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Du Z, Wang X, Duan Y, Liu S, Tian L, Song F, Cai W, Li H. Global Invasion History and Genomic Signatures of Adaptation of the Highly Invasive Sycamore Lace Bug. GENOMICS, PROTEOMICS & BIOINFORMATICS 2025; 22:qzae074. [PMID: 39400548 PMCID: PMC11993305 DOI: 10.1093/gpbjnl/qzae074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Revised: 10/04/2024] [Accepted: 10/08/2024] [Indexed: 10/15/2024]
Abstract
Invasive species cause massive economic and ecological damages. Climate change has resulted in an unprecedented increase in the number and impact of invasive species; however, the mechanisms underlying these invasions are unclear. The sycamore lace bug, Corythucha ciliata, is a highly invasive species originating from North America and has expanded across the Northern Hemisphere since the 1960s. In this study, we assembled the C. ciliata genome using high-coverage Pacific Biosciences (PacBio), Illumina, and high-throughput chromosome conformation capture (Hi-C) sequencing. A total of 15,278 protein-coding genes were identified, and expansions of gene families with oxidoreductase and metabolic activities were observed. In-depth resequencing of 402 samples from native and nine invaded countries across three continents revealed 2.74 million single nucleotide polymorphisms. Two major invasion routes of C. ciliata were identified from North America to Europe and Japan, with a contact zone forming in East Asia. Genomic signatures of selection associated with invasion and long-term balancing selection in native ranges were identified. These genomic signatures overlapped with each other as well as with expanded genes, suggesting improvements in the oxidative stress and thermal tolerance of C. ciliata. These findings offer valuable insights into the genomic architecture and adaptive evolution underlying the invasive capabilities of species during rapid environmental changes.
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Affiliation(s)
- Zhenyong Du
- Department of Entomology and MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Xuan Wang
- Department of Entomology and MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Yuange Duan
- Department of Entomology and MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Shanlin Liu
- Department of Entomology and MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Li Tian
- Department of Entomology and MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Fan Song
- Department of Entomology and MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Wanzhi Cai
- Department of Entomology and MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing 100193, China
| | - Hu Li
- Department of Entomology and MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing 100193, China
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Leung K, Beukeboom LW, Zwaan BJ. Inbreeding and Outbreeding Depression in Wild and Captive Insect Populations. ANNUAL REVIEW OF ENTOMOLOGY 2025; 70:271-292. [PMID: 39874143 DOI: 10.1146/annurev-ento-022924-020221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2025]
Abstract
Major changes in genetic variation are generally considered deleterious to populations. The massive biodiversity of insects distinguishes them from other animal groups. Insect deviant effective population sizes, alternative modes of reproduction, advantageous inbreeding, endosymbionts, and other factors translate to highly specific inbreeding and outbreeding outcomes. We review the evidence for inbreeding and outbreeding depression and consequences across wild and captive insect populations, highlighting conservation, invasion, and commercial production entomology. We not only discern patterns but also explain why they are often inconsistent or absent. We discuss how insect inbreeding and outbreeding depression operates in complex, sometimes contradictory directions, such as inbreeding being detrimental to individuals but beneficial to populations. We conclude by giving recommendations to (a) more comprehensively account for important variables in insect inbreeding and outbreeding depression, (b) standardize the means of measuring genetic variation and phenotypic impacts for insect populations so as to more reliably predict when inbreeding or outbreeding depression applies, and (c) outline possible remediation options, both nongenetic and genetic, including revision of restrictive international trade laws.
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Affiliation(s)
- Kelley Leung
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands;
- Laboratory of Genetics, Wageningen University & Research, Wageningen, The Netherlands
| | - Leo W Beukeboom
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands;
| | - Bas J Zwaan
- Laboratory of Genetics, Wageningen University & Research, Wageningen, The Netherlands
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Ren X, Wang K, Zhang G, Chen S, Cheng Y. Anisotropic Wetting and Diffusion Behavior of Water Droplets on Biphenylene Compared to Graphene. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:26267-26273. [PMID: 39615053 DOI: 10.1021/acs.langmuir.4c03840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2024]
Abstract
We comparatively studied the wetting behavior of water droplets on graphene and biphenylene using molecular dynamics simulations. The research showed that pristine biphenylene (BPN), unlike graphene, exhibits greater hydrophobicity and anisotropic wettability. This specific anisotropy can be tuned by the layer number and vacancy concentration. Particularly, there was a decrease in the water contact angle with increasing BPN layer number, highlighting the importance of water-BPN interactions. As the concentration of vacancies increases, the contact angle increases both along the zigzag direction and the armchair direction, while the anisotropy decreases. In planar defective biphenylene heterojunctions, water droplets spontaneously move from the defective area to the pristine area, where the zigzag direction exhibits a larger energy gradient compared to the armchair direction, leading to a faster movement of water droplets in the zigzag direction. The energy factor plays an important role in the directional movement of the water droplets. Our study explores new 2D materials with strong hydrophobicity and highlights the direction-dependent wetting behavior of biphenylene.
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Affiliation(s)
- Xiaoqiong Ren
- Monash Suzhou Research Institute, Monash University, SIP, Suzhou 215000, China
- Department of Materials Science and Engineering, Monash University, Clayton, VIC 3800, Australia
| | - Ke Wang
- Monash Suzhou Research Institute, Monash University, SIP, Suzhou 215000, China
- School of Automation, Xi'an University of Posts & Telecommunications, Shaanxi 710121, China
| | - Gang Zhang
- Yangtze Delta Region Academy of Beijing Institute of Technology, Jiaxing 314019, China
| | - Shuai Chen
- Materials Genome Institute, Shanghai University, Shanghai 200444, China
- Shanghai Frontier Science Center of Mechanoinformatics, Shanghai University, Shanghai 200444, China
| | - Yuan Cheng
- Monash Suzhou Research Institute, Monash University, SIP, Suzhou 215000, China
- Department of Materials Science and Engineering, Monash University, Clayton, VIC 3800, Australia
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Hagan T, Ding G, Buchmann G, Oldroyd BP, Gloag R. Serial founder effects slow range expansion in an invasive social insect. Nat Commun 2024; 15:3608. [PMID: 38684711 PMCID: PMC11058855 DOI: 10.1038/s41467-024-47894-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Accepted: 04/10/2024] [Indexed: 05/02/2024] Open
Abstract
Invasive populations often experience founder effects: a loss of genetic diversity relative to the source population, due to a small number of founders. Even where these founder effects do not impact colonization success, theory predicts they might affect the rate at which invasive populations expand. This is because secondary founder effects are generated at advancing population edges, further reducing local genetic diversity and elevating genetic load. We show that in an expanding invasive population of the Asian honey bee (Apis cerana), genetic diversity is indeed lowest at range edges, including at the complementary sex determiner, csd, a locus that is homozygous-lethal. Consistent with lower local csd diversity, range edge colonies had lower brood viability than colonies in the range centre. Further, simulations of a newly-founded and expanding honey bee population corroborate the spatial patterns in mean colony fitness observed in our empirical data and show that such genetic load at range edges will slow the rate of population expansion.
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Affiliation(s)
- Thomas Hagan
- Behaviour, Ecology and Evolution Lab, School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia.
| | - Guiling Ding
- Behaviour, Ecology and Evolution Lab, School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia
- Key Laboratory of Pollinating Insect Biology of the Ministry of Agriculture and Rural Affairs, Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing, 100093, China
| | - Gabriele Buchmann
- Behaviour, Ecology and Evolution Lab, School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia
| | - Benjamin P Oldroyd
- Behaviour, Ecology and Evolution Lab, School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia
| | - Rosalyn Gloag
- Behaviour, Ecology and Evolution Lab, School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia.
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Otis GW, Taylor BA, Mattila HR. Invasion potential of hornets (Hymenoptera: Vespidae: Vespa spp.). FRONTIERS IN INSECT SCIENCE 2023; 3:1145158. [PMID: 38469472 PMCID: PMC10926419 DOI: 10.3389/finsc.2023.1145158] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Accepted: 03/30/2023] [Indexed: 03/13/2024]
Abstract
Hornets are large, predatory wasps that have the potential to alter biotic communities and harm honey bee colonies once established in non-native locations. Mated, diapausing females (gynes) can easily be transported to new habitats, where their behavioral flexibility allows them to found colonies using local food and nest materials. Of the 22 species in the genus Vespa, five species are now naturalized far from their endemic populations and another four have been detected either in nature or during inspections at borders of other countries. By far the most likely pathway of long-distance dispersal is the transport of gynes in transoceanic shipments of goods. Thereafter, natural dispersal of gynes in spring and accidental local transport by humans cause shorter-range expansions and contribute to the invasion process. Propagule pressure of hornets is unquantified, although it is likely low but unrelenting. The success of introduced populations is limited by low propagule size and the consequences of genetic founder effects, including the extinction vortex linked to single-locus, complementary sex determination of most hymenopterans. Invasion success is enhanced by climatic similarity between source locality and introduction site, as well as genetic diversity conferred by polyandry in some species. These and other factors that may have influenced the successful establishment of invasive populations of V. velutina, V. tropica, V. bicolor, V. orientalis, and V. crabro are discussed. The highly publicized detections of V. mandarinia in North America and research into its status provide a real-time example of an unfolding hornet invasion.
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Affiliation(s)
- Gard W. Otis
- School of Environmental Sciences, University of Guelph, Guelph, ON, Canada
- Institute of Bee Health, Vetsuisse Faculty, University of Bern and Agroscope, Bern, Switzerland
| | - Benjamin A. Taylor
- Department of Entomology, Purdue University, West Lafayette, IN, United States
| | - Heather R. Mattila
- Department of Biological Sciences, Wellesley College, Wellesley, MA, United States
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Hagan T, Lim J, Gloag R. Drones Do Not Drift between Nests in a Wild Population of Apis cerana. INSECTS 2023; 14:323. [PMID: 37103138 PMCID: PMC10145114 DOI: 10.3390/insects14040323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 03/15/2023] [Accepted: 03/22/2023] [Indexed: 06/19/2023]
Abstract
The modes through which individuals disperse prior to reproduction has important consequences for gene flow in populations. In honey bees (Apis sp.), drones (males) reproduce within a short flight range of their natal nest, leaving and returning each afternoon within a narrow mating window. Drones are assumed to return to their natal nests as they depend on workers to feed them. However, in apiaries, drones are reported to regularly make navigation errors and return to a non-natal nest, where they are accepted and fed by unrelated workers. If such a "drone drift" occurred in wild populations, it could facilitate some further degree of dispersal for males, particularly if drones drift into host nests some distance away from their natal nest. Here, we investigated whether drone drift occurs in an invasive population of the Asian honey bee (Apis cerana). Based on the genotypes of 1462 drones from 19 colonies, we found only a single drone that could be considered a candidate drifter (~0.07%). In three other colonies, drones whose genotypes differed from the inferred queen were best explained by recent queen turnover or worker-laying. We concluded that drone drift in this population is low at best, and A. cerana drones either rarely make navigation errors in wild populations or are not accepted into foreign nests when they do so. We therefore confirm that drone dispersal distance is limited to the distance of daily drone flights from natal nests, a key assumption of both colony density estimates based on sampling of drone congregation areas and population genetic models of gene flow in honey bees.
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Population Structure and Genetic Diversity of Chinese Honeybee (Apis Cerana Cerana) in Central China. Genes (Basel) 2022; 13:genes13061007. [PMID: 35741769 PMCID: PMC9222672 DOI: 10.3390/genes13061007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Revised: 05/26/2022] [Accepted: 05/30/2022] [Indexed: 12/22/2022] Open
Abstract
Central China has a rich terrain with a temperate monsoon climate and varied natural environments for the Chinese honeybee (Apis cerana cerana). However, little comprehensive research on population genetic diversity has been done in this area. A population survey of the structure and genetic diversity of Apis cerana cerana in this area is deeply needed for understanding adaptation to variable environments and providing more references for the protection of honeybee biodiversity. In this study, we present a dataset of 72 populations of Chinese honeybees collected from nine sites by whole genome sequencing in Central China. We obtained 2,790,214,878 clean reads with an average covering a depth of 22×. A total of 27,361,052 single nucleotide polymorphisms (SNPs) were obtained by mapping to the reference genome with an average mapping rate of 93.03%. Genetic evolution analysis was presented via the population structure and genetic diversity based on the datasets of SNPs. It showed that Apis cerana cerana in plains exhibited higher genetic diversity than in mountain areas. The mantel test between Apis cerana cerana groups revealed that some physical obstacles, especially the overurbanization of the plains, contributed to the differentiation. This study is conducive to elucidating the evolution of Apis cerana in different environments and provides a theoretical basis for investigating and protecting the Chinese honeybee.
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Panziera D, Requier F, Chantawannakul P, Pirk CWW, Blacquière T. The Diversity Decline in Wild and Managed Honey Bee Populations Urges for an Integrated Conservation Approach. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.767950] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
Abstract
Many parts of the globe experience severe losses and fragmentation of habitats, affecting the self-sustainability of pollinator populations. A number of bee species coexist as wild and managed populations. Using honey bees as an example, we argue that several management practices in beekeeping threaten genetic diversity in both wild and managed populations, and drive population decline. Large-scale movement of hive stocks, introductions into new areas, breeding programs and trading of queens contribute to reducing genetic diversity, as recent research demonstrated for wild and managed honey bees within a few decades. Examples of the effects of domestication in other organisms show losses of both genetic diversity and fitness functions. Cases of natural selection and feralization resulted in maintenance of a higher genetic diversity, including in a Varroa destructor surviving population of honey bees. To protect the genetic diversity of honey bee populations, exchange between regions should be avoided. The proposed solution to selectively breed all local subspecies for a use in beekeeping would reduce the genetic diversity of each, and not address the value of the genetic diversity present in hybridized populations. The protection of Apis mellifera’s, Apis cerana’s and Apis koschevnikovi’s genetic diversities could be based on natural selection. In beekeeping, it implies to not selectively breed but to leave the choice of the next generation of queens to the colonies, as in nature. Wild populations surrounded by beekeeping activity could be preserved by allowing Darwinian beekeeping in a buffer zone between the wild and regular beekeeping area.
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Geometric morphology and population genomics provide insights into the adaptive evolution of Apis cerana in Changbai Mountain. BMC Genomics 2022; 23:64. [PMID: 35045823 PMCID: PMC8772121 DOI: 10.1186/s12864-022-08298-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Accepted: 01/07/2022] [Indexed: 01/27/2023] Open
Abstract
Abstract
Background
Exploration of adaptive evolution of organisms in response to environmental change can help to understand the evolutionary history of species and the underlying mechanisms of adaptation to local environments, thus guiding future conservation programmes. Before the introduction of Apis mellifera in China, eastern honey bees (Apis cerana) were the only species used for beekeeping in this region. In the mountains of Changbai, populations of A. cerana are considered a distinct ecotype of the species which formed through the distinct selective pressures in this area over time.
Result
We performed a measure of 300 wing specimens of eastern honey bees and obtained the geometric morphological variation in the wing of A. cerana in Changbai Mountain. A total of 3,859,573 high-quality SNP loci were yielded via the whole-genome resequencing of 130 individuals in 5 geographic regions.
Conclusion
Corresponding geometric morphology and population genomics confirmed the particularity of the A. cerana in Changbai Mountain. Genetic differentiation at the subspecies level exists between populations in Changbai Mountain and remaining geographic regions, and a significant reduction in the effective population size and an excessive degree of inbreeding may be responsible for a substantial loss of population genetic diversity. Candidate genes potentially associated with cold environmental adaptations in populations under natural selection were identified, which may represent local adaptations in populations. Our study provided insights into the evolutionary history and adaptation of A. cerana in Changbai Mountain, as well as its conservation.
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10
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Eyer PA, Vargo EL. Breeding structure and invasiveness in social insects. CURRENT OPINION IN INSECT SCIENCE 2021; 46:24-30. [PMID: 33549724 DOI: 10.1016/j.cois.2021.01.004] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Revised: 01/15/2021] [Accepted: 01/22/2021] [Indexed: 06/12/2023]
Abstract
Plasticity in life history traits is commonly used to explain the invasion success of social insects. While intraspecific plasticity is often recognized, interspecific variability is easily overlooked, whereby different species exhibit different strategies. The presence of many queens per colony and the collapse of colony boundaries have favored invasiveness for many ant species. However, these strategies are absent from other successful social invaders. Here, we report that various life-history traits may differentially enhance the invasion success in social insects. We suggest that other aspects of their breeding system, like asexual reproduction, intranidal mating and pre-adaptation to inbreeding may enhance their invasion success. Thorough comparative studies between native and introduced populations or studies of closely related species will help identify additional traits favoring the invasion success of social insects, and ultimately provide a more comprehensive picture of the evolutionary factors enhancing invasiveness across this phylogenetically and ecologically diverse group.
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Affiliation(s)
- Pierre-André Eyer
- Department of Entomology, 2143 TAMU, Texas A&M University, College Station, TX, 77843-2143, USA.
| | - Edward L Vargo
- Department of Entomology, 2143 TAMU, Texas A&M University, College Station, TX, 77843-2143, USA
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11
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Hagan T, Gloag R. Founder effects on sex determination systems in invasive social insects. CURRENT OPINION IN INSECT SCIENCE 2021; 46:31-38. [PMID: 33610774 DOI: 10.1016/j.cois.2021.02.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2020] [Revised: 02/04/2021] [Accepted: 02/08/2021] [Indexed: 06/12/2023]
Abstract
Invasive populations are often established from a small number of individuals, and thus have low genetic diversity relative to native-range populations. Social ants, bees and wasps (social Hymenoptera) should be vulnerable to such founder effects on genetic diversity because sex in these species is determined genetically via Complementary Sex Determination (CSD). Under CSD, individuals homozygous at one or more critical sex loci are inviable or develop as infertile diploid males. Low diversity at sex loci leads to increased homozygosity and diploid male production, increasing the chance of colony death. In this review, we identify behavioral, social and reproductive traits that preserve allele richness at sex loci, allow colonies to cope with diploid male production, and eventually restore sex allele diversity in invasive populations of social Hymenoptera that experience founding bottlenecks.
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Affiliation(s)
- Thomas Hagan
- Behaviour, Ecology and Evolution Lab, School of Life and Environmental Sciences, University of Sydney, NSW 2006, Australia
| | - Rosalyn Gloag
- Behaviour, Ecology and Evolution Lab, School of Life and Environmental Sciences, University of Sydney, NSW 2006, Australia.
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12
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Díaz SS, Carisio L, Manino A, Biella P, Porporato M. Nesting, Sex Ratio and Natural Enemies of the Giant Resin Bee in Relation to Native Species in Europe. INSECTS 2021; 12:545. [PMID: 34208066 PMCID: PMC8230627 DOI: 10.3390/insects12060545] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2021] [Revised: 05/31/2021] [Accepted: 06/01/2021] [Indexed: 11/16/2022]
Abstract
Megachile sculpturalis (Smith, 1853) is the first exotic bee species in Europe. Its remarkably fast expansion across this continent is leading to a growing concern on the extent of negative impacts to the native fauna. To evaluate the interactions of exotic bees with local wild bees, we set up trap nests for above-ground nesting bees on a semi-urban area of north-western Italy. We aimed to investigate the interaction in artificial traps between the exotic and native wild bees and to assess offspring traits accounting for exotic bee fitness: progeny sex ratio and incidence of natural enemies. We found that the tunnels occupied by exotic bees were already cohabited by O. cornuta, and thus the cells of later nesting alien bees may block the native bee emergence for the next year. The progeny sex ratio of M. sculpturalis was strongly unbalanced toward males, indicating a temporary adverse population trend in the local invaded area. In addition, we documented the presence of three native natural enemies affecting the brood of the exotic bee. Our results bring out new insights on how the M. sculpturalis indirectly competes with native species and on its performance in new locations.
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Affiliation(s)
- Sara Straffon Díaz
- Department of Agricultural Forest and Food Sciences, University of Turin, Largo Paolo Braccini 2, 10095 Grugliasco (Turin), Italy; (L.C.); (A.M.); (M.P.)
| | - Luca Carisio
- Department of Agricultural Forest and Food Sciences, University of Turin, Largo Paolo Braccini 2, 10095 Grugliasco (Turin), Italy; (L.C.); (A.M.); (M.P.)
| | - Aulo Manino
- Department of Agricultural Forest and Food Sciences, University of Turin, Largo Paolo Braccini 2, 10095 Grugliasco (Turin), Italy; (L.C.); (A.M.); (M.P.)
| | - Paolo Biella
- Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza 2, 20126 Milano, Italy;
| | - Marco Porporato
- Department of Agricultural Forest and Food Sciences, University of Turin, Largo Paolo Braccini 2, 10095 Grugliasco (Turin), Italy; (L.C.); (A.M.); (M.P.)
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Brock RE, Crowther LP, Wright DJ, Richardson DS, Carvell C, Taylor MI, Bourke AFG. No severe genetic bottleneck in a rapidly range-expanding bumblebee pollinator. Proc Biol Sci 2021; 288:20202639. [PMID: 33563116 PMCID: PMC7893223 DOI: 10.1098/rspb.2020.2639] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
Abstract
Genetic bottlenecks can limit the success of populations colonizing new ranges. However, successful colonizations can occur despite bottlenecks, a phenomenon known as the genetic paradox of invasion. Eusocial Hymenoptera such as bumblebees (Bombus spp.) should be particularly vulnerable to genetic bottlenecks, since homozygosity at the sex-determining locus leads to costly diploid male production (DMP). The Tree Bumblebee (Bombus hypnorum) has rapidly colonized the UK since 2001 and has been highlighted as exemplifying the genetic paradox of invasion. Using microsatellite genotyping, combined with the first genetic estimates of DMP in UK B. hypnorum, we tested two alternative genetic hypotheses ('bottleneck' and 'gene flow' hypotheses) for B. hypnorum's colonization of the UK. We found that the UK population has not undergone a recent severe genetic bottleneck and exhibits levels of genetic diversity falling between those of widespread and range-restricted Bombus species. Diploid males occurred in 15.4% of reared colonies, leading to an estimate of 21.5 alleles at the sex-determining locus. Overall, the findings show that this population is not bottlenecked, instead suggesting that it is experiencing continued gene flow from the continental European source population with only moderate loss of genetic diversity, and does not exemplify the genetic paradox of invasion.
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Affiliation(s)
- Ryan E Brock
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, Norfolk NR4 7TJ, UK
| | - Liam P Crowther
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, Norfolk NR4 7TJ, UK
| | - David J Wright
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, Norfolk NR4 7TJ, UK.,Earlham Institute, Norwich Research Park, Colney Lane, Norwich, Norfolk NR4 7UZ, UK
| | - David S Richardson
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, Norfolk NR4 7TJ, UK
| | - Claire Carvell
- UK Centre for Ecology and Hydrology, Maclean Building, Crowmarsh Gifford, Wallingford, Oxfordshire OX10 8BB, UK
| | - Martin I Taylor
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, Norfolk NR4 7TJ, UK
| | - Andrew F G Bourke
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, Norfolk NR4 7TJ, UK
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14
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Lanner J, Gstöttenmayer F, Curto M, Geslin B, Huchler K, Orr MC, Pachinger B, Sedivy C, Meimberg H. Evidence for multiple introductions of an invasive wild bee species currently under rapid range expansion in Europe. BMC Ecol Evol 2021; 21:17. [PMID: 33546597 PMCID: PMC7866639 DOI: 10.1186/s12862-020-01729-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Accepted: 11/30/2020] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Invasive species are increasingly driving biodiversity decline, and knowledge of colonization dynamics, including both drivers and dispersal modes, are important to prevent future invasions. The bee species Megachile sculpturalis (Hymenoptera: Megachilidae), native to East-Asia, was first recognized in Southeast-France in 2008, and has since spread throughout much of Europe. The spread is very fast, and colonization may result from multiple fronts. RESULT To track the history of this invasion, codominant markers were genotyped using Illumina sequencing and the invasion history and degree of connectivity between populations across the European invasion axis were investigated. Distinctive genetic clusters were detected with east-west differentiations in Middle-Europe. CONCLUSION We hypothesize that the observed cluster formation resulted from multiple, independent introductions of the species to the European continent. This study draws a first picture of an early invasion stage of this wild bee and forms a foundation for further investigations, including studies of the species in their native Asian range and in the invaded range in North America.
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Affiliation(s)
- Julia Lanner
- Institute for Integrative Nature Conservation Research, University of Natural Resources and Life Sciences Vienna (BOKU), Gregor-Mendel-Straße 33, 1180, Vienna, Austria.
| | - Fabian Gstöttenmayer
- Insect Pest Control Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food & Agriculture, Wagramer Straße 5, 1400, Vienna, Austria
| | - Manuel Curto
- Institute for Integrative Nature Conservation Research, University of Natural Resources and Life Sciences Vienna (BOKU), Gregor-Mendel-Straße 33, 1180, Vienna, Austria.,MARE Marine and Environmental Sciences Centre, Faculdade de Ciências, Universidade de Lisboa, Camop Grande, 1749-016, Lisboa, Portugal
| | - Benoît Geslin
- IMBE, Aix Marseille Université, Avignon Université, CNRS, Marseille, France
| | - Katharina Huchler
- Institute for Integrative Nature Conservation Research, University of Natural Resources and Life Sciences Vienna (BOKU), Gregor-Mendel-Straße 33, 1180, Vienna, Austria
| | - Michael C Orr
- Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, 1 Beichen West Road, Beijing, 100101, China
| | - Bärbel Pachinger
- Institute for Integrative Nature Conservation Research, University of Natural Resources and Life Sciences Vienna (BOKU), Gregor-Mendel-Straße 33, 1180, Vienna, Austria
| | | | - Harald Meimberg
- Institute for Integrative Nature Conservation Research, University of Natural Resources and Life Sciences Vienna (BOKU), Gregor-Mendel-Straße 33, 1180, Vienna, Austria
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15
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Saelao P, Simone-Finstrom M, Avalos A, Bilodeau L, Danka R, de Guzman L, Rinkevich F, Tokarz P. Genome-wide patterns of differentiation within and among U.S. commercial honey bee stocks. BMC Genomics 2020; 21:704. [PMID: 33032523 PMCID: PMC7545854 DOI: 10.1186/s12864-020-07111-x] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Accepted: 09/29/2020] [Indexed: 12/30/2022] Open
Abstract
BACKGROUND The population genetics of U.S. honey bee stocks remain poorly characterized despite the agricultural importance of Apis mellifera as the major crop pollinator. Commercial and research-based breeding programs have made significant improvements of favorable genetic traits (e.g. production and disease resistance). The variety of bees produced by artificial selection provides an opportunity to characterize the genetic diversity and regions of the genome undergoing selection in commonly managed stocks. RESULTS Pooled sequencing of eight honey bee stocks found strong genetic similarity among six of the stocks. Two stocks, Pol-line and Hilo, showed significant differentiation likely due to their intense and largely closed breeding for resistance to the parasitic Varroa mite. Few variants were identified as being specific to any one stock, indicating potential admixture among the sequenced stocks. Juxtaposing the underlying genetic variation of stocks selected for disease- and parasite-resistance behavior, we identified genes and candidate regions putatively associated with resistance regulated by hygienic behavior. CONCLUSION This study provides important insights into the distinct genetic characteristics and population diversity of honey bee stocks used in the United States, and provides further evidence of high levels of admixture in commercially managed honey bee stocks. Furthermore, breeding efforts to enhance parasite resistance in honey bees may have created unique genetic profiles. Genomic regions of interest have been highlighted for potential future work related to developing genetic markers for selection of disease and parasite resistance traits. Due to the vast genomic similarities found among stocks in general, our findings suggest that additional data regarding gene expression, epigenetic and regulatory information are needed to more fully determine how stock phenotypic diversity is regulated.
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Affiliation(s)
- Perot Saelao
- USDA-ARS, Honey Bee Breeding, Genetics and Physiology Laboratory, Baton Rouge, LA 70820 USA
- Present Address: USDA-ARS Knipling-Bushland U.S. Livestock Arthropod Pests Research Unit, Kerrville, TX 78028 USA
| | | | - Arian Avalos
- USDA-ARS, Honey Bee Breeding, Genetics and Physiology Laboratory, Baton Rouge, LA 70820 USA
| | - Lelania Bilodeau
- USDA-ARS, Honey Bee Breeding, Genetics and Physiology Laboratory, Baton Rouge, LA 70820 USA
| | - Robert Danka
- USDA-ARS, Honey Bee Breeding, Genetics and Physiology Laboratory, Baton Rouge, LA 70820 USA
| | - Lilia de Guzman
- USDA-ARS, Honey Bee Breeding, Genetics and Physiology Laboratory, Baton Rouge, LA 70820 USA
| | - Frank Rinkevich
- USDA-ARS, Honey Bee Breeding, Genetics and Physiology Laboratory, Baton Rouge, LA 70820 USA
| | - Philip Tokarz
- USDA-ARS, Honey Bee Breeding, Genetics and Physiology Laboratory, Baton Rouge, LA 70820 USA
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16
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Influence of reproductive biology on establishment capacity in introduced Hymenoptera species. Biol Invasions 2020. [DOI: 10.1007/s10530-020-02375-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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17
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Global allele polymorphism indicates a high rate of allele genesis at a locus under balancing selection. Heredity (Edinb) 2020; 126:163-177. [PMID: 32855546 DOI: 10.1038/s41437-020-00358-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Revised: 08/13/2020] [Accepted: 08/16/2020] [Indexed: 11/08/2022] Open
Abstract
When selection favours rare alleles over common ones (balancing selection in the form of negative frequency-dependent selection), a locus may maintain a large number of alleles, each at similar frequency. To better understand how allelic richness is generated and maintained at such loci, we assessed 201 sequences of the complementary sex determiner (csd) of the Asian honeybee (Apis cerana), sampled from across its range. Honeybees are haplodiploid; hemizygotes at csd develop as males and heterozygotes as females, while homozygosity is lethal. Thus, csd is under strong negative frequency-dependent selection because rare alleles are less likely to end up in the lethal homozygous form. We find that in A. cerana, as in other Apis, just a few amino acid differences between csd alleles in the hypervariable region are sufficient to trigger female development. We then show that while allelic lineages are spread across geographical regions, allelic differentiation is high between populations, with most csd alleles (86.3%) detected in only one sample location. Furthermore, nucleotide diversity in the hypervariable region indicates an excess of recently arisen alleles, possibly associated with population expansion across Asia since the last glacial maximum. Only the newly invasive populations of the Austral-Pacific share most of their csd alleles. In all, the geographic patterns of csd diversity in A. cerana indicate that high mutation rates and balancing selection act together to produce high rates of allele genesis and turnover at the honeybee sex locus, which in turn leads to its exceptionally high local and global polymorphism.
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18
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Matthey-Doret C, van der Kooi CJ, Jeffries DL, Bast J, Dennis AB, Vorburger C, Schwander T. Mapping of Multiple Complementary Sex Determination Loci in a Parasitoid Wasp. Genome Biol Evol 2020; 11:2954-2962. [PMID: 31596478 PMCID: PMC6821247 DOI: 10.1093/gbe/evz219] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/07/2019] [Indexed: 12/22/2022] Open
Abstract
Sex determination has evolved in a variety of ways and can depend on environmental and genetic signals. A widespread form of genetic sex determination is haplodiploidy, where unfertilized, haploid eggs develop into males and fertilized diploid eggs into females. One of the molecular mechanisms underlying haplodiploidy in Hymenoptera, the large insect order comprising ants, bees, and wasps, is complementary sex determination (CSD). In species with CSD, heterozygosity at one or several loci induces female development. Here, we identify the genomic regions putatively underlying multilocus CSD in the parasitoid wasp Lysiphlebus fabarum using restriction-site associated DNA sequencing. By analyzing segregation patterns at polymorphic sites among 331 diploid males and females, we identify up to four CSD candidate regions, all on different chromosomes. None of the candidate regions feature evidence for homology with the csd gene from the honey bee, the only species in which CSD has been characterized, suggesting that CSD in L. fabarum is regulated via a novel molecular mechanism. Moreover, no homology is shared between the candidate loci, in contrast to the idea that multilocus CSD should emerge from duplications of an ancestral single-locus system. Taken together, our results suggest that the molecular mechanisms underlying CSD in Hymenoptera are not conserved between species, raising the question as to whether CSD may have evolved multiple times independently in the group.
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Affiliation(s)
- Cyril Matthey-Doret
- Department of Ecology and Evolution, University of Lausanne, Switzerland.,Department of Genomes and Genetics, Institut Pasteur, Paris, France
| | - Casper J van der Kooi
- Department of Ecology and Evolution, University of Lausanne, Switzerland.,Groningen Institute for Evolutionary Life Sciences, University of Groningen, the Netherlands
| | - Daniel L Jeffries
- Department of Ecology and Evolution, University of Lausanne, Switzerland
| | - Jens Bast
- Department of Ecology and Evolution, University of Lausanne, Switzerland
| | - Alice B Dennis
- Institute of Integrative Biology, ETH Zürich, Switzerland.,Department of Aquatic Ecology, EAWAG, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland.,Unit of Evolutionary Biology and Systematic Zoology, Institute of Biochemistry and Biology, University of Potsdam, Germany
| | - Christoph Vorburger
- Institute of Integrative Biology, ETH Zürich, Switzerland.,Department of Aquatic Ecology, EAWAG, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland
| | - Tanja Schwander
- Department of Ecology and Evolution, University of Lausanne, Switzerland
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19
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Chen C, Wang H, Liu Z, Chen X, Tang J, Meng F, Shi W. Population Genomics Provide Insights into the Evolution and Adaptation of the Eastern Honey Bee (Apis cerana). Mol Biol Evol 2020; 35:2260-2271. [PMID: 29931308 PMCID: PMC6107058 DOI: 10.1093/molbev/msy130] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
The mechanisms by which organisms adapt to variable environments are a fundamental question in evolutionary biology and are important to protect important species in response to a changing climate. An interesting candidate to study this question is the honey bee Apis cerana, a keystone pollinator with a wide distribution throughout a large variety of climates, that exhibits rapid dispersal. Here, we resequenced the genome of 180 A. cerana individuals from 18 populations throughout China. Using a population genomics approach, we observed considerable genetic variation in A. cerana. Patterns of genetic differentiation indicate high divergence at the subspecies level, and physical barriers rather than distance are the driving force for population divergence. Estimations of divergence time suggested that the main branches diverged between 300 and 500 Ka. Analyses of the population history revealed a substantial influence of the Earth's climate on the effective population size of A. cerana, as increased population sizes were observed during warmer periods. Further analyses identified candidate genes under natural selection that are potentially related to honey bee cognition, temperature adaptation, and olfactory. Based on our results, A. cerana may have great potential in response to climate change. Our study provides fundamental knowledge of the evolution and adaptation of A. cerana.
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Affiliation(s)
- Chao Chen
- Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing, China.,Key Laboratory of Pollinating Insect Biology, Ministry of Agriculture, Beijing, China
| | - Huihua Wang
- Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Zhiguang Liu
- Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Xiao Chen
- Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jiao Tang
- Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Fanming Meng
- Department of Histology and Embryology, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Wei Shi
- Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing, China.,Key Laboratory of Pollinating Insect Biology, Ministry of Agriculture, Beijing, China
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20
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El-Niweiri MAA, Moritz RFA, Lattorff HMG. The Invasion of the Dwarf Honeybee, Apis florea, along the River Nile in Sudan. INSECTS 2019; 10:insects10110405. [PMID: 31731633 PMCID: PMC6920986 DOI: 10.3390/insects10110405] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Revised: 11/04/2019] [Accepted: 11/11/2019] [Indexed: 11/22/2022]
Abstract
The spread of the dwarf honeybee, Apis florea, in Sudan along the river Nile in a linear fashion provides a good model for studying the population dynamics and genetic effects of an invasion by a honeybee species. We use microsatellite DNA analyses to assess the population structure of both invasive A. florea and native Apis mellifera along the river Nile. The invasive A. florea had significantly higher population densities than the wild, native A. mellifera. Nevertheless, we found no indication of competitive displacement, suggesting that although A. florea had a high invasive potential, it coexisted with the native A. mellifera along the river Nile. The genetic data indicated that the invasion of A. florea was established by a single colony.
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Affiliation(s)
- Mogbel A. A. El-Niweiri
- Department of Biology, King Khalid University, Abha, Asir Region 61321, Saudi Arabia;
- Institut für Biologie, Molekulare Ökologie, Martin-Luther-Universität Halle-Wittenberg, 06099 Halle (Saale), Germany;
- Department of Bee Research, National Centre for Research (NCR), Khartoum 11111, Sudan
| | - Robin F. A. Moritz
- Institut für Biologie, Molekulare Ökologie, Martin-Luther-Universität Halle-Wittenberg, 06099 Halle (Saale), Germany;
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
| | - H. Michael G. Lattorff
- Institut für Biologie, Molekulare Ökologie, Martin-Luther-Universität Halle-Wittenberg, 06099 Halle (Saale), Germany;
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
- International Centre of Insect Physiology and Ecology (ICIPE), Nairobi PO Box 30772-00100, Kenya
- Correspondence: ; Tel.: +254-20-863-2066
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21
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Yancan L, Tianle C, Yunhan F, Delong L, Guizhi W. Population genomics and morphological features underlying the adaptive evolution of the eastern honey bee (Apis cerana). BMC Genomics 2019; 20:869. [PMID: 31730443 PMCID: PMC6858728 DOI: 10.1186/s12864-019-6246-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2019] [Accepted: 10/30/2019] [Indexed: 12/19/2022] Open
Abstract
Background The adaptation of organisms to changing environments is self-evident, with the adaptive evolution of organisms to environmental changes being a fundamental problem in evolutionary biology. Bees can pollinate in various environments and climates and play important roles in maintaining the ecological balance of the earth. Results We performed an analysis of 462 Apis cerana (A. cerana) specimens from 31 populations in 11 regions and obtained 39 representative morphological features. We selected 8 A. cerana samples from each population and performed 2b-RAD simplified genome sequencing. A total of 11,506 high-quality single nucleotide polymorphism (SNP) loci were obtained. For these SNPs, the minor allele frequency (MAF) was > 1%, the average number of unique labels for each sample was 49,055, and the average depth was 72.61x. The ratios of the unique labels of all samples were 64.27–86.33%. Conclusions Using 39 morphological characteristics as the data set, we proposed a method for the rapid classification of A. cerana. Using genomics to assess population structure and genetic diversity, we found that A. cerana has a large genetic difference at the ecotype level. A comparison of A. cerana in North China revealed that some physical obstacles, especially the overurbanization of the plains, have isolated the populations of this species. We identified several migration events in North China and Central China. By comparing the differences in the environmental changes in different regions, we found that A. cerana has strong potential for climate change and provides a theoretical basis for investigating and protecting A. cerana.
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Affiliation(s)
- Li Yancan
- Shandong Provincial Key Laboratory of Animal Biotechnology and Disease Control and Prevention, Shandong Agricultural University, 61 Daizong Street, Tai'an, 271018, Shandong Province, People's Republic of China
| | - Chao Tianle
- Shandong Provincial Key Laboratory of Animal Biotechnology and Disease Control and Prevention, Shandong Agricultural University, 61 Daizong Street, Tai'an, 271018, Shandong Province, People's Republic of China
| | - Fan Yunhan
- Shandong Provincial Key Laboratory of Animal Biotechnology and Disease Control and Prevention, Shandong Agricultural University, 61 Daizong Street, Tai'an, 271018, Shandong Province, People's Republic of China
| | - Lou Delong
- Shandong Apiculture Breeding of Improved Varieties and Extension Center, 186 Wuma Street, Tai'an, 271000, Shandong Province, People's Republic of China
| | - Wang Guizhi
- Shandong Provincial Key Laboratory of Animal Biotechnology and Disease Control and Prevention, Shandong Agricultural University, 61 Daizong Street, Tai'an, 271018, Shandong Province, People's Republic of China.
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22
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Vollet-Neto A, Imperatriz-Fonseca VL, Ratnieks FLW. Queen Execution, Diploid Males, and Selection For and Against Polyandry in the Brazilian Stingless Bee Scaptotrigona depilis. Am Nat 2019; 194:725-735. [PMID: 31613668 DOI: 10.1086/705393] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Female mating frequency varies. Determining the causes of this variation is an active research area. We tested the hypothesis that in stingless bees, Meliponini, single mating is due to the execution of queens that make a matched mating at the complementary sex determination locus and have diploid male offspring. We studied the Brazilian species Scaptotrigona depilis. We made up 70 test colonies so that 50% (single matched mating), 25% (double mating), 12.5% (quadruple mating), or 0% (single nonmatched mating) of the emerging brood were diploid males. Queen execution following diploid male emergence was equal and high in colonies producing 50% (77% executed) and 25% (75%) diploid males versus equal and low in colonies producing 12.5% (7%) and 0% (0%) diploid males. These results show that queens that mate with two males with similar paternity suffer an increased chance of being executed, which selects against double mating. However, double mating with unequal paternity (e.g., 25∶75), which occasionally occurs in S. depilis, is selectively neutral. Single mating and double mating with unequal paternity form one adaptive peak. The results show a second adaptive peak at quadruple mating. However, this is inaccessible via gradual evolutionary change in a selective landscape with reduced fitness at double mating.
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23
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Queffelec J, Wooding AL, Greeff JM, Garnas JR, Hurley BP, Wingfield MJ, Slippers B. Mechanisms that influence sex ratio variation in the invasive hymenopteran Sirex noctilio in South Africa. Ecol Evol 2019; 9:7966-7973. [PMID: 31380064 PMCID: PMC6662311 DOI: 10.1002/ece3.5305] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Revised: 03/11/2019] [Accepted: 03/29/2019] [Indexed: 11/15/2022] Open
Abstract
Sirex noctilio is an economically important invasive pest of commercial pine forestry in the Southern Hemisphere. Newly established invasive populations of this woodwasp are characterized by highly male-biased sex ratios that subsequently revert to those seen in the native range. This trend was not observed in the population of S. noctilio from the summer rainfall regions in South Africa, which remained highly male-biased for almost a decade. The aim of this study was to determine the cause of this persistent male bias. As an explanation for this pattern, we test hypotheses related to mating success, female investment in male versus female offspring, and genetic diversity affecting diploid male production due to complementary sex determination. We found that 61% of females in a newly established S. noctilio population were mated. Microsatellite data analysis showed that populations of S. noctilio from the summer rainfall regions in South Africa are far less genetically diverse than those from the winter rainfall region, with mean Nei's unbiased gene diversity indexes of 0.056 and 0.273, respectively. These data also identified diploid males at low frequencies in both the winter (5%) and summer (2%) rainfall regions. The results suggest the presence of a complementary sex determination mechanism in S. noctilio, but imply that reduced genetic diversity is not the main driver of the male bias observed in the summer rainfall region. Among all the factors considered, selective investment in sons appears to have the most significant influence on male bias in S. noctilio populations. Why this investment remains different in frontier or early invasive populations is not clear but could be influenced by females laying unfertilized eggs to avoid diploid male production in populations with a high genetic relatedness.
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Affiliation(s)
- Joséphine Queffelec
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology InstituteUniversity of PretoriaPretoriaSouth Africa
| | - Amy L. Wooding
- Department of Biochemistry, Genetics and MicrobiologyUniversity of PretoriaPretoriaSouth Africa
| | - Jaco M. Greeff
- Department of Biochemistry, Genetics and MicrobiologyUniversity of PretoriaPretoriaSouth Africa
| | - Jeffrey R. Garnas
- Department of Natural Resources and the EnvironmentUniversity of New HampshireDurhamNew Hampshire
- Department of Zoology, Forestry and Agricultural Biotechnology InstituteUniversity of PretoriaPretoriaSouth Africa
| | - Brett P. Hurley
- Department of Zoology, Forestry and Agricultural Biotechnology InstituteUniversity of PretoriaPretoriaSouth Africa
| | - Michael J. Wingfield
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology InstituteUniversity of PretoriaPretoriaSouth Africa
- Department of Zoology, Forestry and Agricultural Biotechnology InstituteUniversity of PretoriaPretoriaSouth Africa
| | - Bernard Slippers
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology InstituteUniversity of PretoriaPretoriaSouth Africa
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24
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Lack of genetic structuring, low effective population sizes and major bottlenecks characterise common and German wasps in New Zealand. Biol Invasions 2019. [DOI: 10.1007/s10530-019-02039-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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25
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Darwinian black box selection for resistance to settled invasive Varroa destructor parasites in honey bees. Biol Invasions 2019. [DOI: 10.1007/s10530-019-02001-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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26
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Gloag RS, Christie JR, Ding G, Stephens RE, Buchmann G, Oldroyd BP. Workers' sons rescue genetic diversity at the sex locus in an invasive honey bee population. Mol Ecol 2019; 28:1585-1592. [DOI: 10.1111/mec.15031] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2018] [Revised: 12/11/2018] [Accepted: 01/10/2019] [Indexed: 11/29/2022]
Affiliation(s)
- Rosalyn S. Gloag
- Behaviour and Genetics of Social Insects Laboratory, School of Life and Environment Sciences University of Sydney Sydney New South Wales Australia
| | - Joshua R. Christie
- Behaviour and Genetics of Social Insects Laboratory, School of Life and Environment Sciences University of Sydney Sydney New South Wales Australia
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zürich Switzerland
| | - Guiling Ding
- Behaviour and Genetics of Social Insects Laboratory, School of Life and Environment Sciences University of Sydney Sydney New South Wales Australia
- Key Laboratory of Pollinating Insect Biology of the Ministry of Agriculture, Institute of Apicultural Research Chinese Academy of Agricultural Sciences Beijing China
| | - Ruby E. Stephens
- Behaviour and Genetics of Social Insects Laboratory, School of Life and Environment Sciences University of Sydney Sydney New South Wales Australia
| | - Gabriele Buchmann
- Behaviour and Genetics of Social Insects Laboratory, School of Life and Environment Sciences University of Sydney Sydney New South Wales Australia
| | - Benjamin P. Oldroyd
- Behaviour and Genetics of Social Insects Laboratory, School of Life and Environment Sciences University of Sydney Sydney New South Wales Australia
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27
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Strategies of the invasive tropical fire ant (Solenopsis geminata) to minimize inbreeding costs. Sci Rep 2019; 9:4566. [PMID: 30872734 PMCID: PMC6418234 DOI: 10.1038/s41598-019-41031-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Accepted: 02/25/2019] [Indexed: 11/08/2022] Open
Abstract
How invasive species overcome challenges associated with low genetic diversity is unclear. Invasive ant populations with low genetic diversity sometimes produce sterile diploid males, which do not contribute to colony labour or reproductive output. We investigated how inbreeding affects colony founding and potential strategies to overcome its effects in the invasive tropical fire ant, Solenopsis geminata. Our genetic analyses of field samples revealed that 13-100% of males per colony (n = 8 males per 10 colonies) were diploid, and that all newly mated queens (n = 40) were single-mated. Our laboratory experiment in which we assigned newly mated queens to nests consisting of 1, 2, 3, or 5 queens (n = 95 ± 9 replicates) revealed that pleometrosis (queens founding their nest together) and diploid male larvae execution can compensate for diploid male load. The proportion of diploid male producing (DMP) colonies was 22.4%, and DMP colonies produced fewer pupae and adult workers than non-DMP colonies. Pleometrosis significantly increased colony size. Queens executed their diploid male larvae in 43.5% of the DMP colonies, and we hypothesize that cannibalism benefits incipient colonies because queens can redirect nutrients to worker brood. Pleometrosis and cannibalism of diploid male larvae represent strategies through which invasive ants can successfully establish despite high inbreeding.
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28
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Dogantzis KA, Zayed A. Recent advances in population and quantitative genomics of honey bees. CURRENT OPINION IN INSECT SCIENCE 2019; 31:93-98. [PMID: 31109680 DOI: 10.1016/j.cois.2018.11.010] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2018] [Revised: 11/09/2018] [Accepted: 11/30/2018] [Indexed: 06/09/2023]
Abstract
The increase in the availability of individual Apis mellifera genomes has resulted in significant progress toward understanding the evolution and adaptation of the honey bee. These efforts have identified new subspecies, evolutionary lineages, and a significant number of genes involved with adaptations and colony-level quantitative traits. Many studies have also developed genetic assays that are being used to monitor the movement and admixture of honey bee populations. These resources are valuable for conservation and breeding programs that seek to improve the economic value of colonies or preserve locally adapted populations and subspecies. This review provides a brief discussion on how population and quantitative genomic studies has improved our understanding of the honey bee.
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Affiliation(s)
- Kathleen A Dogantzis
- Department of Biology, York University, 4700 Keele St., Toronto, Ontario, Canada
| | - Amro Zayed
- Department of Biology, York University, 4700 Keele St., Toronto, Ontario, Canada.
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29
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Nair A, Nonaka E, van Nouhuys S. Increased fluctuation in a butterfly metapopulation leads to diploid males and decline of a hyperparasitoid. Proc Biol Sci 2018; 285:rspb.2018.0372. [PMID: 30135149 PMCID: PMC6125898 DOI: 10.1098/rspb.2018.0372] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2018] [Accepted: 07/20/2018] [Indexed: 12/14/2022] Open
Abstract
Climate change can increase spatial synchrony of population dynamics, leading to large-scale fluctuation that destabilizes communities. High trophic level species such as parasitoids are disproportionally affected because they depend on unstable resources. Most parasitoid wasps have complementary sex determination, producing sterile males when inbred, which can theoretically lead to population extinction via the diploid male vortex (DMV). We examined this process empirically using a hyperparasitoid population inhabiting a spatially structured host population in a large fragmented landscape. Over four years of high host butterfly metapopulation fluctuation, diploid male production by the wasp increased, and effective population size declined precipitously. Our multitrophic spatially structured model shows that host population fluctuation can cause local extinctions of the hyperparasitoid because of the DMV. However, regionally it persists because spatial structure allows for efficient local genetic rescue via balancing selection for rare alleles carried by immigrants. This is, to our knowledge, the first empirically based study of the possibility of the DMV in a natural host–parasitoid system.
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Affiliation(s)
- Abhilash Nair
- Metapopulation Research Centre, Department of Biosciences, University of Helsinki, PO Box 65, 00014 Helsinki, Finland
| | - Etsuko Nonaka
- Metapopulation Research Centre, Department of Biosciences, University of Helsinki, PO Box 65, 00014 Helsinki, Finland.,Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, 114 18, Sweden
| | - Saskya van Nouhuys
- Metapopulation Research Centre, Department of Biosciences, University of Helsinki, PO Box 65, 00014 Helsinki, Finland .,Department of Entomology, Cornell University, Ithaca, NY 14853, USA
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30
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Vanbergen AJ, Espíndola A, Aizen MA. Risks to pollinators and pollination from invasive alien species. Nat Ecol Evol 2017; 2:16-25. [DOI: 10.1038/s41559-017-0412-3] [Citation(s) in RCA: 82] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2017] [Accepted: 11/10/2017] [Indexed: 11/09/2022]
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Avalos A, Pan H, Li C, Acevedo-Gonzalez JP, Rendon G, Fields CJ, Brown PJ, Giray T, Robinson GE, Hudson ME, Zhang G. A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee. Nat Commun 2017; 8:1550. [PMID: 29142254 PMCID: PMC5688081 DOI: 10.1038/s41467-017-01800-0] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2017] [Accepted: 10/16/2017] [Indexed: 12/30/2022] Open
Abstract
Highly aggressive Africanized honeybees (AHB) invaded Puerto Rico (PR) in 1994, displacing gentle European honeybees (EHB) in many locations. Gentle AHB (gAHB), unknown anywhere else in the world, subsequently evolved on the island within a few generations. Here we sequence whole genomes from gAHB and EHB populations, as well as a North American AHB population, a likely source of the founder AHB on PR. We show that gAHB retains high levels of genetic diversity after evolution of gentle behaviour, despite selection on standing variation. We observe multiple genomic loci with significant signatures of selection. Rapid evolution during colonization of novel habitats can generate major changes to characteristics such as morphological or colouration traits, usually controlled by one or more major genetic loci. Here we describe a soft selective sweep, acting at multiple loci across the genome, that occurred during, and may have mediated, the rapid evolution of a behavioural trait. Africanized honey bees (AHB) are notoriously aggressive, but in Puerto Rico they have a ‘gentle’ phenotype. Here, Avalos et al. show that there has been a soft selective sweep at several loci in the Puerto Rican AHB population and suggest a role in the rapid evolution of gentle behaviour.
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Affiliation(s)
- Arian Avalos
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Hailin Pan
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, 650223, Kunming, China.,China National Genebank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China.,Centre for Social Evolution, Department of Biology, Universitetsparken 15, University of Copenhagen, DK-2100, Copenhagen, Denmark
| | - Cai Li
- China National Genebank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China
| | | | - Gloria Rendon
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.,High-Performance Computing for Biology (HPCBio), Carver Biotechnology Center, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Christopher J Fields
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.,High-Performance Computing for Biology (HPCBio), Carver Biotechnology Center, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Patrick J Brown
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.,Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Tugrul Giray
- Departamento de Biología, Universidad de Puerto Rico, Río Piedras, PR, 00931, USA
| | - Gene E Robinson
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. .,Department of Entomology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. .,Neuroscience Program, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
| | - Matthew E Hudson
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. .,High-Performance Computing for Biology (HPCBio), Carver Biotechnology Center, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. .,Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
| | - Guojie Zhang
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, 650223, Kunming, China. .,China National Genebank, BGI-Shenzhen, 518083, Shenzhen, Guangdong, China. .,Centre for Social Evolution, Department of Biology, Universitetsparken 15, University of Copenhagen, DK-2100, Copenhagen, Denmark.
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Ben-Shlomo R. Invasiveness, chimerism and genetic diversity. Mol Ecol 2017; 26:6502-6509. [PMID: 28950415 DOI: 10.1111/mec.14364] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2015] [Revised: 08/11/2017] [Accepted: 09/13/2017] [Indexed: 01/09/2023]
Abstract
Adaptation for invasiveness should comprise the capability to exploit and prosper in a wide range of ecological conditions and is therefore expected to be associated with a certain level of genetic diversity. Paradoxically, however, invasive populations are established by only a few founders, resulting in low genetic diversity. As a conceivable way of attaining high genetic diversity and high variance of gene expression even when a small number of founders is involved in invasiveness, I suggest here chimerism, a fusion between different individuals-a common phenomenon found in numerous phyla. The composite entity offers the chimeric organism genetic flexibility and higher inclusive fitness that depends on the joint genomic fitness of the original partners. The ability to form a chimeric entity is also applied to subsequent generations, and consequently, the level of genetic diversity does not decline over generations of population establishment following invasion.
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Affiliation(s)
- Rachel Ben-Shlomo
- Department of Biology and the Environment, University of Haifa - Oranim, Tivon, Israel
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33
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Ding G, Xu H, Oldroyd BP, Gloag RS. Extreme polyandry aids the establishment of invasive populations of a social insect. Heredity (Edinb) 2017; 119:381-387. [PMID: 28832579 DOI: 10.1038/hdy.2017.49] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2017] [Revised: 06/27/2017] [Accepted: 07/12/2017] [Indexed: 11/09/2022] Open
Abstract
Although monandry is believed to have facilitated the evolution of eusociality, many highly eusocial insects have since evolved extreme polyandry. The transition to extreme polyandry was likely driven by the benefits of within-colony genetic variance to task specialization and/or disease resistance, but the extent to which it confers secondary benefits, once evolved, is unclear. Here we investigate the consequences of extreme polyandry on the invasive potential of the Asian honey bee, Apis cerana. In honey bees and other Hymenoptera, small newly founded invasive populations must overcome the genetic constraint of their sex determination system that requires heterozygosity at a sex-determining locus to produce viable females. We find A. cerana queens in an invasive population mate with an average of 27 males (range 16-42) that would result in the founding queen/s carrying 75% of their source population's sex alleles in stored sperm. This mating frequency is similar to native-range Chinese A. cerana (mean 29 males, range 19-46). Simulations reveal that extreme polyandry reduces the risk, relative to monandry or moderate polyandry, that colonies produce a high incidence of inviable brood in populations that have experienced a founder event, that is, when sex allele diversity is low and/or allele frequencies are unequal. Thus, extreme polyandry aids the invasiveness of A. cerana in two ways: (1) by increasing the sex locus allelic richness carried to new populations with each founder, thereby increasing sex locus heterozygosity; and (2) by reducing the population variance in colony fitness following a founder event.
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Affiliation(s)
- G Ding
- College of Plant Protection, China Agricultural University, Beijing, China.,Key Laboratory of Pollinating Insect Biology of the Ministry of Agriculture, Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing, China
| | - H Xu
- College of Plant Protection, China Agricultural University, Beijing, China
| | - B P Oldroyd
- Behaviour and Genetics of Social Insects Laboratory, School of Life and Environmental Sciences, The University of Sydney, Sydney, New South Wales, Australia
| | - R S Gloag
- Behaviour and Genetics of Social Insects Laboratory, School of Life and Environmental Sciences, The University of Sydney, Sydney, New South Wales, Australia
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Llaurens V, Whibley A, Joron M. Genetic architecture and balancing selection: the life and death of differentiated variants. Mol Ecol 2017; 26:2430-2448. [PMID: 28173627 DOI: 10.1111/mec.14051] [Citation(s) in RCA: 91] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2016] [Revised: 12/15/2016] [Accepted: 12/19/2016] [Indexed: 01/02/2023]
Abstract
Balancing selection describes any form of natural selection, which results in the persistence of multiple variants of a trait at intermediate frequencies within populations. By offering up a snapshot of multiple co-occurring functional variants and their interactions, systems under balancing selection can reveal the evolutionary mechanisms favouring the emergence and persistence of adaptive variation in natural populations. We here focus on the mechanisms by which several functional variants for a given trait can arise, a process typically requiring multiple epistatic mutations. We highlight how balancing selection can favour specific features in the genetic architecture and review the evolutionary and molecular mechanisms shaping this architecture. First, balancing selection affects the number of loci underlying differentiated traits and their respective effects. Control by one or few loci favours the persistence of differentiated functional variants by limiting intergenic recombination, or its impact, and may sometimes lead to the evolution of supergenes. Chromosomal rearrangements, particularly inversions, preventing adaptive combinations from being dissociated are increasingly being noted as features of such systems. Similarly, due to the frequency of heterozygotes maintained by balancing selection, dominance may be a key property of adaptive variants. High heterozygosity and limited recombination also influence associated genetic load, as linked recessive deleterious mutations may be sheltered. The capture of deleterious elements in a locus under balancing selection may reinforce polymorphism by further promoting heterozygotes. Finally, according to recent genomewide scans, balanced polymorphism might be more pervasive than generally thought. We stress the need for both functional and ecological studies to characterize the evolutionary mechanisms operating in these systems.
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Affiliation(s)
- Violaine Llaurens
- Institut de Systématique Evolution et Biodiversité (UMR 7205 CNRS, MNHN, UPMC, EPHE), Muséum National d'Histoire Naturelle - CP50, 45 rue Buffon, 75005, Paris, France
| | - Annabel Whibley
- Cell and Developmental Biology, John Innes Centre, Norwich, Norfolk, NR4 7UH, UK
| | - Mathieu Joron
- Centre d'Ecologie Fonctionnelle et Evolutive (UMR 5175 CNRS, Université de Montpellier, Université Paul Valéry Montpellier, EPHE), 1919 route de Mende, 34293, Montpellier, France
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