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For: Turjanski P, Parra RG, Espada R, Becher V, Ferreiro DU. Protein Repeats from First Principles. Sci Rep 2016;6:23959. [PMID: 27044676 PMCID: PMC4820709 DOI: 10.1038/srep23959] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2015] [Accepted: 03/16/2016] [Indexed: 01/09/2023]  Open
Number Cited by Other Article(s)
1
Sahu VK, Sur S, Agarwal S, Madhyastha H, Ranjan A, Basu S. Unveiling theranostic potential: Insights into cell-free microRNA-protein interactions. Biophys Chem 2025;322:107421. [PMID: 40048894 DOI: 10.1016/j.bpc.2025.107421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2024] [Revised: 09/02/2024] [Accepted: 03/01/2025] [Indexed: 04/27/2025]
2
Górna MW, Merski M. Discovery and Analysis of Repeat and Low-Complexity Architectures in Proteins and Their Conserved Evolutionary Relationships Using Self-Homology Dot Plots. Methods Mol Biol 2025;2870:95-116. [PMID: 39543033 DOI: 10.1007/978-1-0716-4213-9_7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2024]
3
Felício D, Martins S, Alves GP, Amorim A, Macedo‐Ribeiro S, Merski M. Evolutionary model of repeat insertions in Ataxin-3 traces the origin of the polyglutamine stretch to an ancestral ubiquitin binding module. Protein Sci 2024;33:e5236. [PMID: 39589068 PMCID: PMC11590126 DOI: 10.1002/pro.5236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Revised: 11/08/2024] [Accepted: 11/09/2024] [Indexed: 11/27/2024]
4
Arrías PN, Osmanli Z, Peralta E, Chinestrad PM, Monzon AM, Tosatto SCE. Diversity and structural-functional insights of alpha-solenoid proteins. Protein Sci 2024;33:e5189. [PMID: 39465903 PMCID: PMC11514114 DOI: 10.1002/pro.5189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Revised: 09/25/2024] [Accepted: 09/29/2024] [Indexed: 10/29/2024]
5
Izert MA, Szybowska PE, Górna MW, Merski M. The Effect of Mutations in the TPR and Ankyrin Families of Alpha Solenoid Repeat Proteins. FRONTIERS IN BIOINFORMATICS 2021;1:696368. [PMID: 36303725 PMCID: PMC9581033 DOI: 10.3389/fbinf.2021.696368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Accepted: 06/22/2021] [Indexed: 11/20/2022]  Open
6
Rajathei DM, Parthasarathy S, Selvaraj S. Identification and Analysis of Long Repeats of Proteins at the Domain Level. Front Bioeng Biotechnol 2019;7:250. [PMID: 31649924 PMCID: PMC6795024 DOI: 10.3389/fbioe.2019.00250] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Accepted: 09/16/2019] [Indexed: 12/27/2022]  Open
7
Turjanski P, Ferreiro DU. On the Natural Structure of Amino Acid Patterns in Families of Protein Sequences. J Phys Chem B 2018;122:11295-11301. [PMID: 30239207 DOI: 10.1021/acs.jpcb.8b07206] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
8
Inferring repeat-protein energetics from evolutionary information. PLoS Comput Biol 2017;13:e1005584. [PMID: 28617812 PMCID: PMC5491312 DOI: 10.1371/journal.pcbi.1005584] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2017] [Revised: 06/29/2017] [Accepted: 05/21/2017] [Indexed: 11/19/2022]  Open
9
Paladin L, Hirsh L, Piovesan D, Andrade-Navarro MA, Kajava AV, Tosatto SCE. RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures. Nucleic Acids Res 2016;45:D308-D312. [PMID: 27899671 PMCID: PMC5210593 DOI: 10.1093/nar/gkw1136] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2016] [Revised: 10/20/2016] [Accepted: 10/31/2016] [Indexed: 12/19/2022]  Open
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