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Tiwari S, Koti Ainavarapu SR. Platinum Stabilises a Molten-Globule Conformation of a Small Globular Cytosolic Protein SUMO1. Chem Asian J 2025; 20:e202400971. [PMID: 39417787 PMCID: PMC11741158 DOI: 10.1002/asia.202400971] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2024] [Revised: 10/11/2024] [Accepted: 10/16/2024] [Indexed: 10/19/2024]
Abstract
Proteins are generally resistant to large conformational changes under physiological conditions. Here, we show that platinum (Pt(II)), which is widely-used metal centre in cancer therapeutic drugs, binds to a cytosolic protein, small ubiquitin-like modifier 1 (SUMO1), under physiological conditions and changes its conformation to a molten globule (MG). Mass spectrometry (ICP-MS) studies confirmed stoichiometric Pt(II) binding to SUMO1. Fluorescence spectroscopy showed Tyr fluorescence quenching and increased ANS binding. Fluorescence assays on Trp-mutants indicated conformational changes and circular dichroism (CD) suggested MG formation upon Pt(II) binding. In contrast, structural homologues of SUMO1 (ubiquitin (Ubq) and SUMO2) showed no conformational changes on Pt(II) titration. Further studies compared the impact of distinct His residues in SUMO1 on Pt(II) binding and protein structure to SUMO2 and Ubq. Experiments at low pH (5.0) implicated His residues interacting with Pt(II), corroborated by the absence of conformational change in the H75L mutant of SUMO1. Pt(II)-His binding in SUMO1 unravels key molecular determinants of Pt(II)-protein interactions and their conformational consequences. SUMO1 with other SUMOylation components are shown to have enhanced expression in several cancers, hence, our study suggests a possible fate of the non-targetability of Pt(II)-based drugs on SUMOylation in cancer cells, upon interaction with SUMO1.
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Affiliation(s)
- Suman Tiwari
- Department of Chemical SciencesTata Institute of Fundamental ResearchDr Homi Bhabha Road, ColabaMumbai400005India
| | - Sri Rama Koti Ainavarapu
- Department of Chemical SciencesTata Institute of Fundamental ResearchDr Homi Bhabha Road, ColabaMumbai400005India
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2
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Kjærsgaard NL, Nielsen TB, Gothelf KV. Chemical Conjugation to Less Targeted Proteinogenic Amino Acids. Chembiochem 2022; 23:e202200245. [PMID: 35781760 PMCID: PMC9796363 DOI: 10.1002/cbic.202200245] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 07/01/2022] [Indexed: 01/01/2023]
Abstract
Protein bioconjugates are in high demand for applications in biomedicine, diagnostics, chemical biology and bionanotechnology. Proteins are large and sensitive molecules containing multiple different functional groups and in particular nucleophilic groups. In bioconjugation reactions it can therefore be challenging to obtain a homogeneous product in high yield. Numerous strategies for protein conjugation have been developed, of which a vast majority target lysine, cysteine and to a lesser extend tyrosine. Likewise, several methods that involve recombinantly engineered protein tags have been reported. In recent years a number of methods have emerged for chemical bioconjugation to other amino acids and in this review, we present the progress in this area.
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Affiliation(s)
- Nanna L. Kjærsgaard
- Center for Multifunctional Biomolecular Drug Design Interdisciplinary Nanoscience CenterAarhus UniversityGustav Wieds Vej 148000Aarhus CDenmark
- Department of ChemistryAarhus UniversityLangelandsgade 1408000Aarhus CDenmark
| | | | - Kurt V. Gothelf
- Center for Multifunctional Biomolecular Drug Design Interdisciplinary Nanoscience CenterAarhus UniversityGustav Wieds Vej 148000Aarhus CDenmark
- Department of ChemistryAarhus UniversityLangelandsgade 1408000Aarhus CDenmark
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3
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Guin PS, Roy S. Recently Reported Ru-Metal Organic Coordination Complexes and Their Application (A Review). RUSS J GEN CHEM+ 2022. [DOI: 10.1134/s1070363222080242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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4
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Maikoo S, Chakraborty A, Vukea N, Dingle LMK, Samson WJ, de la Mare JA, Edkins AL, Booysen IN. Ruthenium complexes with mono- or bis-heterocyclic chelates: DNA/BSA binding, antioxidant and anticancer studies. J Biomol Struct Dyn 2020; 39:4077-4088. [DOI: 10.1080/07391102.2020.1775126] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Sanam Maikoo
- School of Chemistry and Physics, University of KwaZulu-Natal, Pietermaritzburg, South Africa
| | - Abir Chakraborty
- Biomedical Biotechnology Research Unit, Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, South Africa
| | - Nyeleti Vukea
- Biomedical Biotechnology Research Unit, Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, South Africa
| | | | - William John Samson
- Biomedical Biotechnology Research Unit, Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, South Africa
| | - Jo-Anne de la Mare
- Biomedical Biotechnology Research Unit, Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, South Africa
| | - Adrienne Lesley Edkins
- Biomedical Biotechnology Research Unit, Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, South Africa
| | - Irvin Noel Booysen
- School of Chemistry and Physics, University of KwaZulu-Natal, Pietermaritzburg, South Africa
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5
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Chemistry and reactivity of ruthenium(II) complexes: DNA/protein binding mode and anticancer activity are related to the complex structure. Coord Chem Rev 2019. [DOI: 10.1016/j.ccr.2019.07.008] [Citation(s) in RCA: 110] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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6
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Abstract
Dextranol, a reduced dextran, prevents damage to stored dry protein samples that unmodified dextran would otherwise cause. Desiccation protectants (xeroprotectants) like the polysaccharide dextran are critical for preserving dried protein samples by forming a rigid glass that protects entrapped protein molecules. Stably dried proteins are important for maintaining critical information in clinical samples like blood serum as well as maintaining activity of biologic drug compounds. However, we found that dextran reacts with both dried serum proteins and lyophilized purified proteins during storage, producing high-molecular weight Amadori-product conjugates. These conjugates appeared in a matter of days or weeks when stored at elevated temperatures (37° or 45°C), but also appeared on a timescale of months when stored at room temperature. We synthesized a less reactive dextranol by reducing dextran's anomeric carbon from an aldehyde to an alcohol. Serum samples dried in a dextranol-based matrix protected the serum proteins from forming high-molecular weight conjugates. The levels of four cancer-related serum biomarkers (prostate specific antigen, neuropilin-1, osteopontin, and matrix-metalloproteinase 7) decreased, as measured by immunoassay, when serum samples were stored for one to two weeks in dextran-based matrix. Switching to a dextranol-based xeroprotection matrix slightly reduced the damage to osteopontin and completely stopped any detectable damage during storage in the other three biomarkers when stored for a period of two weeks at 45°C. We also found that switching from dextran to dextranol in a lyophilization formulation eliminates this unwanted reaction, even at elevated temperatures. Dextranol offers a small and easy modification to dextran that significantly improves the molecule's function as a xeroprotectant by eliminating the potential for damaging protein-polysaccharide conjugation.
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7
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Maiti B, Dey N, Bhattacharya S. Engaging Dynamic Surfactant Assemblies in Improving Metal Ion Sensitivity of a 1,4,7-Triazacyclononane-Based Receptor: Differential Optical Response for Cysteine and Histidine. ACS APPLIED BIO MATERIALS 2019; 2:2365-2373. [DOI: 10.1021/acsabm.9b00083] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Bappa Maiti
- Department of Organic Chemistry, Indian Institute of Science, Bangalore 560012, India
- School of Applied & Interdisciplinary Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Nilanjan Dey
- Department of Organic Chemistry, Indian Institute of Science, Bangalore 560012, India
| | - Santanu Bhattacharya
- Department of Organic Chemistry, Indian Institute of Science, Bangalore 560012, India
- School of Applied & Interdisciplinary Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
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8
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9
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Connell TU, Donnelly PS. Labelling proteins and peptides with phosphorescent d6 transition metal complexes. Coord Chem Rev 2018. [DOI: 10.1016/j.ccr.2017.12.001] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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10
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Solomatina AI, Chelushkin PS, Abakumova TO, Zhemkov VA, Kim M, Bezprozvanny I, Gurzhiy VV, Melnikov AS, Anufrikov YA, Koshevoy IO, Su SH, Chou PT, Tunik SP. Reactions of Cyclometalated Platinum(II) [Pt(N∧C)(PR3)Cl] Complexes with Imidazole and Imidazole-Containing Biomolecules: Fine-Tuning of Reactivity and Photophysical Properties via Ligand Design. Inorg Chem 2018; 58:204-217. [DOI: 10.1021/acs.inorgchem.8b02204] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
| | | | - Tatiana O. Abakumova
- Center of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, Nobel str. 3, 143026 Moscow, Russia
| | - Vladimir A. Zhemkov
- Department of Physiology, UT Southwestern Medical Center at Dallas, 5323 Harry Hines Boulevard, Dallas 75390, Texas, United States
| | - Meewhi Kim
- Department of Physiology, UT Southwestern Medical Center at Dallas, 5323 Harry Hines Boulevard, Dallas 75390, Texas, United States
| | - Ilya Bezprozvanny
- Department of Physiology, UT Southwestern Medical Center at Dallas, 5323 Harry Hines Boulevard, Dallas 75390, Texas, United States
| | | | | | | | - Igor O. Koshevoy
- Department of Chemistry, University of Eastern Finland, 80101 Joensuu, Finland
| | - Shih-Hao Su
- Department of Chemistry, National Taiwan University, 10617 Taipei, Taiwan R.O.C
| | - Pi-Tai Chou
- Department of Chemistry, National Taiwan University, 10617 Taipei, Taiwan R.O.C
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11
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Chahal M, Mani K, Lodhi CS, Butcher RJ, Raje S, Angamuthu R. Metal Dependent Formation of Imidazolidine or Hemiaminal Ether Complexes from Multicomponent One-pot Reactions. ChemistrySelect 2018. [DOI: 10.1002/slct.201802755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Manoj Chahal
- Laboratory of Inorganic Synthesis and Bioinspired Catalysis (LISBIC); Department of Chemistry; Indian Institute of Technology Kanpur; Kanpur 208016 India
| | - Kalaikodikumaran Mani
- Laboratory of Inorganic Synthesis and Bioinspired Catalysis (LISBIC); Department of Chemistry; Indian Institute of Technology Kanpur; Kanpur 208016 India
| | - Chetan Singh Lodhi
- Laboratory of Inorganic Synthesis and Bioinspired Catalysis (LISBIC); Department of Chemistry; Indian Institute of Technology Kanpur; Kanpur 208016 India
| | - Ray J. Butcher
- Department of Chemistry; Howard University; Washington, D.C. 20059 United States
| | - Sakthi Raje
- Laboratory of Inorganic Synthesis and Bioinspired Catalysis (LISBIC); Department of Chemistry; Indian Institute of Technology Kanpur; Kanpur 208016 India
| | - Raja Angamuthu
- Laboratory of Inorganic Synthesis and Bioinspired Catalysis (LISBIC); Department of Chemistry; Indian Institute of Technology Kanpur; Kanpur 208016 India
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12
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Fiorini V, Bergamini L, Monti N, Zacchini S, Plush SE, Massi M, Hochkoeppler A, Stefan A, Stagni S. Luminescent protein staining with Re(i) tetrazolato complexes. Dalton Trans 2018; 47:9400-9410. [DOI: 10.1039/c8dt02052c] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Re(i) tricarbonyl diiimine complexes for the first time exploited as luminescent staining agents for SDS-PAGE.
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Affiliation(s)
- Valentina Fiorini
- Department of Industrial Chemistry “Toso Montanari”
- University of Bologna
- I-40136 Bologna
- Italy
| | - Linda Bergamini
- Department of Industrial Chemistry “Toso Montanari”
- University of Bologna
- I-40136 Bologna
- Italy
| | - Nicola Monti
- Department of Industrial Chemistry “Toso Montanari”
- University of Bologna
- I-40136 Bologna
- Italy
| | - Stefano Zacchini
- Department of Industrial Chemistry “Toso Montanari”
- University of Bologna
- I-40136 Bologna
- Italy
| | - Sally E. Plush
- School of Pharmacy and Medical Sciences and the Future Industries Institute University of South Australia
- Adelaide
- Australia
| | - Massimiliano Massi
- Curtin Institute for Functional Molecules and Interfaces
- School of Molecular and Life Science
- Curtin University
- Bentley 6102
- Australia
| | | | - Alessandra Stefan
- CSGI
- Department of Chemistry
- University of Florence
- I-50019 Sesto Fiorentino (FI)
- Italy
| | - Stefano Stagni
- Department of Industrial Chemistry “Toso Montanari”
- University of Bologna
- I-40136 Bologna
- Italy
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13
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Zhou Y, Jia J, Cai L, Huang Y. Protein staining agents from low toxic platinum(ii) complexes with bidentate ligands. Dalton Trans 2018; 47:693-699. [DOI: 10.1039/c7dt02970e] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Low toxic platinum(ii) complexes with bidentate ligands have been developed as novel protein staining agents.
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Affiliation(s)
- Yuyang Zhou
- School of Chemistry
- Biology and Material Engineering
- Suzhou University of Science and Technology
- Suzhou 215009
- China
| | - Junli Jia
- Department of Immunology
- Nanjing Medical University
- Nanjing 211166, Jiangsu
- China
| | - Leilei Cai
- School of Chemistry
- Biology and Material Engineering
- Suzhou University of Science and Technology
- Suzhou 215009
- China
| | - Yinhao Huang
- School of Chemistry
- Biology and Material Engineering
- Suzhou University of Science and Technology
- Suzhou 215009
- China
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14
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Lu Y, Conway-Kenny R, Twamley B, McGoldrick N, Zhao J, Draper SM. 1,10-Phenanthroline Ruthenium(II) Complexes as Model Systems in the Search for High-Performing Triplet Photosensitisers: Addressing Ligand versus Metal Effects. CHEMPHOTOCHEM 2017. [DOI: 10.1002/cptc.201700158] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Yue Lu
- Department of Chemistry; Trinity College Dublin; Dublin 2 Ireland
| | | | - Brendan Twamley
- Department of Chemistry; Trinity College Dublin; Dublin 2 Ireland
| | - Niamh McGoldrick
- Department of Chemistry; Trinity College Dublin; Dublin 2 Ireland
| | - Jianzhang Zhao
- State Key Laboratory of Fine Chemicals; Dalian University of Technology; Dalian 116024 P. R. China
| | - Sylvia M. Draper
- Department of Chemistry; Trinity College Dublin; Dublin 2 Ireland
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15
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16
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Solomatina AI, Chelushkin PS, Krupenya DV, Podkorytov IS, Artamonova TO, Sizov VV, Melnikov AS, Gurzhiy VV, Koshel EI, Shcheslavskiy VI, Tunik SP. Coordination to Imidazole Ring Switches on Phosphorescence of Platinum Cyclometalated Complexes: The Route to Selective Labeling of Peptides and Proteins via Histidine Residues. Bioconjug Chem 2016; 28:426-437. [DOI: 10.1021/acs.bioconjchem.6b00598] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Anastasia I. Solomatina
- Saint Petersburg State University, Institute of
Chemistry, Universitetskii
prospect. 26, 198504 Saint Petersburg, Russia
| | - Pavel S. Chelushkin
- Saint Petersburg State University, Institute of
Chemistry, Universitetskii
prospect. 26, 198504 Saint Petersburg, Russia
- Institute
of Macromolecular Compounds, Russian Academy of Sciences, Bolshoi
prospect, Vasilievskii Island, 31, 199004 Saint Petersburg, Russia
| | - Dmitrii V. Krupenya
- Saint Petersburg State University, Institute of
Chemistry, Universitetskii
prospect. 26, 198504 Saint Petersburg, Russia
| | - Ivan S. Podkorytov
- Saint Petersburg State University, Biomolecular
NMR Laboratory, Botanicheskaya
Str., 17, 198504 Saint Petersburg, Russia
| | - Tatiana O. Artamonova
- Research
Center of Nanobiotechnologies, Peter the Great Saint Petersburg Polytechnic University, Polytechnicheskaya, 29, 195251 Saint Petersburg, Russia
| | - Vladimir V. Sizov
- Saint Petersburg State University, Institute of
Chemistry, Universitetskii
prospect. 26, 198504 Saint Petersburg, Russia
| | - Alexei S. Melnikov
- Saint Petersburg State University, Department
of Physics, Ulianovskaya
Str., 3, 198504 Saint Petersburg, Russia
- Research
Center of Nanobiotechnologies, Peter the Great Saint Petersburg Polytechnic University, Polytechnicheskaya, 29, 195251 Saint Petersburg, Russia
| | - Vladislav V. Gurzhiy
- Saint Petersburg State University, Institute of Earth Sciences and Biology Department, University embankment. 7/9, 199034 Saint Petersburg, Russia
| | - Elena I. Koshel
- Saint Petersburg State University, Institute of Earth Sciences and Biology Department, University embankment. 7/9, 199034 Saint Petersburg, Russia
| | | | - Sergey P. Tunik
- Saint Petersburg State University, Institute of
Chemistry, Universitetskii
prospect. 26, 198504 Saint Petersburg, Russia
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17
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Zhou Y, Jia J, Wang X, Guo W, Wu Z, Xu N. Protein Staining Agents from Cationic and Neutral Luminescent Iridium(III) Complexes. Chemistry 2016; 22:16796-16800. [DOI: 10.1002/chem.201603630] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2016] [Indexed: 12/15/2022]
Affiliation(s)
- Yuyang Zhou
- Jiangsu Key Laboratory of Environmental Functional Materials; School of Chemistry, Biology and Material Engineering; Suzhou University of Science and Technology, Suzhou; 215009 Jiangsu P. R. China
| | - Junli Jia
- Department of Immunology; Nanjing Medical University, Nanjing; 211166 Jiangsu P. R. China
| | - Xiaomei Wang
- Jiangsu Key Laboratory of Environmental Functional Materials; School of Chemistry, Biology and Material Engineering; Suzhou University of Science and Technology, Suzhou; 215009 Jiangsu P. R. China
| | - Weiqiang Guo
- Jiangsu Key Laboratory of Environmental Functional Materials; School of Chemistry, Biology and Material Engineering; Suzhou University of Science and Technology, Suzhou; 215009 Jiangsu P. R. China
| | - Zhengying Wu
- Jiangsu Key Laboratory of Environmental Functional Materials; School of Chemistry, Biology and Material Engineering; Suzhou University of Science and Technology, Suzhou; 215009 Jiangsu P. R. China
| | - Nan Xu
- Jiangsu Key Laboratory of Environmental Functional Materials; School of Chemistry, Biology and Material Engineering; Suzhou University of Science and Technology, Suzhou; 215009 Jiangsu P. R. China
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18
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Yeung CF, Chung LH, Lo HS, Chiu CH, Cai J, Wong CY. Isolation of Ruthenium–Indoline and −Indole Zwitterion Complexes: Insight into the Metal-Induced Cyclization of Aniline-Tethered Alkynes and Strategy to Lower the Activation Barrier of Metal−Vinylidene Formation. Organometallics 2015. [DOI: 10.1021/acs.organomet.5b00211] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Chi-Fung Yeung
- Department
of Biology and
Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong SAR, People’s Republic of China
| | - Lai-Hon Chung
- Department
of Biology and
Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong SAR, People’s Republic of China
| | - Hoi-Shing Lo
- Department
of Biology and
Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong SAR, People’s Republic of China
| | - Chun-Hong Chiu
- Department
of Biology and
Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong SAR, People’s Republic of China
| | - Jialin Cai
- Department
of Biology and
Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong SAR, People’s Republic of China
| | - Chun-Yuen Wong
- Department
of Biology and
Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong SAR, People’s Republic of China
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