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Ramatsetse KE, Ramashia ES, Mashau ME. A review on health benefits, antimicrobial and antioxidant properties of Bambara groundnut ( Vigna subterranean). INTERNATIONAL JOURNAL OF FOOD PROPERTIES 2023. [DOI: 10.1080/10942912.2022.2153864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Kgaogelo Edwin Ramatsetse
- Department of Food Science and Technology, Faculty of Science, Engineering and Agriculture, University of Venda, Thohoyandou, South Africa
| | - Eugenia Shonisani Ramashia
- Department of Food Science and Technology, Faculty of Science, Engineering and Agriculture, University of Venda, Thohoyandou, South Africa
- School of Bioengineering and Food Technology, Faculty of Applied Sciences and Biotechnology, Shoolini University, Solan, HP, India
| | - Mpho Edward Mashau
- Department of Food Science and Technology, Faculty of Science, Engineering and Agriculture, University of Venda, Thohoyandou, South Africa
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2
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Ngwenya ZD, Dakora FD. Symbiotic Functioning and Photosynthetic Rates Induced by Rhizobia Associated with Jack Bean ( Canavalia ensiformis L.) Nodulation in Eswatini. Microorganisms 2023; 11:2786. [PMID: 38004797 PMCID: PMC10673450 DOI: 10.3390/microorganisms11112786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 11/07/2023] [Accepted: 11/14/2023] [Indexed: 11/26/2023] Open
Abstract
Improving the efficiency of the legume-rhizobia symbiosis in African soils for increased grain yield would require the use of highly effective strains capable of nodulating a wide range of legume plants. This study assessed the photosynthetic functioning, N2 fixation, relative symbiotic effectiveness (%RSE) and C assimilation of 22 jack bean (Canavalia ensiformis L.) microsymbionts in Eswatini soils as a first step to identifying superior isolates for inoculant production. The results showed variable nodule number, nodule dry matter, shoot biomass and photosynthetic rates among the strains tested under glasshouse conditions. Both symbiotic parameters and C accumulation differed among the test isolates at the shoot, root and whole-plant levels. Although 7 of the 22 jack bean isolates showed much greater relative symbiotic efficiency than the commercial Bradyrhizobium strain XS21, only one isolate (TUTCEeS2) was statistically superior to the inoculant strain, which indicates its potential for use in inoculant formulation after field testing. Furthermore, the isolates that recorded high %RSE elicited greater amounts of fixed N.
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Affiliation(s)
- Zanele D. Ngwenya
- Department of Crop Sciences, Tshwane University of Technology, Private Bag X680, Pretoria 0001, South Africa;
| | - Felix D. Dakora
- Department of Chemistry, Tshwane University of Technology, Private Bag X680, Pretoria 0001, South Africa
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Gunununu RP, Mohammed M, Jaiswal SK, Dakora FD. Phylogeny and symbiotic effectiveness of indigenous rhizobial microsymbionts of common bean (Phaseolus vulgaris L.) in Malkerns, Eswatini. Sci Rep 2023; 13:17029. [PMID: 37813863 PMCID: PMC10562383 DOI: 10.1038/s41598-023-43634-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Accepted: 09/26/2023] [Indexed: 10/11/2023] Open
Abstract
In most legumes, the rhizobial symbionts exhibit diversity across different environments. Although common bean (Phaseolus vulgaris L.) is one of the important legumes in southern Africa, there is no available information on the genetic diversity and N2-fixing effectiveness of its symbionts in Malkerns, Eswatini. In this study, we assessed the phylogenetic positions of rhizobial microsymbionts of common bean from Malkerns in Eswatini. The isolates obtained showed differences in morpho-physiology and N2-fixing efficiency. A dendrogram constructed from the ERIC-PCR banding patterns, grouped a total of 88 tested isolates into 80 ERIC-PCR types if considered at a 70% similarity cut-off point. Multilocus sequence analysis using 16S rRNA, rpoB, dnaK, gyrB, and glnII and symbiotic (nifH and nodC) gene sequences closely aligned the test isolates to the type strains of Rhizobium muluonense, R. paranaense, R. pusense, R. phaseoli and R. etli. Subjecting the isolates in this study to further description can potentially reveal novel species. Most of the isolates tested were efficient in fixing nitrogen and elicited greater stomatal conductance and photosynthetic rates in the common bean. Relative effectiveness (RE) varied from 18 to 433%, with 75 (85%) out of the 88 tested isolates being more effective than the nitrate fed control plants.
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Affiliation(s)
- Rotondwa P Gunununu
- Department of Crop Sciences, Tshwane University of Technology, Private Bag X680, Pretoria, 0001, South Africa
| | - Mustapha Mohammed
- Department of Chemistry, Tshwane University of Technology, Private Bag X680, Pretoria, 0001, South Africa
- Department of Crop Science, University for Development Studies, P.O. Box TL1882, Tamale, Ghana
| | - Sanjay K Jaiswal
- Department of Chemistry, Tshwane University of Technology, Private Bag X680, Pretoria, 0001, South Africa
| | - Felix D Dakora
- Department of Chemistry, Tshwane University of Technology, Private Bag X680, Pretoria, 0001, South Africa.
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Maitra S, Praharaj S, Brestic M, Sahoo RK, Sagar L, Shankar T, Palai JB, Sahoo U, Sairam M, Pramanick B, Nath S, Venugopalan VK, Skalický M, Hossain A. Rhizobium as Biotechnological Tools for Green Solutions: An Environment-Friendly Approach for Sustainable Crop Production in the Modern Era of Climate Change. Curr Microbiol 2023; 80:219. [PMID: 37204538 DOI: 10.1007/s00284-023-03317-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Accepted: 04/29/2023] [Indexed: 05/20/2023]
Abstract
Modern and industrialized agriculture enhanced farm output during the last few decades, but it became possible at the cost of agricultural sustainability. Industrialized agriculture focussed only on the increase in crop productivity and the technologies involved were supply-driven, where enough synthetic chemicals were applied and natural resources were overexploited with the erosion of genetic diversity and biodiversity. Nitrogen is an essential nutrient required for plant growth and development. Even though nitrogen is available in large quantities in the atmosphere, it cannot be utilized by plants directly with the only exception of legumes which have the unique ability to fix atmospheric nitrogen and the process is known as biological nitrogen fixation (BNF). Rhizobium, a group of gram-negative soil bacteria, helps in the formation of root nodules in legumes and takes part in the BNF. The BNF has great significance in agriculture as it acts as a fertility restorer in soil. Continuous cereal-cereal cropping system, which is predominant in a major part of the world, often results in a decline in soil fertility, while legumes add nitrogen and improve the availability of other nutrients too. In the present context of the declining trend of the yield of some important crops and cropping systems, it is the need of the hour for enriching soil health to achieve agricultural sustainability, where Rhizobium can play a magnificent role. Though the role of Rhizobium in biological nitrogen fixation is well documented, their behaviour and performance in different agricultural environments need to be studied further for a better understanding. In the article, an attempt has been made to give an insight into the behaviour, performance and mode of action of different Rhizobium species and strains under versatile conditions.
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Affiliation(s)
- Sagar Maitra
- Centurion University of Technology and Management, Paralakhemundi, Odisha, 761 211, India.
| | - Subhashisa Praharaj
- Krishi Vigyan Kendra (Dr. Rajendra Prasad Central Agricultural University, Pusa, 848125, Samastipur, Bihar, India), Madhopur, West Champaran, Bihar, 845454, India
| | - Marian Brestic
- Department of Plant Physiology, Slovak University of Agriculture, Tr. A. Hlinku 2, 949 01, Nitra, Slovakia
- Division of Crop Sciences, Central Research Institute for Dryland Agriculture, Santoshnagar, Hyderabad, Telangana, 500 059, India
| | - Ranjan Kumar Sahoo
- Centurion University of Technology and Management, Paralakhemundi, Odisha, 761 211, India
| | - Lalichetti Sagar
- Centurion University of Technology and Management, Paralakhemundi, Odisha, 761 211, India
| | - Tanmoy Shankar
- Centurion University of Technology and Management, Paralakhemundi, Odisha, 761 211, India
| | - Jnana Bharati Palai
- Centurion University of Technology and Management, Paralakhemundi, Odisha, 761 211, India
| | - Upasana Sahoo
- Centurion University of Technology and Management, Paralakhemundi, Odisha, 761 211, India
| | - Masina Sairam
- Centurion University of Technology and Management, Paralakhemundi, Odisha, 761 211, India
| | - Biswajit Pramanick
- Department of Agronomy, Dr. Rajendra Prasad Central Agricultural University, Pusa, Samastipur, Bihar, 848125, India
| | - Suprava Nath
- Department of Agronomy, College of Agriculture, University of Agricultural Sciences, Bangalore, Karnataka, 560065, India
| | - Visha Kumari Venugopalan
- Division of Crop Sciences, Central Research Institute for Dryland Agriculture, Santoshnagar, Hyderabad, Telangana, 500 059, India
| | - Milan Skalický
- Department of Botany and Plant Physiology, Faculty of Agrobiology, Food, and Natural Resources, Czech University of Life Sciences Prague, Kamycka 129, 165 00, Prague, Czech Republic
| | - Akbar Hossain
- Division of Soil Science, Bangladesh Wheat and Maize Research Institute, Dinajpur, 5200, Bangladesh.
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Samal I, Bhoi TK, Raj MN, Majhi PK, Murmu S, Pradhan AK, Kumar D, Paschapur AU, Joshi DC, Guru PN. Underutilized legumes: nutrient status and advanced breeding approaches for qualitative and quantitative enhancement. Front Nutr 2023; 10:1110750. [PMID: 37275642 PMCID: PMC10232757 DOI: 10.3389/fnut.2023.1110750] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 05/02/2023] [Indexed: 06/07/2023] Open
Abstract
Underutilized/orphan legumes provide food and nutritional security to resource-poor rural populations during periods of drought and extreme hunger, thus, saving millions of lives. The Leguminaceae, which is the third largest flowering plant family, has approximately 650 genera and 20,000 species and are distributed globally. There are various protein-rich accessible and edible legumes, such as soybean, cowpea, and others; nevertheless, their consumption rate is far higher than production, owing to ever-increasing demand. The growing global urge to switch from an animal-based protein diet to a vegetarian-based protein diet has also accelerated their demand. In this context, underutilized legumes offer significant potential for food security, nutritional requirements, and agricultural development. Many of the known legumes like Mucuna spp., Canavalia spp., Sesbania spp., Phaseolus spp., and others are reported to contain comparable amounts of protein, essential amino acids, polyunsaturated fatty acids (PUFAs), dietary fiber, essential minerals and vitamins along with other bioactive compounds. Keeping this in mind, the current review focuses on the potential of discovering underutilized legumes as a source of food, feed and pharmaceutically valuable chemicals, in order to provide baseline data for addressing malnutrition-related problems and sustaining pulse needs across the globe. There is a scarcity of information about underutilized legumes and is restricted to specific geographical zones with local or traditional significance. Around 700 genera and 20,000 species remain for domestication, improvement, and mainstreaming. Significant efforts in research, breeding, and development are required to transform existing local landraces of carefully selected, promising crops into types with broad adaptability and economic viability. Different breeding efforts and the use of biotechnological methods such as micro-propagation, molecular markers research and genetic transformation for the development of underutilized crops are offered to popularize lesser-known legume crops and help farmers diversify their agricultural systems and boost their profitability.
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Affiliation(s)
- Ipsita Samal
- Department of Entomology, Faculty of Agriculture, Sri Sri University, Cuttack, Odisha, India
| | - Tanmaya Kumar Bhoi
- Forest Protection Division, ICFRE-Arid Forest Research Institute, Jodhpur, India
| | - M. Nikhil Raj
- Division of Entomology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Prasanta Kumar Majhi
- Regional Research and Technology Transfer Station, Odisha University of Agriculture and Technology, Keonjhar, Odisha, India
| | - Sneha Murmu
- ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India
| | | | - Dilip Kumar
- ICAR-National Institute of Agricultural Economics and Policy Research, New Delhi, India
| | | | | | - P. N. Guru
- ICAR-Central Institute of Post-Harvest Engineering and Technology, Ludhiana, India
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Kunene S, Odindo AO, Gerrano AS, Mandizvo T. Screening Bambara Groundnut ( Vigna subterranea L. Verdc) Genotypes for Drought Tolerance at the Germination Stage under Simulated Drought Conditions. PLANTS (BASEL, SWITZERLAND) 2022; 11:3562. [PMID: 36559674 PMCID: PMC9788078 DOI: 10.3390/plants11243562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 12/12/2022] [Accepted: 12/13/2022] [Indexed: 06/17/2023]
Abstract
Bambara groundnut (Vigna subterranea L. Verdc) is grown by smallholders and subsistence farmers in the marginal parts of sub-Saharan Africa. This legume is native to Africa and is cultivated throughout semi-arid sub-Saharan Africa. It is hardy and has been recognized as a nutritious food source in times of scarcity. Drought can negatively affect the germination or establishment of seedlings in the early stages of crop growth. Drought can limit the growing season of certain crops and create conditions that encourage the invasion of insects and diseases. Drought can also lead to a lack of crop yield, leading to rising food prices, shortages, and possibly malnutrition in vulnerable populations. A drought-tolerant genotype can be identified at the germination stage of Bambara groundnut by screening for drought-tolerance traits, and this knowledge can be applied to Bambara crop improvement programs to identify drought-tolerant traits during early growth phases. As an osmolyte, polyethylene glycol (PEG 6000) reduced water potential and simulated drought stress in Bambara groundnut seeds of different genotypes. Osmolytes are low-molecular-weight organic compounds that influence biological fluid properties. In this study, 24 Bambara groundnut genotypes were used. Data were collected on seed germination percentage (G%), germination velocity index (GVI), mean germination time (MGT), root dry mass (RDM), root fresh mass (RFM), and seven drought tolerance indices: mean productivity (MP), tolerance index (TOL), geometric mean productivity (GMP), stress susceptibility index (SSI), yield index (YI), yield stability index (YSI), stress tolerance index (STI) as well as seed coat color measurements. The data were applied to the mean observation of genotypes under simulated drought conditions (Ys) and the mean observation of genotypes under controlled conditions (Yp). Germination%, germination velocity index (GVI), mass germination time (MGT), and root fresh mass (RFM) differed significantly (p < 0.001) between the two stress conditions. Bambara genotypes Acc 82 and Acc 96 were found to be the most drought-tolerant.
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Affiliation(s)
- Sithembile Kunene
- School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal, Private Bag X01, Scottsville, Pietermaritzburg 3209, South Africa
| | - Alfred Oduor Odindo
- School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal, Private Bag X01, Scottsville, Pietermaritzburg 3209, South Africa
| | - Abe Shegro Gerrano
- Agricultural Research Council, Vegetables, Industrial and Medicinal Plants, Private Bag X293, Pretoria 0001, South Africa
- Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, MT 59717, USA
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Bag X2046, Mmabatho 2735, South Africa
| | - Takudzwa Mandizvo
- School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal, Private Bag X01, Scottsville, Pietermaritzburg 3209, South Africa
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Ngwenya ZD, Mohammed M, Jaiswal SK, Dakora FD. Phylogenetic relationships among Bradyrhizobium species nodulating groundnut (Arachis hypogea L.), jack bean (Canavalia ensiformis L.) and soybean (Glycine max Merr.) in Eswatini. Sci Rep 2022; 12:10629. [PMID: 35739215 PMCID: PMC9226157 DOI: 10.1038/s41598-022-14455-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Accepted: 06/07/2022] [Indexed: 11/09/2022] Open
Abstract
This study assessed the genetic diversity and phylogenetic relationships of rhizobial isolates obtained from root nodules of groundnut, jack bean and soybean planted in different locations within Eswatini. Seventy-six rhizobial isolates were studied using ERIC-PCR (enterobacterial repetitive intergenic consensus) fingerprinting and PCR amplification of 16S rRNA, housekeeping genes (atpD, dnaK, glnll and rpoB) and symbiotic genes (nifH and nodC). The dendrogram generated from the ERIC-PCR banding patterns grouped the test rhizobial isolates into 16 major clusters (Cluster I-XVI), with three isolates, namely TUTAHeS60, TUTGMeS3 and TUTAHeS127, forming outgroups of Clusters IV, VI and IX, respectively. Furthermore, the 76 test isolates were grouped into 56 ERIC-PCR types at 70% similarity level. The phylogenetic analysis of the 16S rRNA gene and multilocus sequence analysis of four housekeeping (atpD, dnaK, glnII and rpoB) and two symbiotic (nifH and nodC) genes showed that all three legumes (groundnut, jack bean and soybean) were nodulated by bacterial symbionts belonging to the genus Bradyrhizobium, with some isolates exhibiting high divergence from the known reference type strains. The results also showed that B. arachidis, B. iriomotense and B. canariense were the closest type strains to the groundnut isolates, while B. pachyrhizi and B. elkanii were the closest relatives to the bacterial symbionts associated with the nodulation of both jack bean and soybean. This study is the first report to describe of the bacterial symbionts nodulating jack bean in African soils.
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Affiliation(s)
- Zanele D Ngwenya
- Department of Crop Sciences, Tshwane University of Technology, Private Bag X680, Pretoria, 001, South Africa
| | - Mustapha Mohammed
- Department of Chemistry, Tshwane University of Technology, Private Bag X680, Pretoria, 001, South Africa
- Department of Crop Science, University for Development Studies, P.O. Box 1350, Tamale, Ghana
| | - Sanjay K Jaiswal
- Department of Chemistry, Tshwane University of Technology, Private Bag X680, Pretoria, 001, South Africa
| | - Felix D Dakora
- Department of Chemistry, Tshwane University of Technology, Private Bag X680, Pretoria, 001, South Africa.
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Adjei JA, Aserse AA, Yli-Halla M, Ahiabor BDK, Abaidoo RC, Lindstrom K. Phylogenetically diverse Bradyrhizobium genospecies nodulate Bambara groundnut (Vigna subterranea L. Verdc) and soybean (Glycine max L. Merril) in the northern savanna zones of Ghana. FEMS Microbiol Ecol 2022; 98:fiac043. [PMID: 35404419 PMCID: PMC9329091 DOI: 10.1093/femsec/fiac043] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 03/30/2022] [Accepted: 04/08/2022] [Indexed: 11/25/2022] Open
Abstract
A total of 102 bacterial strains isolated from nodules of three Bambara groundnut and one soybean cultivars grown in nineteen soil samples collected from northern Ghana were characterized using multilocus gene sequence analysis. Based on a concatenated sequence analysis (glnII-rpoB-recA-gyrB-atpD-dnaK), 54 representative strains were distributed in 12 distinct lineages, many of which were placed mainly in the Bradyrhizobium japonicum and Bradyrhizobium elkanii supergroups. Twenty-four of the 54 representative strains belonged to seven putative novel species, while 30 were conspecific with four recognized Bradyrhizobium species. The nodA phylogeny placed all the representative strains in the cosmopolitan nodA clade III. The strains were further separated in seven nodA subclusters with reference strains mainly of African origin. The nifH phylogeny was somewhat congruent with the nodA phylogeny, but both symbiotic genes were mostly incongruent with the core housekeeping gene phylogeny indicating that the strains acquired their symbiotic genes horizontally from distantly related Bradyrhizobium species. Using redundancy analysis, the distribution of genospecies was found to be influenced by the edaphic factors of the respective sampling sites. In general, these results mainly underscore the high genetic diversity of Bambara groundnut-nodulating bradyrhizobia in Ghanaian soils and suggest a possible vast resource of adapted inoculant strains.
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Affiliation(s)
- Josephine A Adjei
- Department of Crop and Soil Sciences, Faculty of Agriculture, Kwame Nkrumah University of Science and Technology, PMB, Kumasi, Ghana
- Faculty of Biological and Environmental Sciences, University of Helsinki, FIN-00014 Helsinki, Finland
- Council for Scientific and Industrial Research, Savanna Agricultural Research Institute, PO Box 52, Tamale, Ghana
| | - Aregu A Aserse
- Faculty of Biological and Environmental Sciences, University of Helsinki, FIN-00014 Helsinki, Finland
| | - Markku Yli-Halla
- Department of Agricultural Sciences, University of Helsinki, FIN-00014 Helsinki, Finland
| | - Benjamin D K Ahiabor
- Council for Scientific and Industrial Research, Savanna Agricultural Research Institute, PO Box 52, Tamale, Ghana
| | - Robert C Abaidoo
- Department of Theoretical and Applied Biology, Kwame Nkrumah University of Science and Technology, PMB, Kumasi, Ghana
- International Institute of Tropical Agriculture, PMB 5320, Ibadan, Nigeria
| | - Kristina Lindstrom
- Faculty of Biological and Environmental Sciences, University of Helsinki, FIN-00014 Helsinki, Finland
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Ajilogba CF, Olanrewaju OS, Babalola OO. Improving Bambara Groundnut Production: Insight Into the Role of Omics and Beneficial Bacteria. FRONTIERS IN PLANT SCIENCE 2022; 13:836133. [PMID: 35310649 PMCID: PMC8929175 DOI: 10.3389/fpls.2022.836133] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Accepted: 02/04/2022] [Indexed: 05/05/2023]
Abstract
With the rise in the world population, environmental hazards caused by chemical fertilizers, and a decrease in food supply due to global climate change, food security has become very pertinent. In addition, considerable parts of agriculture lands have been lost to urbanization. It has therefore been projected that at the present rate of population increase coupled with the other mentioned factors, available food will not be enough to feed the world. Hence, drastic approach is needed to improve agriculture output as well as human sustainability. Application of environmentally sustainable approach, such as the use of beneficial microbes, and improved breeding of underutilized legumes are one of the proposed sustainable ways of achieving food security. Microbiome-assisted breeding in underutilized legumes is an untapped area with great capabilities to improve food security. Furthermore, revolution in genomics adaptation to crop improvement has changed the approach from conventional breeding to more advanced genomic-assisted breeding on the host plant and its microbiome. The use of rhizobacteria is very important to improving crop yield, especially rhizobacteria from legumes like Bambara groundnut (BGN). BGN is an important legume in sub-Saharan Africa with high ability to tolerate drought and thrive well in marginalized soils. BGN and its interaction with various rhizobacteria in the soil could play a vital role in crop production and protection. This review focus on the importance of genomics application to BGN and its microbiome with the view of setting a potential blueprint for improved BGN breeding through integration of beneficial bacteria.
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Affiliation(s)
- Caroline Fadeke Ajilogba
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Science, North-West University, Mafikeng, South Africa
- Division of Agrometeorology, Agricultural Research Council, Natural Resources and Engineering, Pretoria, South Africa
| | - Oluwaseyi Samuel Olanrewaju
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Science, North-West University, Mafikeng, South Africa
| | - Olubukola Oluranti Babalola
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Science, North-West University, Mafikeng, South Africa
- *Correspondence: Olubukola Oluranti Babalola,
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Mpai T, Jaiswal SK, Cupido CN, Dakora FD. Ecological adaptation and phylogenetic analysis of microsymbionts nodulating Polhillia, Wiborgia and Wiborgiella species in the Cape fynbos, South Africa. Sci Rep 2021; 11:23614. [PMID: 34880288 PMCID: PMC8654865 DOI: 10.1038/s41598-021-02766-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Accepted: 11/18/2021] [Indexed: 11/09/2022] Open
Abstract
Polhillia, Wiborgia and Wiborgiella species are shrub legumes endemic to the Cape fynbos of South Africa. They have the ability to fix atmospheric N2 when in symbiosis with soil bacteria called ‘rhizobia’. The aim of this study was to assess the morpho-physiological and phylogenetic characteristics of rhizobia associated with the nodulation of Polhillia, Wiborgia and Wiborgiella species growing in the Cape fynbos. The bacterial isolates from root nodules consisted of a mixture of fast and intermediate growers that differed in colony shape and size. The isolates exhibited tolerance to salinity (0.5–3% NaCl) and pH (pH 5–10) and different antibiotic concentrations, and could produce 0.51 to 51.23 µg mL−1 of indole-3-acetic acid (IAA), as well as solubilize tri-calcium phosphate. The ERIC-PCR results showed high genomic diversity in the rhizobial population and grouped them into two major clusters. Phylogenetic analysis based on 16S rRNA, atpD, glnII, gyrB, nifH and nodC gene sequences revealed distinct and novel evolutionary lineages related to the genus Rhizobium and Mesorhizobium, with some of them being very close to Mesorhizobium australicum. However, the phylogenetic analysis of glnII and nifH genes of some isolates showed incongruency.
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Affiliation(s)
- Tiisetso Mpai
- Department of Crop Sciences, Tshwane University of Technology, Private Bag X680, Pretoria, 0001, South Africa
| | - Sanjay K Jaiswal
- Department of Chemistry, Tshwane University of Technology, Arcadia Campus, Private Bag X680, Pretoria, 0001, South Africa.
| | | | - Felix D Dakora
- Department of Chemistry, Tshwane University of Technology, Arcadia Campus, Private Bag X680, Pretoria, 0001, South Africa.
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Ayuba J, Jaiswal SK, Mohammed M, Denwar NN, Dakora FD. Adaptability to local conditions and phylogenetic differentiation of microsymbionts of TGx soybean genotypes in the semi-arid environments of Ghana and South Africa. Syst Appl Microbiol 2021; 44:126264. [PMID: 34601230 DOI: 10.1016/j.syapm.2021.126264] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Revised: 07/30/2021] [Accepted: 09/10/2021] [Indexed: 11/15/2022]
Abstract
The study of the nitrogen fixation and phylogenetic diversity of nodule microsymbionts of grain legumes in many parts of the globe is often carried out in order to identify legume-rhizobia combinations for agricultural sustainability. Several reports have therefore found that rhizobial species diversity is shaped by edapho-climatic conditions that characterize different geographic locations, suggesting that rhizobial communities often possess traits that aid their adaptation to their habitat. In this study, the soybean-nodulating rhizobia from semi-arid savannahs of Ghana and South Africa were evaluated. The authenticated rhizobial isolates were highly diverse based on their colony characteristics, as well as their BOX-PCR profiles and gene sequences. In the 16S rRNA phylogeny, the isolates were placed in the different clades Bradyrhizobium iriomotense and Bradyrhizobium jicamae together with two superclades Bradyrhizobium japonicum and Bradyrhizobium elkanii. The multilocus (atpD, glnII, gyrB, recA) phylogenetic analyses indicated the dominance of Bradyrhizobium diazoefficiens and putative new Bradyrhizobium species in the semi-arid Ghanaian region. The phylogenetic analyses based on the symbiotic genes (nifH and nodC) clustered the test isolates into different symbiovars (sv. glycinearum, sv. retame and sv. sojae). Principal component analysis (PCA) showed that soil factors played a significant role in favoring the occurrence of soybean-nodulating microsymbionts in the tested local conditions. The results suggested that isolates had marked local adaptation to the prevailing conditions in semi-arid regions but further studies are needed to confirm new Bradyrhizobium species.
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Affiliation(s)
- Jalilatu Ayuba
- Department of Crop Sciences, Tshwane University of Technology, Pretoria, South Africa; CSIR-Savanna Agric Research Institute, Tamale, Ghana; Department of Sustainable Agriculture, Tamale Technical University, Tamale, Ghana
| | - Sanjay K Jaiswal
- Department of Chemistry, Tshwane University of Technology, Arcadia Campus Pretoria, South Africa.
| | - Mustapha Mohammed
- Department of Chemistry, Tshwane University of Technology, Arcadia Campus Pretoria, South Africa; Department of Crop Science, University for Development Studies, Tamale, Ghana
| | | | - Felix D Dakora
- Department of Chemistry, Tshwane University of Technology, Arcadia Campus Pretoria, South Africa.
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Dlamini ST, Jaiswal SK, Mohammed M, Dakora FD. Studies of Phylogeny, Symbiotic Functioning and Ecological Traits of Indigenous Microsymbionts Nodulating Bambara Groundnut (Vigna subterranea L. Verdc) in Eswatini. MICROBIAL ECOLOGY 2021; 82:688-703. [PMID: 33606087 DOI: 10.1007/s00248-021-01684-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Accepted: 01/06/2021] [Indexed: 06/12/2023]
Abstract
Rhizobial microsymbionts of grain legumes are ubiquitous in soils and exhibit a wide range of diversity with respect to colony morphology, genetic variability, biochemical characteristics, and phylogenetic relationships. This study assessed the phylogenetic positions of rhizobial microsymbionts of Bambara groundnut from Eswatini exhibiting variations in morpho-physiology, adaptive characteristics, and N2-fixing efficiency. The isolates' ERIC-PCR profiles revealed the presence of high genetic variation among them. These test isolates also exhibited differences in pH tolerance and IAA production. Multilocus sequence analysis based on the 16S rRNA, atpD, glnII, gyrB, and recA gene sequences of representative test isolates closely aligned them to the type strains of Bradyrhizobium arachidis, B. manausense, B. guangdongense, B. elkanii, and B. pachyrhizi. However, some isolates showed a high divergence from the known reference type strains, indicating that they may represent species yet to be properly characterized and described. Functional characterization in the glasshouse revealed that most of the isolates from the contrasting Agro-ecologies of Eswatini were efficient in N2 fixation, and therefore elicited greater stomatal conductance and photosynthetic rates in the homologous Bambara groundnut. Of the 75 isolates tested, 51% were more effective than the commercial Bradyrhizobium sp. strain CB756, with relative symbiotic effectiveness ranging from 138 to 308%. The findings of this study indicated that the analysis of housekeeping genes and functional traits of Bambara-nodulating microsymbionts can provide a clear view for understanding and predicting rhizobial community structure across environmental gradients.
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Affiliation(s)
- Sibusiso T Dlamini
- Department of Crop Sciences, Tshwane University of Technology, Pretoria, South Africa
| | - Sanjay K Jaiswal
- Department of Chemistry, Tshwane University of Technology, Private Bag X680, Pretoria, 0001, South Africa.
| | - Mustapha Mohammed
- Department of Crop Sciences, Tshwane University of Technology, Pretoria, South Africa
- Department of Chemistry, Tshwane University of Technology, Private Bag X680, Pretoria, 0001, South Africa
| | - Felix D Dakora
- Department of Chemistry, Tshwane University of Technology, Private Bag X680, Pretoria, 0001, South Africa.
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Simbine MG, Mohammed M, Jaiswal SK, Dakora FD. Functional and genetic diversity of native rhizobial isolates nodulating cowpea (Vigna unguiculata L. Walp.) in Mozambican soils. Sci Rep 2021; 11:12747. [PMID: 34140555 PMCID: PMC8211668 DOI: 10.1038/s41598-021-91889-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Accepted: 05/26/2021] [Indexed: 02/05/2023] Open
Abstract
Identification and symbiotic characterization of indigenous rhizobial isolates are the basis for inoculant formulations needed for sustainable grain legume production. This study screened for morpho-genetic diversity of indigenous cowpea nodulating rhizobia in farmers' fields across two contrasting agroecological zones of Northern Mozambique. The photosynthetic function induced by the isolates in their homologous cowpea was assessed. The results showed high genetic variability among the isolates based on morphology and ERIC-PCR fingerprinting. The trap cowpea genotype did not influence the diversity of isolates collected from the two different agroecologies, suggesting that the cowpea-rhizobia compatibility may be conserved at species level. Phylogenetic analysis of the 16S rRNA gene assigned representative rhizobial isolates to species in the Bradyrhizobium and Rhizobium genera, with some isolates showing high divergence from the known reference type strains. The isolates from both agroecologies highly varied in the number and biomass of nodules induced in the homologous cowpea, resulting in variable plant growth and photosynthetic activities. A total of 72% and 83% of the isolates collected from the agroecological zones 7 and 8 were respectively classified as highly effective candidates with > 80% relative effectiveness compared to plants fertilized with nitrate, indicating that elite native strains populated the studied soils. Moreover, the top 25% of high N2-fixing isolates from the two agroecologies recorded relative effectiveness ranging from 115 to 154%, values higher than the effectiveness induced by the commercial Bradyrhizobium sp. strain CB756. These strains are considered as having potential for use in inoculant formulations. However, future studies should be done to assess the ecologically adaptive traits and symbiotic performance under field conditions.
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Affiliation(s)
- Margarida G. Simbine
- grid.412810.e0000 0001 0109 1328Department of Crop Sciences, Tshwane University of Technology, Private Bag X680, Pretoria, 0001 South Africa
| | - Mustapha Mohammed
- grid.412810.e0000 0001 0109 1328Department of Crop Sciences, Tshwane University of Technology, Private Bag X680, Pretoria, 0001 South Africa ,grid.442305.40000 0004 0441 5393Department of Crop Science, University for Development Studies, P.O. Box TL1882, Tamale, Ghana ,grid.412810.e0000 0001 0109 1328Department of Chemistry, Tshwane University of Technology, Arcadia campus, 175 Nelson Mandela Drive, Private Bag X680, Pretoria, 0001 South Africa
| | - Sanjay K. Jaiswal
- grid.412810.e0000 0001 0109 1328Department of Chemistry, Tshwane University of Technology, Arcadia campus, 175 Nelson Mandela Drive, Private Bag X680, Pretoria, 0001 South Africa
| | - Felix D. Dakora
- grid.412810.e0000 0001 0109 1328Department of Chemistry, Tshwane University of Technology, Arcadia campus, 175 Nelson Mandela Drive, Private Bag X680, Pretoria, 0001 South Africa
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Simbine MG, Jaiswal SK, Dakora FD. Diverse symbiovars nodulating cowpea (Vigna unguiculata L. Walp.) in highly adaptable agro-ecological zones in Mozambique. Syst Appl Microbiol 2021; 44:126220. [PMID: 34126328 DOI: 10.1016/j.syapm.2021.126220] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Revised: 05/19/2021] [Accepted: 05/19/2021] [Indexed: 02/03/2023]
Abstract
The presence of effective microsymbionts in the soil and their compatibility with the host plant are the key determinants to the N2 fixation process. In Sub-Saharan Africa, nitrogen fixation in locally adapted cowpea and the distribution of their symbiovars are not well understood. The Aim of the study was to assess the distribution and symbiotic phylogenetic position of cowpea microsymbionts. Root nodules were sampled from various cowpea genotypes planted in Agro-Ecological Zone 7 and 8 (AEZ 7 and AEZ 8). Root-nodule bacteria were isolated and their molecular characterization was conducted. Physicochemical properties of soil were recorded. Enterobacterial Repetitive Intergenic Consensus (ERIC) distribution patterns in rhizobial genomes resulted in genetically diverse rhizobial population in Northern Mozambique. Principal component analysis showed that location-specific soil environment determined the presence of particular microsymbionts. Based on 16S rRNA and symbiotic gene analysis many diverse symbiovars were found in Mozambican soils. With few discrepancies, the results further confirmed the coevolution of the nifH, nodD, nodC and nodY/K genes, which was indicative of natural events such as vertical/horizontal gene transfer. The results suggested that ecological and phylogenetic studies of the microsymbionts are necessary to better reflect symbiovar identification and the ecological adaptation of the cowpea-nodulating rhizobial community.
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Affiliation(s)
| | - Sanjay K Jaiswal
- Department of Chemistry, Tshwane University of Technology, South Africa.
| | - Felix D Dakora
- Department of Chemistry, Tshwane University of Technology, South Africa.
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Bambara Groundnut (Vigna subterranea L. Verdc): A Crop for the New Millennium, Its Genetic Diversity, and Improvements to Mitigate Future Food and Nutritional Challenges. SUSTAINABILITY 2021. [DOI: 10.3390/su13105530] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
The world’s food and agricultural schemes have gradually fallen into an alarming state due to challenges such as high population birth rates, diverse agro-climatic zones, a lack of measures to counter global warming, severe practices of sole-culture cultivation, and asset reduction. A very high dependency on limited staple food crops is associated with repetitious diets, deprivation of food, and shortages of trace minerals, which often causes dietary sicknesses. To ensure nutritious diets worldwide, a real-world and justifiable scheme is provided to garner extra attention towards variation in both agriculture/farming approaches and food habits. The EAT-Lancet statement emphasized an increase in agri-based diets as a way of attaining global generational health. Enlarging neglected crops with plenty of genomic stocks and potentially profitable attributes is a solution that could address food and nutritional security concerns. Bambara groundnut is one such imperative and neglected legume crop that contributes positively to improving global food and nutrient safety. As a “complete food”, this crop has recently been treated as a new millennium crop, and furthermore, it is more adjusted to poor soil and climatic conditions than other dominant crops. Bambara groundnut is a repository of vital nutrients that provides carbohydrates, crucial amino acids, proteins, and energy as well as minerals and vitamins to developed and low-income countries where animal proteins are not readily available. This review explores the potential of Bambara groundnut in ensuring food and nutrient security; its variables, production, processing, nutrient values, role in reducing the nutritional gap, and diverse uses; and attempts in improving its traits. To strengthen food production, an agricultural revolution is required for underutilized crop species to feed the ever-expanding population in the world. Henceforth, advanced plant-breeding procedures, such as next-generation breeding techniques, various molecular tools, TILLING, Eco-TILLING, proteomics, genomics, and transcriptomics (which has been used for major crops), also need to be practiced to intensify production. To boost productivity and to feed the most starved and malnourished populations of the world, it is assumed that the application of modern techniques will play a vital role in the advancement of the underutilized Bambara groundnut.
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Liu G, Liu X, Liu W, Gao K, Chen X, Wang ET, Zhao Z, Du W, Li Y. Biodiversity and Geographic Distribution of Rhizobia Nodulating With Vigna minima. Front Microbiol 2021; 12:665839. [PMID: 34017318 PMCID: PMC8129581 DOI: 10.3389/fmicb.2021.665839] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Accepted: 03/22/2021] [Indexed: 11/13/2022] Open
Abstract
Vigna minima is a climbing annual plant widely distributed in barren wilderness, grass land, and shrub bush of China and other countries such as Japan. However, the rhizobia nodulating with this plant has never been systematically studied. In order to reveal the biodiversity of nodulating rhizobia symbiosis with V. minima, a total of 874 rhizobium isolates were obtained from root nodules of the plant spread in 11 sampling sites of Shandong Peninsula, China, and they were designated as 41 haplotypes in the genus Bradyrhizobium based upon recA sequence analyses. By multilocus sequence analysis (MLSA) of five housekeeping genes (dnaK, glnII, gyrB, recA, and rpoB), the 41 strains representing different recA haplotypes were classified into nine defined species and nine novel genospecies. Bradyrhizobium elkanii, Bradyrhizobium ferriligni, and Bradyrhizobium pachyrhizi were the predominant and universally distributed groups. The phylogeny of symbiotic genes of nodC and nifH showed similar topology and phylogenetic relationships, in which all the representative strains were classified into two clades grouped with strains nodulating with Vigna spp., demonstrating that Vigna spp. shared common nodulating groups in the natural environment. All the representative strains formed nodules with V. minima in a nodulation test performed in green house conditions. The correlation between V. minima nodulating rhizobia and soil characteristics analyzed by CANOCO indicates that available nitrogen, total nitrogen, and organic carbon in the soil samples were the main factors affecting the distribution of rhizobia isolated in this study. This study systematically uncovered the biodiversity and distribution characteristics of V. minima nodulating rhizobia for the first time, which provided novel information for the formation of the corresponding rhizobium community.
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Affiliation(s)
- Guohua Liu
- College of Life Science, Yantai University, Yantai, China
| | - Xiaoling Liu
- College of Life Science, Yantai University, Yantai, China
| | - Wei Liu
- Key Laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China
| | - Kangning Gao
- College of Resources and Environment, Shijiazhuang University, Shijiazhuang, China
| | - Xiaoli Chen
- The Fruit Trees Work Station of Penglai, Yantai, China
| | - En-Tao Wang
- Departamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, Mexico
| | - Zhenjun Zhao
- College of Life Science, Yantai University, Yantai, China
| | - Wenxiao Du
- College of Life Science, Yantai University, Yantai, China
| | - Yan Li
- College of Life Science, Yantai University, Yantai, China.,Key Laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China
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Jaiswal SK, Mohammed M, Ibny FYI, Dakora FD. Rhizobia as a Source of Plant Growth-Promoting Molecules: Potential Applications and Possible Operational Mechanisms. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2021. [DOI: 10.3389/fsufs.2020.619676] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
The symbiotic interaction between rhizobia and legumes that leads to nodule formation is a complex chemical conversation involving plant release of nod-gene inducing signal molecules and bacterial secretion of lipo-chito-oligossacharide nodulation factors. During this process, the rhizobia and their legume hosts can synthesize and release various phytohormones, such as IAA, lumichrome, riboflavin, lipo-chito-oligossacharide Nod factors, rhizobitoxine, gibberellins, jasmonates, brassinosteroids, ethylene, cytokinins and the enzyme 1-aminocyclopropane-1-carboxylate (ACC) deaminase that can directly or indirectly stimulate plant growth. Whereas these attributes may promote plant adaptation to various edapho-climatic stresses including the limitations in nutrient elements required for plant growth promotion, tapping their full potential requires understanding of the mechanisms involved in their action. In this regard, several N2-fixing rhizobia have been cited for plant growth promotion by solubilizing soil-bound P in the rhizosphere via the synthesis of gluconic acid under the control of pyrroloquinoline quinone (PQQ) genes, just as others are known for the synthesis and release of siderophores for enhanced Fe nutrition in plants, the chelation of heavy metals in the reclamation of contaminated soils, and as biocontrol agents against diseases. Some of these metabolites can enhance plant growth via the suppression of the deleterious effects of other antagonistic molecules, as exemplified by the reduction in the deleterious effect of ethylene by ACC deaminase synthesized by rhizobia. Although symbiotic rhizobia are capable of triggering biological outcomes with direct and indirect effects on plant mineral nutrition, insect pest and disease resistance, a greater understanding of the mechanisms involved remains a challenge in tapping the maximum benefits of the molecules involved. Rather than the effects of individual rhizobial or plant metabolites however, a deeper understanding of their synergistic interactions may be useful in alleviating the effects of multiple plant stress factors for increased growth and productivity.
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