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For: Havecker ER, Voytas DF. The soybean retroelement SIRE1 uses stop codon suppression to express its envelope-like protein. EMBO Rep 2003;4:274-7. [PMID: 12634845 PMCID: PMC1315901 DOI: 10.1038/sj.embor.embor773] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2002] [Revised: 01/08/2003] [Accepted: 01/15/2003] [Indexed: 11/09/2022]  Open
Number Cited by Other Article(s)
1
Xu W, Thieme M, Roulin AC. Natural Diversity of Heat-Induced Transcription of Retrotransposons in Arabidopsis thaliana. Genome Biol Evol 2024;16:evae242. [PMID: 39523776 PMCID: PMC11580521 DOI: 10.1093/gbe/evae242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 09/12/2024] [Accepted: 11/04/2024] [Indexed: 11/16/2024]  Open
2
Cao RB, Chen R, Liao KX, Li H, Xu GB, Jiang XL. Karyotype and LTR-RTs analysis provide insights into oak genomic evolution. BMC Genomics 2024;25:328. [PMID: 38566015 PMCID: PMC10988972 DOI: 10.1186/s12864-024-10177-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Accepted: 03/01/2024] [Indexed: 04/04/2024]  Open
3
Quesneville H. Twenty years of transposable element analysis in the Arabidopsis thaliana genome. Mob DNA 2020;11:28. [PMID: 32742313 PMCID: PMC7385966 DOI: 10.1186/s13100-020-00223-x] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Accepted: 07/16/2020] [Indexed: 11/10/2022]  Open
4
Bousios A, Minga E, Kalitsou N, Pantermali M, Tsaballa A, Darzentas N. MASiVEdb: the Sirevirus Plant Retrotransposon Database. BMC Genomics 2012;13:158. [PMID: 22545773 PMCID: PMC3414828 DOI: 10.1186/1471-2164-13-158] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2011] [Accepted: 04/30/2012] [Indexed: 11/10/2022]  Open
5
Grandbastien MA, Casacuberta JM. Plant Endogenous Retroviruses? A Case of Mysterious ORFs. PLANT TRANSPOSABLE ELEMENTS 2012. [PMCID: PMC7123213 DOI: 10.1007/978-3-642-31842-9_6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
6
Presence ofenv-like sequences inQuercus suber retrotransposons. J Appl Genet 2010;51:461-7. [DOI: 10.1007/bf03208875] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
7
Highly conserved motifs in non-coding regions of Sirevirus retrotransposons: the key for their pattern of distribution within and across plants? BMC Genomics 2010;11:89. [PMID: 20132532 PMCID: PMC2829016 DOI: 10.1186/1471-2164-11-89] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2009] [Accepted: 02/04/2010] [Indexed: 12/15/2022]  Open
8
A shotgun approach to discovering and reconstructing consensus retrotransposons ex novo from dense contigs of short sequences derived from Genbank Genome Survey Sequence database records. Gene 2009;448:168-73. [DOI: 10.1016/j.gene.2009.06.011] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2009] [Revised: 06/12/2009] [Accepted: 06/19/2009] [Indexed: 01/19/2023]
9
Forbes EM, Nieduszynska SR, Brunton FK, Gibson J, Glover LA, Stansfield I. Control of gag-pol gene expression in the Candida albicans retrotransposon Tca2. BMC Mol Biol 2007;8:94. [PMID: 17961216 PMCID: PMC2194720 DOI: 10.1186/1471-2199-8-94] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2007] [Accepted: 10/25/2007] [Indexed: 11/10/2022]  Open
10
Baranov PV, Fayet O, Hendrix RW, Atkins JF. Recoding in bacteriophages and bacterial IS elements. Trends Genet 2006;22:174-81. [PMID: 16460832 DOI: 10.1016/j.tig.2006.01.005] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2005] [Revised: 11/30/2005] [Accepted: 01/13/2006] [Indexed: 11/16/2022]
11
Havecker ER, Gao X, Voytas DF. The Sireviruses, a plant-specific lineage of the Ty1/copia retrotransposons, interact with a family of proteins related to dynein light chain 8. PLANT PHYSIOLOGY 2005;139:857-68. [PMID: 16183843 PMCID: PMC1256001 DOI: 10.1104/pp.105.065680] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2005] [Revised: 07/17/2005] [Accepted: 07/19/2005] [Indexed: 05/04/2023]
12
Neumann P, Pozárková D, Koblízková A, Macas J. PIGY, a new plant envelope-class LTR retrotransposon. Mol Genet Genomics 2005;273:43-53. [PMID: 15668770 DOI: 10.1007/s00438-004-1092-7] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2004] [Accepted: 11/19/2004] [Indexed: 11/29/2022]
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