Prediction of novel stable compounds in the Mg-Si-O system under exoplanet pressures

Ultrahigh-Pressure Magnesium Hydrosilicates as Reservoirs of Water in Early Earth

The origin of water on the Earth is a long-standing mystery, requiring a comprehensive search for hydrous compounds, stable at conditions of the deep Earth and made of Earth-abundant elements. Previous studies usually focused on the current range of pressure-temperature conditions in the Earth's mantle and ignored a possible difference in the past, such as the stage of the core-mantle separation. Here, using ab initio evolutionary structure prediction, we find that only two magnesium hydrosilicate phases are stable at megabar pressures, α-Mg_{2}SiO_{5}H_{2} and β-Mg_{2}SiO_{5}H_{2}, stable at 262-338 GPa and >338  GPa, respectively (all these pressures now lie within the Earth's iron core). Both are superionic conductors with quasi-one-dimensional proton diffusion at relevant conditions. In the first 30 million years of Earth's history, before the Earth's core was formed, these must have existed in the Earth, hosting much of Earth's water. As dense iron alloys segregated to form the Earth's core, Mg_{2}SiO_{5}H_{2} phases decomposed and released water. Thus, now-extinct Mg_{2}SiO_{5}H_{2} phases have likely contributed in a major way to the evolution of our planet.

Molecular electronics behaviour of L-aspartic acid using symmetrical metal electrodes

Protein-based electronics is one of the growing areas of bio-nanoelectronics, where novel electronic devices possessing distinctive properties are being fabricated using specific proteins. Furthermore, if the bio-molecule is analysed amidst different electrodes, intriguing properties are elucidated. This research article investigates the electron transport properties of L-aspartic acid (i.e. L-amino acid) bound to symmetrical electrodes of gold, silver, copper, platinum and palladium employing NEGF-DFT approach using self-consistent function. The theoretical work function of different electrodes is calculated using local density approximation and generalized gradient approximation approach. The calculated work function correlates well with the hole tunneling barrier and conductance of the molecular device, which further authenticate the coupling strength between molecule and electrode. Molecule under consideration also exhibits negative differential resistance region and rectification ratio with all the different electrodes, due to its asymmetrical structure. The molecular device using platinum electrodes exhibits the highest peak to valley ratio of 1.38 and rectification ratio of 3.20, at finite bias. The switching characteristics of different molecular device are justified with detailed transmission spectra and MPSH. These results indicate that L-aspartic acid and similar biomolecule can be vital to the growth of Proteotronics.

RSCMDA: Prediction of Potential miRNA-Disease Associations Based on a Robust Similarity Constraint Learning Method

With the rapid development of biotechnology and computer technology, increasing studies have shown that the occurrence of many diseases in the human body is closely related to the dysfunction of miRNA, and the relationship between them has become a new research hotspot. Exploring disease-related miRNAs information provides a new perspective for understanding the etiology and pathogenesis of diseases. In this study, we proposed a new method based on similarity constrained learning (RSCMDA) to infer disease-associated miRNAs. Considering the problems of noise and incomplete information in current biological datasets, we designed a new framework RSCMDA, which can learn a new disease similarity network and miRNA similarity network based on the existing biological information, and then update the predicted miRNA-disease associations using robust similarity constraint learning method. Consequently, the AUC scores obtained in the global and local cross-validation of RSCMDA are 0.9465 and 0.8494, respectively, which are superior to the other methods. Besides, the prediction performance of RSCMDA is further confirmed by the case study on lung Neoplasms, because 94% of the top 50 miRNAs predicted by the RSCMDA method are confirmed from the existing biological databases or research results. All the results show that RSCMDA is a reliable and effective framework, which can be used as new technology to explore the relationship between miRNA and disease.

Mixed Coordination Silica at Megabar Pressure

Silica (SiO_{2}), as a raw material of silicon, glass, ceramics, abrasive, and refractory substances, etc., is of significant importance in industrial applications and fundamental research such as electronics and planetary science. Here, using a crystal structure searching method and first-principles calculations, we predicted that a ground state crystalline phase of silica with R3[over ¯] symmetry is stable at around 645-890 GPa, which contains six-, eight-, and nine-coordinated silicon atoms and results in an average coordination number of eight. This mixed-coordination silica fills in the density, electronic band gap, and coordination number gaps between the previously known sixfold pyrite-type and ninefold Fe_{2}P-type phases, and may appear in the core or mantle of super-Earth exoplanets, or even the solar giant planets such as the Neptune. In addition, we also found that some silicon superoxides, Cmcm SiO_{3} and Ccce SiO_{6}, are stable in this pressure range and may appear in an oxygen-rich environment. Our finding enriches the high-pressure phase diagram of silicon oxides and improves understanding of the interior structure of giant planets in our solar system.

Identification of synthesisable crystalline phases of water – a prototype for the challenges of computational materials design

We discuss the identification of experimentally realisable crystalline phases of water to outline and contextualise some of the diverse building blocks of a computational materials design process.

Large H2O solubility in dense silica and its implications for the interiors of water-rich planets

Sub-Neptunes are common among the discovered exoplanets. However, lack of knowledge on the state of matter in [Formula: see text]O-rich setting at high pressures and temperatures ([Formula: see text]) places important limitations on our understanding of this planet type. We have conducted experiments for reactions between [Formula: see text] and [Formula: see text]O as archetypal materials for rock and ice, respectively, at high [Formula: see text] We found anomalously expanded volumes of dense silica (up to 4%) recovered from hydrothermal synthesis above ∼24 GPa where the [Formula: see text]-type (Ct) structure appears at lower pressures than in the anhydrous system. Infrared spectroscopy identified strong OH modes from the dense silica samples. Both previous experiments and our density functional theory calculations support up to 0.48 hydrogen atoms per formula unit of ([Formula: see text])[Formula: see text] At pressures above 60 GPa, [Formula: see text]O further changes the structural behavior of silica, stabilizing a niccolite-type structure, which is unquenchable. From unit-cell volume and phase equilibrium considerations, we infer that the niccolite-type phase may contain H with an amount at least comparable with or higher than that of the Ct phase. Our results suggest that the phases containing both hydrogen and lithophile elements could be the dominant materials in the interiors of water-rich planets. Even for fully layered cases, the large mutual solubility could make the boundary between rock and ice layers fuzzy. Therefore, the physical properties of the new phases that we report here would be important for understanding dynamics, geochemical cycle, and dynamo generation in water-rich planets.

Phase transitions beyond post-perovskite in NaMgF3 to 160 GPa

Neighborite, NaMgF_3, is used as a model system for understanding phase transitions in ABX₃ systems (e.g., MgSiO₃) at high pressures. Here we report diamond anvil cell experiments that identify the following phases in NaMgF₃ with compression to 162 GPa: NaMgF₃ (perovskite) → NaMgF₃ (post-perovskite) → NaMgF₃ (Sb₂S₃-type) → NaF (B2-type) + NaMg₂F₅ (P2 ₁ /c) → NaF (B2) + MgF₂ (cotunnite-type). Our results demonstrate the existence of an Sb₂S₃-type post-post-perovskite ABX₃ phase. We also experimentally demonstrate the formation of the P2 ₁ /c AB₂X₅ phase which has been proposed theoretically to be a common high-pressure phase in ABX₃ systems. Our study provides an experimental observation of the full sequence of phase transitions from perovskite to post-perovskite to post-post-perovskite followed by 2-stage breakdown to binary compounds. Notably, a similar sequence of transitions is predicted to occur in MgSiO₃ at ultrahigh pressures, where it has implications for the mineralogy and dynamics in the deep interior of large, rocky extrasolar planets.

Structural, magnetic and electronic properties of CrO2 at multimegabar pressures

As the only half-metallic ferromagnetic material in 3d transition metal dioxides, CrO2 has attracted great scientific interest from materials science to physical chemistry. Here, an investigation into the structural, magnetic and electronic properties of CrO2 under high pressure has been conducted by first-principles calculations based on density functional theory. Static calculations have predicted that CrO2 undergoes structural transitions with the sequence of rutile-type → CaCl2-type → pyrite-type → Pnma → (Fe2P-type→) I4/mmm at high pressures. In addition, a transition from the ferromagnetic state to the non-magnetic state with the magnetic collapse of Cr is observed in CrO2 at the pyrite-Pnma transition. This transition also delocalizes the 3d electrons of Cr and leads to a metallic character of CrO2. The equation of state, elasticity and band gap for each energetically favorable phase of CrO2 are determined. Our results not only bridge the gap about the high-pressure behavior of CrO2 in previous studies but also extend our understanding of its properties up to multimegabar conditions. According to previous data and present results, we further discuss and summarize the high-pressure behavior of various AO2 compounds. This can contribute to investigating properties of other AO2 compounds or exploring novel materials at high pressures.

Crystal structure prediction: reflections on present status and challenges

In these Concluding Remarks, I try to summarize my personal view of the enormous progress made in the field of CSP and the open questions and challenges that keep this field more exciting than ever.

Novel Two-Dimensional Silicon Dioxide with in-Plane Negative Poisson's Ratio

Silicon dioxide or silica, normally existing in various bulk crystalline and amorphous forms, was recently found to possess a two-dimensional structure. In this work, we use ab initio calculation and evolutionary algorithm to unveil three new two-dimensional (2D) silica structures whose thermal, dynamical, and mechanical stabilities are compared with many typical bulk silica. In particular, we find that all three of these 2D silica structures have large in-plane negative Poisson's ratios with the largest one being double of penta graphene and three times of borophenes. The negative Poisson's ratio originates from the interplay of lattice symmetry and Si-O tetrahedron symmetry. Slab silica is also an insulating 2D material with the highest electronic band gap (>7 eV) among reported 2D structures. These exotic 2D silica with in-plane negative Poisson's ratios and widest band gaps are expected to have great potential applications in nanomechanics and nanoelectronics.

Prediction of superconducting ternary hydride MgGeH6: from divergent high-pressure formation routes

Invigorated by the high temperature superconductivity in some binary hydrogen-dominated compounds, we systematically explored high-pressure phase diagrams and superconductivity of a ternary Mg–Ge–H system usingab initiomethods.

Diverse Chemistry of Stable Hydronitrogens, and Implications for Planetary and Materials Sciences

Nitrogen hydrides, e.g., ammonia (NH3), hydrazine (N2H4) and hydrazoic acid (HN3), are compounds of great fundamental and applied importance. Their high-pressure behavior is important because of their abundance in giant planets and because of the hopes of discovering high-energy-density materials. Here, we have performed a systematic investigation on the structural stability of N-H system in a pressure range up to 800 GPa through evolutionary structure prediction. Surprisingly, we found that high pressure stabilizes a series of previously unreported compounds with peculiar structural and electronic properties, such as the N4H, N3H, N2H and NH phases composed of nitrogen backbones, the N9H4 phase containing two-dimensional metallic nitrogen planes and novel N8H, NH2, N3H7, NH4 and NH5 molecular phases. Another surprise is that NH3 becomes thermodynamically unstable above ~460 GPa. We found that high-pressure chemistry of hydronitrogens is much more diverse than hydrocarbon chemistry at normal conditions, leading to expectations that N-H-O and N-H-O-S systems under pressure are likely to possess richer chemistry than the known organic chemistry. This, in turn, opens a possibility of nitrogen-based life at high pressure. The predicted phase diagram of the N-H system also provides a reference for synthesis of high-energy-density materials.