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For: Rasmussen KK, Frandsen KEH, Boeri Erba E, Pedersen M, Varming AK, Hammer K, Kilstrup M, Thulstrup PW, Blackledge M, Jensen MR, Lo Leggio L. Structural and dynamics studies of a truncated variant of CI repressor from bacteriophage TP901-1. Sci Rep 2016;6:29574. [PMID: 27403839 PMCID: PMC4941734 DOI: 10.1038/srep29574] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2016] [Accepted: 06/17/2016] [Indexed: 11/28/2022]  Open
Number Cited by Other Article(s)
1
Varming AK, Huang Z, Hamad GM, Rasmussen KK, Ingmer H, Kilstrup M, Lo Leggio L. CI:Mor interactions in the lysogeny switches of Lactococcus lactis TP901-1 and Staphylococcus aureus φ13 bacteriophages. MICROBIOME RESEARCH REPORTS 2024;3:15. [PMID: 38841409 PMCID: PMC11149083 DOI: 10.20517/mrr.2023.50] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 12/29/2023] [Accepted: 01/09/2024] [Indexed: 06/07/2024]
2
Erba EB, Pastore A. The Complementarity of Nuclear Magnetic Resonance and Native Mass Spectrometry in Probing Protein-Protein Interactions. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2024;3234:109-123. [PMID: 38507203 DOI: 10.1007/978-3-031-52193-5_8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/22/2024]
3
Pan L, Li D, Lin W, Liu W, Qin W, Xu L, Tong Y. Genomic analysis of a novel active prophage of Hafnia paralvei. Arch Virol 2022;167:2027-2034. [PMID: 35752683 DOI: 10.1007/s00705-022-05498-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2021] [Accepted: 04/20/2022] [Indexed: 11/30/2022]
4
Varming AK, Rasmussen KK, Zong Z, Thulstrup PW, Kilstrup M, Lo Leggio L. Flexible linker modulates the binding affinity of the TP901-1 CI phage repressor to DNA. FEBS J 2021;289:1135-1148. [PMID: 34665941 DOI: 10.1111/febs.16238] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Revised: 09/16/2021] [Accepted: 10/18/2021] [Indexed: 11/30/2022]
5
Nuidate T, Kuaphiriyakul A, Surachat K, Mittraparp-arthorn P. Induction and Genome Analysis of HY01, a Newly Reported Prophage from an Emerging Shrimp Pathogen Vibrio campbellii. Microorganisms 2021;9:400. [PMID: 33671959 PMCID: PMC7919010 DOI: 10.3390/microorganisms9020400] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 02/11/2021] [Accepted: 02/12/2021] [Indexed: 12/18/2022]  Open
6
Complete genome analysis of an active prophage of Vibrio alginolyticus. Arch Virol 2021;166:891-896. [PMID: 33454862 DOI: 10.1007/s00705-020-04941-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Accepted: 11/12/2020] [Indexed: 01/21/2023]
7
Revealing the mechanism of repressor inactivation during switching of a temperate bacteriophage. Proc Natl Acad Sci U S A 2020;117:20576-20585. [PMID: 32788352 DOI: 10.1073/pnas.2005218117] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
8
de Groot A, Siponen MI, Magerand R, Eugénie N, Martin-Arevalillo R, Doloy J, Lemaire D, Brandelet G, Parcy F, Dumas R, Roche P, Servant P, Confalonieri F, Arnoux P, Pignol D, Blanchard L. Crystal structure of the transcriptional repressor DdrO: insight into the metalloprotease/repressor-controlled radiation response in Deinococcus. Nucleic Acids Res 2020;47:11403-11417. [PMID: 31598697 PMCID: PMC6868357 DOI: 10.1093/nar/gkz883] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2019] [Revised: 09/25/2019] [Accepted: 10/01/2019] [Indexed: 12/13/2022]  Open
9
Pedersen M, Neergaard JT, Cassias J, Rasmussen KK, Lo Leggio L, Sneppen K, Hammer K, Kilstrup M. Repression of the lysogenic PR promoter in bacteriophage TP901-1 through binding of a CI-MOR complex to a composite OM-OR operator. Sci Rep 2020;10:8659. [PMID: 32457340 PMCID: PMC7250872 DOI: 10.1038/s41598-020-65493-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Accepted: 05/04/2020] [Indexed: 11/09/2022]  Open
10
Sarkar K, Mukhopadhyay S, Bonnerjee D, Srivastava R, Bagh S. A frame-shifted gene, which rescued its function by non-natural start codons and its application in constructing synthetic gene circuits. J Biol Eng 2019;13:20. [PMID: 30867677 PMCID: PMC6397469 DOI: 10.1186/s13036-019-0151-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2018] [Accepted: 02/20/2019] [Indexed: 12/22/2022]  Open
11
Multiple Mechanisms Are Involved in Repression of Filamentous Phage SW1 Transcription by the DNA-Binding Protein FpsR. J Mol Biol 2019;431:1113-1126. [DOI: 10.1016/j.jmb.2019.01.040] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Revised: 01/16/2019] [Accepted: 01/31/2019] [Indexed: 01/21/2023]
12
Rasmussen KK, Varming AK, Schmidt SN, Frandsen KEH, Thulstrup PW, Jensen MR, Lo Leggio L. Structural basis of the bacteriophage TP901-1 CI repressor dimerization and interaction with DNA. FEBS Lett 2018;592:1738-1750. [PMID: 29683476 DOI: 10.1002/1873-3468.13060] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Revised: 04/12/2018] [Accepted: 04/12/2018] [Indexed: 12/31/2022]
13
Allison JR. Using simulation to interpret experimental data in terms of protein conformational ensembles. Curr Opin Struct Biol 2017;43:79-87. [DOI: 10.1016/j.sbi.2016.11.018] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2016] [Revised: 11/15/2016] [Accepted: 11/21/2016] [Indexed: 01/03/2023]
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