Retention Mechanisms of Citric Acid in Ternary Kaolinite-Fe(III)-Citrate Acid Systems Using Fe K-edge EXAFS and L3,2-edge XANES Spectroscopy

Organic Matter Counteracts the Enhancement of Cr(III) Extractability during the Fe(II)-Catalyzed Ferrihydrite Transformation: A Nanoscale- and Molecular-Level Investigation

Phase transformation of ferrihydrite to more stable Fe (oxyhydr)oxides, catalyzed by iron(II) [Fe(II)], significantly influences the mobility of heavy metals [e.g., chromium (Cr)] associated with ferrihydrite. However, the impact of organic matter (OM) on the behavior of Cr(III) in the Fe(II)-catalyzed transformation of ferrihydrite and the underlying mechanisms are unclear. Here, the Fe(II)-catalyzed transformation of the coprecipitates of Fe(III), Cr(III), or rice straw-derived OM was studied at the nanoscale and molecular levels using Fe and Cr K-edge X-ray absorption spectroscopy and spherical aberration corrected scanning transmission electron microscopy (Cs-STEM). Batch extraction results suggested that the OM counteracted the enhancement of Cr(III) extractability during the Fe(II)-catalyzed transformation. Cs-STEM and XAS analysis suggested that Cr(III) could be incorporated into the goethite formed by Fe(II)-catalyzed ferrihydrite transformation, which, however, was inhibited by the OM. Furthermore, Cs-STEM analysis also provided direct nanoscale level evidence that residual ferrihydrite could re-immobilize the released Cr(III) during the Fe(II)-catalyzed transformation process. These results highlighted that the decreased extractability of Cr(III) mainly resulted from the inhibition of OM on the Fe(II)-catalyzed transformation of ferrihydrite to secondary Fe (oxyhydr)oxides, which facilitates insightful understanding and prediction of the geochemical cycling of Cr in soils with active redox dynamics.

Differential transformation mechanisms of exotic Cr(VI) in agricultural soils with contrasting physio-chemical and biological properties

The transformation mechanisms of Cr(VI) in agricultural soils at the molecular level remain largely unknown due to the multitude of abiotic and biotic factors. In this study, the different speciation and distribution of Cr in two types of agricultural soil (Ultisol and Fluvo-aquic soils) after two weeks of aging was investigated using synchrotron-based X-ray absorption near-edge structure (XANES) spectroscopy, microfocused X-ray fluorescence (μ-XRF) and X-ray transmission microscopy (STXM). The microbial community structure of the two soils was also analyzed via high-throughput sequencing of 16S rRNA. Cr(VI) availability was relatively lower in the Ultisol than in the Fluvo-aquic soil after aging. Cr K-edge bulk XANES and STXM analysis indicated that Cr(VI) was reduced to Cr(III) in both soils. μ-XRF analysis and STXM analysis indicated the predominant association of Cr with Mn/Fe oxides and/or organo-Fe oxides in both soils. Additionally, STXM-coupled imaging and multiedge XANES analyses demonstrated that carboxylic groups were involved in the reduction of Cr(VI) and subsequent retention of Cr(III). 16S rRNA analysis showed considerably different bacterial communities across the two soils. Redundancy analysis (RDA) suggested that soil properties, including the total carbon content, Fe oxide component and pH, were closely linked to Cr(VI)-reducing functional bacteria in the Ultisol, including chromium-reducing bacteria (CRB) (e.g., Bacillus sp.) and dissimilatory iron-reducing (DIRB) (e.g., Shewanella sp.) bacteria, which possibly promoted Cr(VI) reduction. These findings shed light on the molecular-level transformation mechanisms of Cr(VI) in agricultural soils, which facilitates the effective management of Cr-enriched farmland.

Molecular Sorption Mechanisms of Cr(III) to Organo-Ferrihydrite Coprecipitates Using Synchrotron-Based EXAFS and STXM Techniques

Ubiquitous organo-ferrihydrite coprecipitates (OFC) significantly affect the mobility and availability of Cr in soil through sorption, but the underlying sorption mechanisms remain unclear at the molecular level. Due to the potential formation of OFC in agricultural soils with returned crop straws, we synthesized OFC with rice/rape straw-derived carbon (C) sources and different loadings. The molecular sorption mechanisms of Cr(III) to the synthesized OFC under different conditions were investigated by Cr K-edge extended X-ray absorption fine structure (EXAFS) spectroscopy and scanning transmission X-ray microscopy (STXM). Cr(III) sorption by OFC decreased with increasing C loading and decreasing pH, regardless of C sources. Moreover, inhibition of Cr(III) sorption to OFC with high C loading occurred when ionic strength (IS) increased, suggesting the presence of outer-sphere complexed Cr(III). EXAFS analysis revealed that more Cr(III) were bound to ferrihydrite of the OFC at a relatively high pH, and organically bound Cr(III) enhanced when increasing C loading and decreasing IS. STXM analysis strongly suggested that C loading reduced Cr(III) sorption through blocking the binding sites on the ferrihydrite, which overwhelmed Cr(III) retention by the direct binding of Cr(III) to carboxyl of the particulate organic matter (OM) and OM coated on the Fh fractions of the OFC. These findings facilitated the comprehensive understanding of the sorption mechanisms of Cr(III) to OFC at the molecular level, which will assist the prediction of Cr(III) mobility in soils, particularly for Cr(III)-contaminated agricultural soils with the application of crop straws.

Molecular Mechanisms of Chromium(III) Immobilization by Organo-Ferrihydrite Co-precipitates: The Significant Roles of Ferrihydrite and Carboxyl

The interaction mechanisms of heavy metals with organo-Fe hydroxides co-precipitates (OFC) remain unclear due to the structural complexity of the OFC. In this study, batch experiments were conducted to investigate the immobilization mechanisms of Cr(III) by the OFC, which was prepared by co-precipitating Fe³⁺ with rice/rape straw-derived dissolved organic carbon, through sorption and co-precipitation using synchrotron-based X-ray absorption near-edge structure (XANES) spectroscopy and scanning transmission X-ray microscopy (STXM). At an Fe/C molar ratio ≥ 0.3, both the sorption and co-precipitation immobilized the majority of Cr(III), but the co-precipitation desorbed less Cr(III) than the sorption regardless of DOC loadings and sources. In contrast, Cr(III) immobilization was significantly reduced at an Fe/C molar ratio of 0.1 for both reactions. Linear combination fitting of Cr K-edge XANES spectra revealed the predominance of ferrihydrite-bound Cr(III), but enhanced organic Cr(III) occurred with increased organic carbon (OC) loading for both the sorption and co-precipitation. STXM coupled with multi-edge XANES analysis confirmed the primary association of Cr(III) with ferrihydrite and directly probed carboxyl as the binding site for Cr(III) retention on the OC constituents of the OFC. These results provided new molecular-level insights into the Cr(III) retention mechanisms on the OFC, particularly for the interactions of Cr(III) and OC constituents of the OFC, which could benefit the management of Cr-contaminated soils with straw returning.

Decomposition of soil organic matter as affected by clay types, pedogenic oxides and plant residue addition rates

The interactive effects of the types and contents of soil clay fractions (SCFs) and plant-residue addition rates on soil organic carbon (SOC) stabilisation are largely unknown. We conducted incubation experiments by amending a sandy soil sample with kaolinitic-illitic, smectitic and allophanic SCFs and adding wheat residues to the mineral mixtures to compare their C stabilisation capacity. The rate of carbon (C) decomposition was higher in the kaolinitic-illitic SCF followed by smectitic and allophanic clay minerals. The supply of easily degradable C substrate from decomposing residues markedly influenced the SCFs' abilities to stabilise SOC. The removal of sesquioxides from the SCFs significantly decreased their C stabilisation capacity, which coincided with a decrease in the dehydrogenase activity of the mineral-residue mixture. The allophanic SCF showed the least microbial activity and the greatest C stabilisation due to having a higher proportion of micropores (75%). The high C stabilisation capacity of allophanic SCF could also be explained by its high specific surface area (119 m²  g^-1). The results of this study are helpful to understand the role of various SCFs in stabilising added C originating from external wheat residue addition but warrant further validation under field conditions.

Role of microorganisms in bioleaching of rare earth elements from primary and secondary resources

In an era of environmental degradation, and water, and mineral scarcity, enhancing microbial function in sustainable mining has become a prerequisite for the future of the green economy. In recent years, the extensive use of rare earth elements (REEs) in green and smart technologies has led to an increase in the focus on recovery and separation of REEs from ore matrices. However, the recovery of REEs using traditional methods is complex and energy intensive, leading to the requirement to develop processes which are more economically feasible and environmentally friendly. The use of phosphate solubilizing microorganisms for bioleaching of REEs provides a biotechnical approach for the recovery of REEs from primary and secondary sources. However, managing and understanding the microbial-mineral interactions in order to develop a successful method for bioleaching of REEs still remains a major challenge. This review focuses on the use of microbes for the bioleaching of REEs and highlights the importance of genomic studies in order to narrow down potential microorganisms for the optimal extraction of REEs.

Uptake, Distribution, and Transformation of Zerovalent Iron Nanoparticles in the Edible Plant Cucumis sativus

Here, we investigated the fate of nanoscale zerovalent iron (nZVI) on the Cucumis sativus under both hydroponic and soil conditions. Seedlings were exposed to 0, 250, and 1000 mg/L (or mg/kg soil) nZVI during 6-9 weeks of a growth period. Ionic controls were prepared using Fe-EDTA. None of the nZVI treatments affected the plant biomass. On the basis of the total iron contents and the superparamagnetic property of nZVI-exposed roots, there was no evidence of pristine nZVI translocation from the roots to shoots. Electron microscopy revealed that the transformed iron nanoparticles are stored in the root cell membrane and the vacuoles of the leaf parenchymal cells. X-ray absorption spectroscopy identified ferric citrate (41%) and iron (oxyhydr)oxides (59%) as the main transformed products in the roots. The shoot samples indicated a larger proportion of ferric citrate (60%) compared to iron (oxyhydr)oxides (40%). The 1.8-fold higher expression of the CsHA1 gene indicated that the plant-promoted transformation of nZVI was driven by protons released from the root layers. The current data provide a basis for two potential nZVI transformation pathways in Cucumis sativus: (1) interaction with low molecular weight organic acid ligands and (2) dissolution-precipitation of the mineral products.

Advances in Scanning Transmission X-Ray Microscopy for Elucidating Soil Biogeochemical Processes at the Submicron Scale

Organic matter, minerals, and microorganisms are spatially associated in complex organo-mineral assemblages within soils. A mechanistic understanding of processes occurring within organo-mineral assemblages requires noninvasive techniques that minimize any disturbance to the physical and chemical integrity of the sample. Synchrotron-based soft (50-2200 eV) X-ray spectromicroscopic techniques, including scanning transmission X-ray microscopy (STXM), transmission X-ray microscopy (TXM), X-ray photoemission electron microscopy (X-PEEM), and scanning photoelectron microscopy (SPEM), coupled with microspectroscopy (e.g., near-edge X-ray absorption fine structure; NEXAFS) allow for determining the spatial association and speciation of most elements found in soils while maintaining sample integrity. This review highlights application of the four spectromicroscopic techniques mentioned above to soil biogeochemical research, with particular emphasis on STXM-NEXAFS, which has contributed to the greatest set of advancements in the understanding of soil organo-mineral interactions, including mineral control on organic carbon cycling and the mechanisms of biomineral formation.

Radiation chemistry of molecular compounds and polymers by soft X-ray spectroscopy and microscopy

Soft X-ray-induced radiation chemistry in selected Fe molecular compounds and some aliphatic polymers was studied using soft X-ray absorption spectroscopy, and scanning transmission X-ray microscopy. X-ray absorption near-edge structure (XANES) spectroscopy was used to elucidate the radiation chemistry. The results show that damage to the Fe molecular complexes involves Fe-ligand bond breaking, ligand damage, and subsequent photoreduction of Fe(III) if it is not tightly bonded to oxygen. Upon radiation damage, polymer PAN primarily undergoes chemical structure changes without mass loss, PECA experiences chemical structure changes as well as small mass loss, while PPC and PEC suffer large mass loss with chemical structure changes. These studies are not only important to X-ray analysis of radiation sensitive materials but also are valuable to the applications of X-ray lithography and other types of nanofabrication involving photoresist.