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Matra DD, Adrian M, Karmanah, Kusuma J, Duminil J, Sobir, Poerwanto R. Dataset from de novo transcriptome assembly of Myristica fatua leaves using MinION nanopore sequencer. Data Brief 2022; 46:108838. [PMID: 36593766 PMCID: PMC9803912 DOI: 10.1016/j.dib.2022.108838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Revised: 12/07/2022] [Accepted: 12/12/2022] [Indexed: 12/23/2022] Open
Abstract
Myristica fatua is a tropical fruit tree species originating from Indonesia. Very few genomic resources are available for the species. We developed a full-length transcriptome assembly using long-read sequencing (MinION Nanopore technology) and produced 4.3 million reads (3.5 G of bases). The assembled full-length transcript was constructed using the RATTLE program and assembled 21,098 transcripts. The transcript ranged from 201 - 14,174 bp, and N50 was 2,017 bp. The transcripts were annotated with the UNIPROT database using BlastX. The functional annotation was performed using Blast2go software. The 8,445 microsatellite motif-containing contigs were identified. The raw reads are deposited in the ENA (European Nucleotide Archive) with ENA experiment accession number ERX6798613.
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Affiliation(s)
- Deden Derajat Matra
- Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia,Corresponding author. @matradeden
| | - M Adrian
- Agronomy and Horticulture Study Program, Graduate School of IPB University, Bogor, Indonesia
| | - Karmanah
- Agrotechnology Study Program, Faculty of Agriculture, Nusa Bangsa University, Bogor, Indonesia
| | - Jakty Kusuma
- Department of Plant Science, Politeknik Negeri Lampung, Lampung, Indonesia,DIADE, IRD, Univ Montpellier, CIRAD, Montpellier, France
| | - Jérôme Duminil
- DIADE, IRD, Univ Montpellier, CIRAD, Montpellier, France
| | - Sobir
- Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia
| | - Roedhy Poerwanto
- Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Bogor, Indonesia
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Mahdi N, Ridha MR, Setiawan D, Praristiya MRS, Rahayu N, Atmaja BP. Bio-efficacy of Mangifera leaf extracts on mortality of Aedes aegypti and inhibition of egg hatching. Vet World 2022; 15:1753-1758. [PMID: 36185534 PMCID: PMC9394156 DOI: 10.14202/vetworld.2022.1753-1758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Accepted: 06/01/2022] [Indexed: 11/16/2022] Open
Abstract
Background and Aim: To develop an environmentally friendly alternative to mosquito larvicides for vegetables, leaf extracts of Mangifera laurina, Mangifera casturi, Mangifera indica, Mangifera odorata, Mangifera caesia, and Mangifera foetida were prepared. This study aimed to determine the biological efficacy of several Mangifera leaf extracts on the mortality of Aedes aegypti mosquito and the inhibition of egg hatching.
Materials and Methods: Extraction was performed in an organic solvent (methanol) using a Soxhlet extractor. The larvicidal potential of six leaves of Mangifera essential oil was evaluated against the third instar larvae of A. aegypti at concentrations of 1500, 2000, 3000, and 5000 ppm using the World Health Organization protocol. After Probit analysis, the 48 h LC50 and LC90 values of the essential oils were determined. The inhibitory effect on egg hatching was also tested at 160, 320, 480, and 640 ppm.
Results: The extraction of essential oils from several Mangifera species had excellent larvicidal activity and inhibitory activity against A. aegypti egg hatching. The LC50/LC90 values were: M. casturi, 241/1964 ppm; M. laurina, 2739/4035 ppm; and M. caesia, 1831/2618 ppm. The inhibitory effect on hatching was 78% for M. foetida, 70% for M. caesia, and 59% for M. casturi.
Conclusion: The test results indicate the potential of some Mangifera species for use as larvicides and inhibitors of egg hatching; thus, they have the potential to control A. aegypti in the early stages of development.
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Affiliation(s)
- Nur Mahdi
- Pharmacy Program, College of Health Darul Azhar, Tanah Bumbu, South Kalimantan, Indonesia
| | - Muhammad Rasyid Ridha
- Organization Research for Health, The National Research and Innovation Agency (BRIN-Indonesia), Cibinong, West Java, Indonesia
| | - Deni Setiawan
- Pharmacy Program, Lambung Mangkurat University, Banjarbaru, South Kalimantan, Indonesia
| | | | - Nita Rahayu
- Organization Research for Health, The National Research and Innovation Agency (BRIN-Indonesia), Cibinong, West Java, Indonesia
| | - Bayu Purnama Atmaja
- Nurse Program, College of Health Darul Azhar, Tanah Bumbu, South Kalimantan, Indonesia
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Effect of Feed Supplement Containing Dried Kratom Leaves on Apparent Digestibility, Rumen Fermentation, Serum Antioxidants, Hematology, and Nitrogen Balance in Goats. FERMENTATION-BASEL 2022. [DOI: 10.3390/fermentation8030131] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The objectives of the present study were to examine the influence of supplementation with dried kratom leaf (DKTL) on the performance, hematology, and nitrogen balance in goats. Four 12-month-old male crossbred (Thai Native x Anglo Nubian) goats with an initial body weight (BW) of 24.63 ± 0.95 kg were allocated randomly to receive four different levels of DKTL using a 4 × 4 Latin square design. The DKTL was added to a total mixed ration (TMR) diet with doses of 0, 2.22, 4.44, and 6.66 g/day to investigate the treatment’s efficacy. The DKTL was high in secondary metabolites, including mitragynine, total phenolics, total tannins, flavonoids, and saponins. There were quadratic effects on total DMI in terms of kg/day (p = 0.04), %BW (p = 0.05), and g/kg BW.75 (p = 0.02). DKTL increased apparent digestibility with quadratic effects (DM; p = 0.01, OM; p = 0.01, CP; p = 0.04, NDF; p = 0.01, and ADF; p = 0.01). The pH value was within the rumen’s normal pH range, whereas NH3-N and BUN concentrations were lower with DKTL supplementation, and also reduced cholesterol (CHOL, p = 0.05) and low-density lipoprotein (LDL, p = 0.01). The protozoa population decreased linearly as DKTL levels increased (p < 0.01), whereas Fibrobacter succinogenes increased quadratically at 0 h (p = 0.02), and mean values increased linearly (p < 0.01). The average value of acetic acid (C2) and methane production (CH4) decreased linearly (p < 0.05) when DKLT was added to the diet, whereas the quantity of propionic acid (C3) increased linearly (p = 0.01). Our results indicate that DKTL could be a great alternative supplement for goat feed. We believe that DKTL could provide opportunities to assist the goat meat industry in fulfilling the demands of health-conscious consumers.
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