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Liu S, An X, Xu C, Guo B, Li X, Chen C, He D, Xu D, Li Y. Exploring the dynamic adaptive responses of Epimedium pubescens to phosphorus deficiency by Integrated transcriptome and miRNA analysis. BMC PLANT BIOLOGY 2024; 24:480. [PMID: 38816792 PMCID: PMC11138043 DOI: 10.1186/s12870-024-05063-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Accepted: 04/25/2024] [Indexed: 06/01/2024]
Abstract
Phosphorus, a crucial macronutrient essential for plant growth and development. Due to widespread phosphorus deficiency in soils, phosphorus deficiency stress has become one of the major abiotic stresses that plants encounter. Despite the evolution of adaptive mechanisms in plants to address phosphorus deficiency, the specific strategies employed by species such as Epimedium pubescens remain elusive. Therefore, this study observed the changes in the growth, physiological reponses, and active components accumulation in E. pubescensunder phosphorus deficiency treatment, and integrated transcriptome and miRNA analysis, so as to offer comprehensive insights into the adaptive mechanisms employed by E. pubescens in response to phosphorus deficiency across various stages of phosphorus treatment. Remarkably, our findings indicate that phosphorus deficiency induces root growth stimulation in E. pubescens, while concurrently inhibiting the growth of leaves, which are of medicinal value. Surprisingly, this stressful condition results in an augmented accumulation of active components in the leaves. During the early stages (30 days), leaves respond by upregulating genes associated with carbon metabolism, flavonoid biosynthesis, and hormone signaling. This adaptive response facilitates energy production, ROS scavenging, and morphological adjustments to cope with short-term phosphorus deficiency and sustain its growth. As time progresses (90 days), the expression of genes related to phosphorus cycling and recycling in leaves is upregulated, and transcriptional and post-transcriptional regulation (miRNA regulation and protein modification) is enhanced. Simultaneously, plant growth is further suppressed, and it gradually begins to discard and decompose leaves to resist the challenges of long-term phosphorus deficiency stress and sustain survival. In conclusion, our study deeply and comprehensively reveals adaptive strategies utilized by E. pubescens in response to phosphorus deficiency, demonstrating its resilience and thriving potential under stressful conditions. Furthermore, it provides valuable information on potential target genes for the cultivation of E. pubescens genotypes tolerant to low phosphorus.
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Affiliation(s)
- Shangnian Liu
- School of Pharmacy, State Key Laboratory of Characteristic Chinese Medicine Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, China
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicines, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials, Institute of Medicinal Plant Development, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, 100193, China
| | - Xiaojing An
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicines, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials, Institute of Medicinal Plant Development, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, 100193, China
- Tianjin University of Traditional Chinese Medicine, Tianjin, 10063, China
| | - Chaoqun Xu
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicines, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials, Institute of Medicinal Plant Development, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, 100193, China
| | - Baolin Guo
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicines, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials, Institute of Medicinal Plant Development, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, 100193, China
| | - Xianen Li
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicines, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials, Institute of Medicinal Plant Development, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, 100193, China
| | - Caixia Chen
- Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicines, Ministry of Education & National Engineering Laboratory for Breeding of Endangered Medicinal Materials, Institute of Medicinal Plant Development, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, 100193, China.
| | - Dongmei He
- School of Pharmacy, State Key Laboratory of Characteristic Chinese Medicine Resources in Southwest China, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, China.
| | - De Xu
- Dazhou Academy of Agricultural Sciences, Dazhou, 635000, China
| | - Yi Li
- Dazhou Academy of Agricultural Sciences, Dazhou, 635000, China
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Mujawamariya M, Wittemann M, Manishimwe A, Ntirugulirwa B, Zibera E, Nsabimana D, Wallin G, Uddling J, Dusenge ME. Complete or overcompensatory thermal acclimation of leaf dark respiration in African tropical trees. THE NEW PHYTOLOGIST 2021; 229:2548-2561. [PMID: 33113226 PMCID: PMC7898918 DOI: 10.1111/nph.17038] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Accepted: 10/16/2020] [Indexed: 05/29/2023]
Abstract
Tropical climates are getting warmer, with pronounced dry periods in large areas. The productivity and climate feedbacks of future tropical forests depend on the ability of trees to acclimate their physiological processes, such as leaf dark respiration (Rd ), to these new conditions. However, knowledge on this is currently limited due to data scarcity. We studied the impact of growth temperature on Rd and its dependency on net photosynthesis (An ), leaf nitrogen (N) and phosphorus (P) contents, and leaf mass per unit area (LMA) in 16 early-successional (ES) and late-successional (LS) tropical tree species in multispecies plantations along an elevation gradient (Rwanda TREE project). Moreover, we explored the effect of drought on Rd in one ES and one LS species. Leaf Rd at 20°C decreased at warmer sites, regardless if it was expressed per unit leaf area, mass, N or P. This acclimation resulted in an 8% and a 28% decrease in Rd at prevailing nighttime temperatures in trees at the intermediate and warmest sites, respectively. Moreover, drought reduced Rd , particularly in the ES species and at the coolest site. Thermal acclimation of Rd is complete or overcompensatory and independent of changes in leaf nutrients or LMA in African tropical trees.
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Affiliation(s)
- Myriam Mujawamariya
- Department of BiologyUniversity of RwandaUniversity AvenuePO Box 117HuyeRwanda
- Department of Biological and Environmental SciencesUniversity of GothenburgPO Box 461GothenburgSE‐405 30Sweden
| | - Maria Wittemann
- Department of BiologyUniversity of RwandaUniversity AvenuePO Box 117HuyeRwanda
- Department of Biological and Environmental SciencesUniversity of GothenburgPO Box 461GothenburgSE‐405 30Sweden
| | - Aloysie Manishimwe
- Department of BiologyUniversity of RwandaUniversity AvenuePO Box 117HuyeRwanda
- Department of Biological and Environmental SciencesUniversity of GothenburgPO Box 461GothenburgSE‐405 30Sweden
| | - Bonaventure Ntirugulirwa
- Department of BiologyUniversity of RwandaUniversity AvenuePO Box 117HuyeRwanda
- Department of Biological and Environmental SciencesUniversity of GothenburgPO Box 461GothenburgSE‐405 30Sweden
- Rwanda Agriculture and Animal Development BoardPO Box 5016KigaliRwanda
| | - Etienne Zibera
- Department of BiologyUniversity of RwandaUniversity AvenuePO Box 117HuyeRwanda
| | - Donat Nsabimana
- School of Forestry and Biodiversity and Biological SciencesUniversity of RwandaBusogoRwanda
| | - Göran Wallin
- Department of Biological and Environmental SciencesUniversity of GothenburgPO Box 461GothenburgSE‐405 30Sweden
| | - Johan Uddling
- Department of Biological and Environmental SciencesUniversity of GothenburgPO Box 461GothenburgSE‐405 30Sweden
| | - Mirindi Eric Dusenge
- Department of BiologyUniversity of RwandaUniversity AvenuePO Box 117HuyeRwanda
- Department of Biological and Environmental SciencesUniversity of GothenburgPO Box 461GothenburgSE‐405 30Sweden
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Peršić V, Đerđ T, Varga M, Hackenberger BK. Real-time CO 2 uptake/emission measurements as a tool for early indication of toxicity in Lemna-tests. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2019; 206:154-163. [PMID: 30476745 DOI: 10.1016/j.aquatox.2018.11.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2018] [Revised: 11/12/2018] [Accepted: 11/13/2018] [Indexed: 06/09/2023]
Abstract
This paper presents an application of continuous monitoring of the emission and uptake rate of CO2 in Lemna toxicity test. On a real-time basis, the CO2 concentration data were collected by the Arduino platform-based respiratory activity measuring system (ResTox) and reported as CO2 concentration dynamic curves. The results of CO2 measurements demonstrated that tested metals (Co, Cu, Hg, and Cd), as well as herbicides (nicosulfuron, diquat, and tembotrione), stimulated the CO2 exchange rates at low doses, while at high doses CO2 exchange rates were inhibited. The addition of higher concentrations of clopyralid stimulated photosynthetic activity and caused a higher increase in respiration rates indicating its mode of action as auxin mimic herbicide. The results obtained underline the necessity of considering other biological endpoints like continuous measurements of gas exchange from the very beginning of exposure to toxicants. Simultaneous measurements of real-time CO2 concentrations, as the primary effect of toxicant mode of action, and processes that are supported by carbon flux, as the secondary effect or endpoint, are needed to relate actual and substrate-induced or inhibited respiration and photosynthesis to those processes. Therefore, continuous measurements of CO2 exchange rates can be implemented for the initial screening of potential toxicity to give valuable information that is needed for further examination of toxicity mechanisms and risk assessment.
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Affiliation(s)
- Vesna Peršić
- The University of Osijek, Department of Biology, Cara Hadrijana 8A, 31 000 Osijek, Croatia.
| | - Tamara Đerđ
- The University of Osijek, Department of Biology, Cara Hadrijana 8A, 31 000 Osijek, Croatia.
| | - Martina Varga
- The University of Osijek, Department of Biology, Cara Hadrijana 8A, 31 000 Osijek, Croatia.
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Lv S, Yang B, Kou Y, Zeng J, Wang R, Xiao Y, Li F, Lu Y, Mu Y, Zhao C. Assessing the difference of tolerance and phytoremediation potential in mercury contaminated soil of a non-food energy crop, Helianthus tuberosus L. (Jerusalem artichoke). PeerJ 2018; 6:e4325. [PMID: 29404218 PMCID: PMC5797682 DOI: 10.7717/peerj.4325] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2017] [Accepted: 01/12/2018] [Indexed: 11/25/2022] Open
Abstract
This study was conducted to evaluate the effects of mercury stress on growth, photosynthesis and mercury accumulation in different cultivars of a non-food energy crop, Jerusalem artichoke, and to screen appropriate cultivars for their efficacy in the phytoremediation of mercury (Hg2+) contaminated soil. Cultivars LZJ033 (high above-ground biomass and nutrient content, and strongly sexual reproduction) and LZJ119 (a long period of vegetative growth) exhibited more tolerance to mercury stress than LZJ047 (the highest tuber yield and total sugar content). The lines LZJ119 and LZJ047 showed delays in emergence time of about four weeks, and LZJ047 exhibited the highest mortality rate, 85.19%, under treatment with 10 mg kg-1 mercury. The MDA (malondialdehyde) content increased whereas and the Pn (net photosynthetic rate), Fv∕Fm (the maximum quantum yield of PSII photochemistry) and chlorophyll content decreased in response to mercury stress. The stem diameter, stem biomass and photosynthetic rate of Jerusalem artichoke showed some modest increases in response to mercury stress and exhibited hormesis at least 1 mg kg-1 mercury treatment. Overall, LZJ119 produced more biomass under mercury stress, whereas LZJ033 exhibited a greater capacity for mercury bioaccumulation. Accordingly, LZJ119 may be a good candidate cultivar for use in cases of moderate—low mercury contamination, whereas LZJ033 may be a better candidate under conditions of high mercury contamination. When Jerusalem artichoke was cultivated in mercury contaminated soil, it not only removed the mercury from soil but also produced large amounts of tubers and shoots which could be used as feedstock for the production of bioethanol.
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Affiliation(s)
- Shiqi Lv
- State Key Laboratory of Grassland Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, China
| | - Bin Yang
- State Key Laboratory of Grassland Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, China
| | - Yixuan Kou
- State Key Laboratory of Grassland Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, China
| | - Jun Zeng
- State Key Laboratory of Grassland Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, China
| | - Ruixiong Wang
- State Key Laboratory of Grassland Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, China
| | - Yumeng Xiao
- State Key Laboratory of Grassland Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, China
| | - Fencan Li
- State Key Laboratory of Grassland Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, China
| | - Ying Lu
- State Key Laboratory of Grassland Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, China
| | - Yuwen Mu
- State Key Laboratory of Grassland Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, China
| | - Changming Zhao
- State Key Laboratory of Grassland Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, Gansu, China
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Fan R, Sun J, Yang F, Li M, Zheng Y, Zhong Q, Cheng D. Divergent scaling of respiration rates to nitrogen and phosphorus across four woody seedlings between different growing seasons. Ecol Evol 2017; 7:8761-8769. [PMID: 29152175 PMCID: PMC5677492 DOI: 10.1002/ece3.3419] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2017] [Revised: 07/27/2017] [Accepted: 08/03/2017] [Indexed: 11/19/2022] Open
Abstract
Empirical studies indicate that the exponents governing the scaling of plant respiration rates (R) with respect to biomass (M) numerically vary between three-fourth for adult plants and 1.0 for seedlings and saplings and are affected by nitrogen (N) and phosphorus (P) content. However, whether the scaling of R with respect to M (or N and P) varies among different phylogenetic groups (e.g., gymnosperms vs. angiosperms) or during the growing and dormant seasons remains unclear. We measured the whole-plant R and M, and N and P content of the seedlings of four woody species during the growing season (early October) and the dormant season (January). The data show that (i) the scaling exponents of R versus M, R versus N, and R versus P differed significantly among the four species, but (ii), not between the growing and dormant seasons for each of the four species, although (iii) the normalization constants governing the scaling relationships were numerically greater for the growing season compared to the dormant season. In addition, (iv) the scaling exponents of R versus M, R versus N, and R versus P were numerically larger for the two angiosperm species compared to those of the two gymnosperm species, (v) the interspecific scaling exponents for the four species were greater during the growing season than in the dormant season, and (vi), interspecifically, P scaled nearly isometric with N content. Those findings indicate that the metabolic scaling relationships among R, M, N, and P manifest seasonal variation and differ between angiosperm and gymnosperm species, that is, there is no single, canonical scaling exponent for the seedlings of woody species.
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Affiliation(s)
- Ruirui Fan
- Fujian Provincial Key Laboratory of Plant EcophysiologyFujian Normal UniversityFuzhouFujianChina
- Key Laboratory of Humid Subtropical Eco‐geographical ProcessMinistry of EducationFuzhouFujianChina
| | - Jun Sun
- Fujian Provincial Key Laboratory of Plant EcophysiologyFujian Normal UniversityFuzhouFujianChina
- Key Laboratory of Humid Subtropical Eco‐geographical ProcessMinistry of EducationFuzhouFujianChina
| | - Fuchun Yang
- Fujian Provincial Key Laboratory of Plant EcophysiologyFujian Normal UniversityFuzhouFujianChina
- Key Laboratory of Humid Subtropical Eco‐geographical ProcessMinistry of EducationFuzhouFujianChina
| | - Man Li
- Fujian Provincial Key Laboratory of Plant EcophysiologyFujian Normal UniversityFuzhouFujianChina
- Key Laboratory of Humid Subtropical Eco‐geographical ProcessMinistry of EducationFuzhouFujianChina
| | - Yuan Zheng
- Fujian Provincial Key Laboratory of Plant EcophysiologyFujian Normal UniversityFuzhouFujianChina
- Key Laboratory of Humid Subtropical Eco‐geographical ProcessMinistry of EducationFuzhouFujianChina
| | - Quanlin Zhong
- Key Laboratory of Humid Subtropical Eco‐geographical ProcessMinistry of EducationFuzhouFujianChina
| | - Dongliang Cheng
- Fujian Provincial Key Laboratory of Plant EcophysiologyFujian Normal UniversityFuzhouFujianChina
- Key Laboratory of Humid Subtropical Eco‐geographical ProcessMinistry of EducationFuzhouFujianChina
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