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Gong W, Proud C, Vinarao R, Fukai S, Mitchell J. Genome-Wide Association Study of Early Vigour-Related Traits for a Rice ( Oryza sativa L.) japonica Diversity Set Grown in Aerobic Conditions. BIOLOGY 2024; 13:261. [PMID: 38666873 PMCID: PMC11048181 DOI: 10.3390/biology13040261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Revised: 04/02/2024] [Accepted: 04/12/2024] [Indexed: 04/28/2024]
Abstract
Aerobic rice production is a relatively new system in which rice is direct-seeded and grown in non-flooded but well-watered conditions to improve water productivity. Early vigour-related traits are likely to be important in aerobic conditions. This study aimed to identify quantitative trait loci (QTL) and candidate genes associated with early vigour-related traits in aerobic conditions using a japonica rice diversity set. Field experiments and glasshouse experiments conducted under aerobic conditions revealed significant genotypic variation in early vigour-related traits. Genome-wide association analysis identified 32 QTL associated with early vigour-related traits. Notably, two QTL, qAEV1.5 and qAEV8, associated with both early vigour score and mesocotyl length, explained up to 22.1% of the phenotypic variance. In total, 23 candidate genes related to plant growth development and abiotic stress response were identified in the two regions. This study provides novel insights into the genetic basis of early vigour under aerobic conditions. Validation of identified QTL and candidate genes in different genetic backgrounds is crucial for future studies. Moreover, testing the effect of QTL on yield under different environments would be valuable. After validation, these QTL and genes can be considered for developing markers in marker-assisted selection for aerobic rice production.
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Affiliation(s)
- Wenliu Gong
- School of Agriculture and Food Sustainability, The University of Queensland, Brisbane, QLD 4072, Australia (J.M.)
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Gfeller V, Thoenen L, Erb M. Root-exuded benzoxazinoids can alleviate negative plant-soil feedbacks. THE NEW PHYTOLOGIST 2024; 241:2575-2588. [PMID: 38087806 DOI: 10.1111/nph.19401] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Accepted: 10/23/2023] [Indexed: 02/03/2024]
Abstract
Plants can suppress the growth of other plants by modifying soil properties. These negative plant-soil feedbacks are often species-specific, suggesting that some plants possess resistance strategies. However, the underlying mechanisms remain largely unknown. Here, we investigated whether benzoxazinoids, a class of dominant secondary metabolites that are exuded into the soil by maize and other cereals, allow maize plants to cope with plant-soil feedbacks. We find that three out of five tested crop species reduce maize (Zea mays L.) performance via negative plant-soil feedbacks relative to the mean across species. This effect is partially alleviated by the capacity of maize plants to produce benzoxazinoids. Soil complementation with purified benzoxazinoids restores the protective effect for benzoxazinoid-deficient mutants. Sterilization and reinoculation experiments suggest that benzoxazinoid-mediated protection acts via changes in soil biota. Substantial variation of the protective effect between experiments and soil types illustrates context dependency. In conclusion, exuded plant secondary metabolites allow plants to cope with plant-soil feedbacks. These findings expand the functional repertoire of plant secondary metabolites and reveal a mechanism by which plants can resist negative effects of soil feedbacks. The uncovered phenomenon may represent a promising avenue to stabilize plant performance in crop rotations.
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Affiliation(s)
- Valentin Gfeller
- Institute of Plant Sciences, University of Bern, 3013, Bern, Switzerland
- Department of Crop Sciences, Research Institute of Organic Agriculture (FiBL), 5070, Frick, Switzerland
| | - Lisa Thoenen
- Institute of Plant Sciences, University of Bern, 3013, Bern, Switzerland
| | - Matthias Erb
- Institute of Plant Sciences, University of Bern, 3013, Bern, Switzerland
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Oo AZ, Asai H, Win KT, Marui J, Saito H. Seed phytic acid concentration affects rice seedling vigor irrespective of soil phosphorus bioavailability. PHYSIOLOGIA PLANTARUM 2023; 175:e13913. [PMID: 37043305 DOI: 10.1111/ppl.13913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 03/15/2023] [Accepted: 04/07/2023] [Indexed: 06/27/2023]
Abstract
Rice with a black-colored pericarp (hereafter, black rice) is well-known as an antioxidant-rich food, but a high grain phytic acid (PA) concentration affects its nutritional quality. However, phytic acid helps improve seedling vigor, which is crucial for enhancing subsequent plant growth. This study investigated the effect of seed phytic acid concentration in black rice on seedling vigor compared to the effects on white rice. In the first experiment, three phytic acid concentrations in the seeds of black rice, low (LPA, 15.5 mg g-1 per seed), medium (MPA, 24.7 mg g-1 per seed), and high (HPA, 35.4 mg g-1 per seed) were tested for seedling vigor in phosphorus-deficient soils. The HPA seedlings showed substantially increased seedling vigor and shoot P uptake due to early root development and enhanced physiological processes. LPA grown seedlings showed increased ethylene production in response to P stress, which is the main physiological mechanism modulating seedling growth under P stress conditions. In the second experiment, the three phytic acid concentrations in black and white rice seeds were tested under low and high soil P conditions. Again, LPA seedlings showed significantly reduced seedling vigor in both rice varieties in P-deficient soils. Interestingly, seed phytic acid and external P application had an additive effect on seedling vigor, suggesting that the combined effect further improved seedling growth. Our results reveal that black rice seeds with a HPA concentration can be used as a seed source for planting in P-deficient ecosystems for rice plants as they can increase seedling vigor and subsequent growth, thus reducing dependence on finite P resources.
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Affiliation(s)
- Aung Zaw Oo
- Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki, Japan
| | - Hidetoshi Asai
- Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki, Japan
| | - Khin Thuzar Win
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, Tsukuba, Japan
| | - Junichiro Marui
- Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki, Japan
| | - Hiroki Saito
- Tropical Agricultural Research Fronts, Japan International Research Center for Agricultural Sciences, Ishigaki, Okinawa, Japan
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Taratima W, Chuanchumkan C, Maneerattanarungroj P, Trunjaruen A, Theerakulpisut P, Dongsansuk A. Effect of Heat Stress on Some Physiological and Anatomical Characteristics of Rice (Oryza sativa L.) cv. KDML105 Callus and Seedling. BIOLOGY 2022; 11:biology11111587. [PMID: 36358287 PMCID: PMC9687333 DOI: 10.3390/biology11111587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 10/22/2022] [Accepted: 10/25/2022] [Indexed: 11/05/2022]
Abstract
Simple Summary Climate change is currently threatening agriculture all around the world, resulting in a lack of water and restricting the growth of plants, especially rice. Rice production decreases with the increase in temperature. An improvement in fundamental knowledge is necessary to comprehend plant adaptation mechanisms as responses to heat stress. Physiological and anatomical responses of Khao Dawk Mali 105 (KDML105) rice to artificial heat stress were studied. Our findings offer useful data for projects aimed at improving heat stress tolerance in rice to enhance long-term global food security. Abstract Global warming is a serious problem, with significant negative impacts on agricultural productivity. To better understand plant anatomical adaptation mechanisms as responses to heat stress, improved basic knowledge is required. This research studied the physiological and anatomical responses of Khao Dawk Mali 105 (KDML105) to artificial heat stress. Dehusked seeds were sterilized and cultured on Murashige and Skoog (MS) medium, supplemented with 3 mg/L 2,4-Dichlorophenoxyacetic acid (2,4-D) for callus induction. The cultures were maintained at 25 °C and 35 °C for 4 weeks, while the other culture was treated with heat shock at 42 °C for 1 week before further incubation at 25 °C for 3 weeks. Results revealed that elevated temperatures (35 °C and 42 °C) adversely impacted seedling growth. Plant height, root length, leaf number per plant, fresh and dry weight, chlorophyll a, chlorophyll b and total chlorophyll content decreased after heat stress treatment, while malondialdehyde (MDA) and electrolyte leakage percentage significantly increased, compared to the control. Heat stress induced ROS accumulation, leading to lipid peroxidation and membrane instability. Principal component analysis (PCA) and hierarchical cluster analysis (HCA) results also confirmed negative correlations between MDA, electrolyte leakage and other parameters. MDA content and electrolyte leakage are effective indicators of heat stress in rice. Surface anatomical responses of rice seedlings to heat stress were studied but significant alterations were not observed, and heat stress had no significant negative effects on KDML105 calli. Size and mass of calli increased because heat stress stimulated gene expression that induced thermotolerance. Our results provide useful information for rice breeding and heat stress tolerance programs to benefit long-term global food security.
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Affiliation(s)
- Worasitikulya Taratima
- Department of Biology, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand
- Salt Tolerant Rice Research Group, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand
- Correspondence: or ; Tel.: +66-99459-9622
| | - Chantima Chuanchumkan
- Department of Biology, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand
| | | | - Attachai Trunjaruen
- Department of Biology, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand
- Salt Tolerant Rice Research Group, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand
| | - Piyada Theerakulpisut
- Department of Biology, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand
- Salt Tolerant Rice Research Group, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand
| | - Anoma Dongsansuk
- Department of Agronomy, Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002, Thailand
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Adhikary S, Biswas B, Chakraborty D, Timsina J, Pal S, Chandra Tarafdar J, Banerjee S, Hossain A, Roy S. Seed priming with selenium and zinc nanoparticles modifies germination, growth, and yield of direct-seeded rice (Oryza sativa L.). Sci Rep 2022; 12:7103. [PMID: 35501374 PMCID: PMC9061837 DOI: 10.1038/s41598-022-11307-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Accepted: 04/14/2022] [Indexed: 11/09/2022] Open
Abstract
Direct-seeded rice (DSR) seeds are often exposed to multiple environmental stresses in the field, leading to poor emergence, growth and productivity. Appropriate seed priming agents may help to overcome these challenges by ensuring uniform seed germination, and better seedling stand establishment. To examine the effectiveness of sodium selenite (Na-selenite), sodium selenate (Na-selenate), zinc oxide nanoparticles (ZnO-NPs), and their combinations as priming agents for DSR seeds, a controlled pot experiment followed by a field experiment over two consecutive years was conducted on a sandy clay loam soil (Inceptisol) in West Bengal, India. Priming with combinations of all priming agents had advantages over the hydro-priming treatment (control). All the combinations of the three priming agents resulted in the early emergence of seedlings with improved vigour. In the field experiment, all the combinations increased the plant chlorophyll, phenol and protein contents, leaf area index and duration, crop growth rate, uptake of nutrients (N, P, K, B, Zn and Si), and yield of DSR over the control. Our findings suggest that seed priming with the combination of ZnO-NPs, Na-selenite, and Na-selenate could be a viable option for the risk mitigation in DSR.
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Affiliation(s)
- Saju Adhikary
- Department of Agronomy, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, West Bengal, 741 252, India
| | - Benukar Biswas
- Department of Agronomy, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, West Bengal, 741 252, India.
| | - Debashis Chakraborty
- Division of Agricultural Physics, Indian Agricultural Research Institute, New Delhi, 110 012, India.
| | - Jagadish Timsina
- Global Evergreening Alliance, 1 Vision Drive, East Burwood, Melbourne, VIC, 3151, Australia.
- Institute for Study and Development Worldwide, Sydney, NSW, Australia.
| | - Srikumar Pal
- Department of Agricultural Biochemistry, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, West Bengal, 741 252, India
| | - Jagadish Chandra Tarafdar
- Ex-Scientist, Central Arid Zone Research Institute, 17E/361A, C. H. B., Jodhpur, 342008, India
- 32/E/2/1, BanamalipurBarasat, Kolkata, West Bengal, 700124, India
| | - Saon Banerjee
- Department of Agricultural Physics and Meteorology, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, West Bengal, 741 252, India
| | - Akbar Hossain
- Bangladesh Wheat and Maize Research Institute, Dinajpur, 5200, Bangladesh
| | - Sovan Roy
- Department of Science & Technology and Biotechnology, Vigyan Chetana Bhavan, Kolkata, West Bengal, 700064, India
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Song Q, Van Rie J, Den Boer B, Galle A, Zhao H, Chang T, He Z, Zhu XG. Diurnal and Seasonal Variations of Photosynthetic Energy Conversion Efficiency of Field Grown Wheat. FRONTIERS IN PLANT SCIENCE 2022; 13:817654. [PMID: 35283909 PMCID: PMC8914475 DOI: 10.3389/fpls.2022.817654] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 01/17/2022] [Indexed: 05/22/2023]
Abstract
Improving canopy photosynthetic light use efficiency and energy conversion efficiency (ε c ) is a major option to increase crop yield potential. However, so far, the diurnal and seasonal variations of canopy light use efficiency (LUE) and ε c are largely unknown due to the lack of an efficient method to estimate ε c in a high temporal resolution. Here we quantified the dynamic changes of crop canopy LUE and ε c during a day and a growing season with the canopy gas exchange method. A response curve of whole-plant carbon dioxide (CO2) flux to incident photosynthetically active radiation (PAR) was further used to calculate ε c and LUE at a high temporal resolution. Results show that the LUE of two wheat cultivars with different canopy architectures at five stages varies between 0.01 to about 0.05 mol CO2 mol-1 photon, with the LUE being higher under medium PAR. Throughout the growing season, the ε c varies from 0.5 to 3.7% (11-80% of the maximal ε c for C3 plants) with incident PAR identified as a major factor controlling variation of ε c . The estimated average ε c from tillering to grain filling stages was about 2.17%, i.e., 47.2% of the theoretical maximal. The estimated season-averaged radiation use efficiency (RUE) was 1.5-1.7 g MJ-1, which was similar to the estimated RUE based on biomass harvesting. The large variations of LUE and ε c imply a great opportunity to improve canopy photosynthesis for greater wheat biomass and yield potential.
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Affiliation(s)
- Qingfeng Song
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Jeroen Van Rie
- BASF Belgium Coordination Center – Innovation Center Gent, Ghent, Belgium
| | - Bart Den Boer
- BASF Belgium Coordination Center – Innovation Center Gent, Ghent, Belgium
| | - Alexander Galle
- BASF Belgium Coordination Center – Innovation Center Gent, Ghent, Belgium
| | - Honglong Zhao
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Tiangen Chang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
| | - Zhonghu He
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Xin-Guang Zhu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
- *Correspondence: Xin-Guang Zhu,
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