michael Small
- University of Western Australia, Complex Systems Group, Department of Mathematics and Statistics, The , Crawley WA 6009, Australia
- Mineral Resources, CSIRO, Kensington WA 6151, Australia
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