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Motovilov KA, Mostert AB. Melanin: Nature's 4th bioorganic polymer. SOFT MATTER 2024; 20:5635-5651. [PMID: 39012013 DOI: 10.1039/d4sm00491d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/17/2024]
Abstract
The pigments known as the melanins are widely recognized for their responsibility in the coloration of human skin, eyes, hair, and minimising the harmful effects of solar ultraviolet radiation. But specialists are aware that the melanins are present in all living kingdoms, barring viruses, and have functionality that extends beyond neutralizing ionising radiation. The ubiquitous presence of melanin in almost all human organs, recognized in recent years, as well as the presence of melanin in organisms that are evolutionarily distant from each other, indicate the fundamental importance of this class of material for all life forms. In this review, we argue for the need to accept melanins as the fourth primordial class of biological polymers, along with nucleic acids, proteins and polysaccharides. We consistently compare the properties of these canonical biological polymers with the properties of melanin and highlight key features that fundamentally distinguish melanins, their function and its mysteries.
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Affiliation(s)
- K A Motovilov
- Center for Photonics and 2D Materials, Moscow Institute of Physics and Technology, Institutsky Lane 9, Dolgoprudny 141701, Moscow Region, Russia.
| | - A B Mostert
- Department of Physics and Centre for Integrative Semiconductor Materials, Swansea University Bay Campus, Fabian Way, Swansea SA1 8EN, UK
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2
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Gagkayeva ZV, Gorshunov BP, Kachesov AY, Motovilov KA. Infrared fingerprints of water collective dynamics indicate proton transport in biological systems. Phys Rev E 2022; 105:044409. [PMID: 35590571 DOI: 10.1103/physreve.105.044409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 04/03/2022] [Indexed: 06/15/2023]
Abstract
Recent publications on spectroscopy of water layers in water bridge structures revealed a significant enhancement of the proton mobility and the dielectric contribution of translational vibrations of water molecules in the interfacial layers compared to bulk water. Herewith, the results of long-term studies of proton dynamics in solid-state acids have shown that proton mobility increases significantly with the predominance of hydronium, but not Zundel, cations in the aqueous phase. In the present work, in the light of these data, we reanalyzed our previously published results on broadband dielectric spectroscopy of bovine heart cytochrome c, bovine serum albumin, and the extracellular matrix and filaments of Shewanella oneidensis MR-1. We revealed that, just as in water bridges, an increase in electrical conductivity in these systems correlates with an increase in the dielectric contribution of water molecular translational vibrations. In addition, the appearance of spectral signatures of the hydronium cations was observed only in those cases when the system revealed noticeable electrical conductivity due to delocalized charge carriers.
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Affiliation(s)
- Z V Gagkayeva
- Center for Photonics and 2D Materials, Moscow Institute of Physics and Technology (National Research University), 9 Institutskiy per., Dolgoprudny, Moscow Region 141701, Russian Federation
| | - B P Gorshunov
- Center for Photonics and 2D Materials, Moscow Institute of Physics and Technology (National Research University), 9 Institutskiy per., Dolgoprudny, Moscow Region 141701, Russian Federation
| | - A Ye Kachesov
- Center for Photonics and 2D Materials, Moscow Institute of Physics and Technology (National Research University), 9 Institutskiy per., Dolgoprudny, Moscow Region 141701, Russian Federation
| | - K A Motovilov
- Center for Photonics and 2D Materials, Moscow Institute of Physics and Technology (National Research University), 9 Institutskiy per., Dolgoprudny, Moscow Region 141701, Russian Federation
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Musina GR, Chernomyrdin NV, Gafarova ER, Gavdush AA, Shpichka AJ, Komandin GA, Anzin VB, Grebenik EA, Kravchik MV, Istranova EV, Dolganova IN, Zaytsev KI, Timashev PS. Moisture adsorption by decellularized bovine pericardium collagen matrices studied by terahertz pulsed spectroscopy and solid immersion microscopy. BIOMEDICAL OPTICS EXPRESS 2021; 12:5368-5386. [PMID: 34692188 PMCID: PMC8515980 DOI: 10.1364/boe.433216] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Revised: 07/26/2021] [Accepted: 07/27/2021] [Indexed: 05/03/2023]
Abstract
In this paper, terahertz (THz) pulsed spectroscopy and solid immersion microscopy were applied to study interactions between water vapor and tissue scaffolds-the decellularized bovine pericardium (DBP) collagen matrices, in intact form, cross-linked with the glutaraldehyde or treated by plasma. The water-absorbing properties of biomaterials are prognostic for future cell-mediated reactions of the recipient tissue with the scaffold. Complex dielectric permittivity of DBPs was measured in the 0.4-2.0 THz frequency range, while the samples were first dehydrated and then exposed to water vapor atmosphere with 80.0 ± 5.0% relative humidity. These THz dielectric measurements of DBPs and the results of their weighting allowed to estimate the adsorption time constants, an increase of tissue mass, as well as dispersion of these parameters. During the adsorption process, changes in the DBPs' dielectric permittivity feature an exponential character, with the typical time constant of =8-10 min, the transient process saturation at =30 min, and the tissue mass improvement by =1-3%. No statistically-relevant differences between the measured properties of the intact and treated DBPs were observed. Then, contact angles of wettability were measured for the considered DBPs using a recumbent drop method, while the observed results showed that treatments of DBP somewhat affects their surface energies, polarity, and hydrophilicity. Thus, our studies revealed that glutaraldehyde and plasma treatment overall impact the DBP-water interactions, but the resultant effects appear to be quite complex and comparable to the natural variability of the tissue properties. Such a variability was attributed to the natural heterogeneity of tissues, which was confirmed by the THz microscopy data. Our findings are important for further optimization of the scaffolds' preparation and treatment technologies. They pave the way for THz technology use as a non-invasive diagnosis tool in tissue engineering and regenerative medicine.
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Affiliation(s)
- G R Musina
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Russia
- Bauman Moscow State Technical University, Russia
| | - N V Chernomyrdin
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Russia
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University (Sechenov University), Russia
- World-Class Research Center "Digital Biodesign & Personalized Healthcare", Sechenov First Moscow State Medical University (Sechenov University), Russia
| | - E R Gafarova
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University (Sechenov University), Russia
- World-Class Research Center "Digital Biodesign & Personalized Healthcare", Sechenov First Moscow State Medical University (Sechenov University), Russia
| | - A A Gavdush
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Russia
- Bauman Moscow State Technical University, Russia
| | - A J Shpichka
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University (Sechenov University), Russia
- World-Class Research Center "Digital Biodesign & Personalized Healthcare", Sechenov First Moscow State Medical University (Sechenov University), Russia
- Chemistry Department, Lomonosov Moscow State University, Russia
| | - G A Komandin
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Russia
- Bauman Moscow State Technical University, Russia
| | - V B Anzin
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Russia
| | - E A Grebenik
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University (Sechenov University), Russia
| | - M V Kravchik
- Scientific Research Institute of Eye Diseases, Russia
| | - E V Istranova
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University (Sechenov University), Russia
| | - I N Dolganova
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University (Sechenov University), Russia
- World-Class Research Center "Digital Biodesign & Personalized Healthcare", Sechenov First Moscow State Medical University (Sechenov University), Russia
- Institute of Solid State Physics of the Russian Academy of Sciences, Russia
| | - K I Zaytsev
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Russia
- Bauman Moscow State Technical University, Russia
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University (Sechenov University), Russia
| | - P S Timashev
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University (Sechenov University), Russia
- World-Class Research Center "Digital Biodesign & Personalized Healthcare", Sechenov First Moscow State Medical University (Sechenov University), Russia
- Chemistry Department, Lomonosov Moscow State University, Russia
- Department of Polymers and Composites, N. N. Semenov Institute of Chemical Physics, Russia
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Motovilov KA, Grinenko V, Savinov M, Gagkaeva ZV, Kadyrov LS, Pronin AA, Bedran ZV, Zhukova ES, Mostert AB, Gorshunov BP. Redox chemistry in the pigment eumelanin as a function of temperature using broadband dielectric spectroscopy. RSC Adv 2019; 9:3857-3867. [PMID: 35518099 PMCID: PMC9060503 DOI: 10.1039/c8ra09093a] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Accepted: 01/22/2019] [Indexed: 12/12/2022] Open
Abstract
We demonstrate on synthetic eumelanin that biomolecular conductivity models should account for temperature and hydration effects coherently.
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Affiliation(s)
| | - V. Grinenko
- Institute for Solid State and Materials Physics
- TU Dresden
- Dresden
- Germany
- Institute for Metallic Materials
| | - M. Savinov
- Institute of Physics AS CR
- Praha 8
- Czech Republic
| | | | | | - A. A. Pronin
- Prokhorov General Physics Institute of the Russian Academy of Sciences
- Moscow
- Russia
| | - Z. V. Bedran
- Moscow Institute of Physics and Technology
- Russia
| | - E. S. Zhukova
- Moscow Institute of Physics and Technology
- Russia
- Prokhorov General Physics Institute of the Russian Academy of Sciences
- Moscow
- Russia
| | | | - B. P. Gorshunov
- Moscow Institute of Physics and Technology
- Russia
- Prokhorov General Physics Institute of the Russian Academy of Sciences
- Moscow
- Russia
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Gagkaeva ZV, Zhukova ES, Grinenko V, Grebenko AK, Sidoruk KV, Voeikova TA, Dressel M, Gorshunov BP. Terahertz-infrared spectroscopy of Shewanella oneidensis MR-1 extracellular matrix. J Biol Phys 2018; 44:401-417. [PMID: 29732506 PMCID: PMC6082806 DOI: 10.1007/s10867-018-9497-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2017] [Accepted: 04/13/2018] [Indexed: 01/30/2023] Open
Abstract
Employing optical spectroscopy we have performed a comparative study of the dielectric response of extracellular matrix and filaments of electrogenic bacteria Shewanella oneidensis MR-1, cytochrome c, and bovine serum albumin. Combining infrared transmission measurements on thin layers with data of the terahertz spectra, we obtain the dielectric permittivity and AC conductivity spectra of the materials in a broad frequency band from a few cm-1 up to 7000 cm-1 in the temperature range from 5 to 300 K. Strong absorption bands are observed in the three materials that cover the range from 10 to 300 cm-1 and mainly determine the terahertz absorption. When cooled down to liquid helium temperatures, the bands in Shewanella oneidensis MR-1 and cytochrome c reveal a distinct fine structure. In all three materials, we identify the presence of liquid bound water in the form of librational and translational absorption bands at ≈ 200 and ≈ 600 cm-1, respectively. The sharp excitations seen above 1000 cm-1 are assigned to intramolecular vibrations.
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Affiliation(s)
- Z V Gagkaeva
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia
| | - E S Zhukova
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia
| | - V Grinenko
- Institute for Metallic Materials, IFW Dresden, Dresden, Germany
| | - A K Grebenko
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia
| | - K V Sidoruk
- Scientific Center of Russian Federation Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, Russia
| | - T A Voeikova
- Scientific Center of Russian Federation Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, Russia
| | - M Dressel
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia
- Physikalisches Institut, Universität Stuttgart, Stuttgart, Germany
| | - B P Gorshunov
- Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia.
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Grebenko A, Dremov V, Barzilovich P, Bubis A, Sidoruk K, Voeikova T, Gagkaeva Z, Chernov T, Korostylev E, Gorshunov B, Motovilov K. Impedance spectroscopy of single bacterial nanofilament reveals water-mediated charge transfer. PLoS One 2018; 13:e0191289. [PMID: 29351332 PMCID: PMC5774759 DOI: 10.1371/journal.pone.0191289] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Accepted: 01/02/2018] [Indexed: 11/19/2022] Open
Abstract
For decades respiratory chain and photosystems were the main firing field of the studies devoted to mechanisms of electron transfer in proteins. The concept of conjugated lateral electron and transverse proton transport during cellular respiration and photosynthesis, which was formulated in the beginning of 1960-s, has been confirmed by thousands of experiments. However, charge transfer in recently discovered bacterial nanofilaments produced by various electrogenic bacteria is regarded currently outside of electron and proton conjugation concept. Here we report the new study of charge transfer within nanofilaments produced by Shewanella oneidensis MR-1 conducted in atmosphere of different relative humidity (RH). We utilize impedance spectroscopy and DC (direct current) transport measurements to find out the peculiarities of conductivity and Raman spectroscopy to analyze the nanofilaments' composition. Data analysis demonstrates that apparent conductivity of nanofilaments has crucial sensitivity to humidity and contains several components including one with unusual behavior which we assign to electron transport. We demonstrate that in the case of Shewanella oneidensis MR-1 charge transfer within these objects is strongly mediated by water. Basing on current data analysis of conductivity we conclude that the studied filaments of Shewanella oneidensis MR-1 are capable of hybrid (conjugated) electron and ion conductivity.
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Affiliation(s)
- Artem Grebenko
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
- Institute of Solid State Physics (RAS), Academician Osipyana street 2, Chernogolovka, Russia
| | - Vyacheslav Dremov
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
- Institute of Solid State Physics (RAS), Academician Osipyana street 2, Chernogolovka, Russia
| | - Petr Barzilovich
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
- Institute of Problems of Chemical Physics (RAS), Academician Semenov avenue 1, Chernogolovka, Russia
| | - Anton Bubis
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
- Institute of Solid State Physics (RAS), Academician Osipyana street 2, Chernogolovka, Russia
| | - Konstantin Sidoruk
- Scientific Center of Russian Federation Research Institute for Genetics and Selection of Industrial Microorganisms, 1-st Dorozhniy pr., 1, Moscow, Russia
| | - Tatiyana Voeikova
- Scientific Center of Russian Federation Research Institute for Genetics and Selection of Industrial Microorganisms, 1-st Dorozhniy pr., 1, Moscow, Russia
| | - Zarina Gagkaeva
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
| | - Timur Chernov
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
- Institute of Problems of Chemical Physics (RAS), Academician Semenov avenue 1, Chernogolovka, Russia
| | - Evgeny Korostylev
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
| | - Boris Gorshunov
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
| | - Konstantin Motovilov
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
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