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Zhang X, Zhong H, Wang S, He B, Cao L, Li M, Jiang M, Li Q. Subpixel motion artifacts correction and motion estimation for 3D-OCT. JOURNAL OF BIOPHOTONICS 2024:e202400104. [PMID: 38955360 DOI: 10.1002/jbio.202400104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 04/26/2024] [Accepted: 05/14/2024] [Indexed: 07/04/2024]
Abstract
A number of hardware-based and software-based strategies have been suggested to eliminate motion artifacts for improvement of 3D-optical coherence tomography (OCT) image quality. However, the hardware-based strategies have to employ additional hardware to record motion compensation information. Many software-based strategies have to need additional scanning for motion correction at the expense of longer acquisition time. To address this issue, we propose a motion artifacts correction and motion estimation method for OCT volumetric imaging of anterior segment, without requirements of additional hardware and redundant scanning. The motion correction effect with subpixel accuracy for in vivo 3D-OCT has been demonstrated in experiments. Moreover, the physiological information of imaging object, including respiratory curve and respiratory rate, has been experimentally extracted using the proposed method. The proposed method offers a powerful tool for scientific research and clinical diagnosis in ophthalmology and may be further extended for other biomedical volumetric imaging applications.
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Affiliation(s)
- Xiao Zhang
- School of Medical Technology, Beijing Institute of Technology, Beijing, China
| | - Haozhe Zhong
- School of Medical Technology, Beijing Institute of Technology, Beijing, China
| | - Sainan Wang
- Department of Anesthesiology, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China
| | - Bin He
- State Key Laboratory of Low-dimensional Quantum Physics and Center for Atomic and Molecular Nanoscience, Department of Physics, Tsinghua University and Collaborative Innovation Center of Quantum Matter, Beijing, China
| | - Liangqi Cao
- School of Medical Technology, Beijing Institute of Technology, Beijing, China
| | - Ming Li
- China-America Institute of Neuroscience and Beijing Institute of Geriatrics, Xuanwu Hospital, Capital Medical University, Beijing, China
| | - Miaowen Jiang
- Beijing Institute for Brain Disorders, Capital Medical University, Beijing, China
| | - Qin Li
- School of Medical Technology, Beijing Institute of Technology, Beijing, China
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Wang C, Yin Z, He B, Chen Z, Hu Z, Shi Y, Zhang X, Zhang N, Jing L, Wang G, Xue P. Polarization-isolated stretched-pulse mode-locked swept laser for 10.3-MHz A-line rate optical coherence tomography. OPTICS LETTERS 2023; 48:4025-4028. [PMID: 37527109 DOI: 10.1364/ol.495786] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 07/10/2023] [Indexed: 08/03/2023]
Abstract
Stretched-pulse mode-locked (SPML) lasing based on a chirped fiber Bragg grating (CFBG) has proven to be a powerful method to generate wavelength-swept lasers at speeds of tens of megahertz. However, light transmitted through the CFBG may lead to undesirable laser oscillation that disrupts the mechanism of the laser active mode locking in the theta ring cavity. In this Letter, we demonstrate a simple and low-cost approach to suppress the transmitted light and achieve an effective duty cycle of ∼100% with only one CFBG and no need for intra-cavity semiconductor optical amplifier (SOA) modulation, extra-cavity optical buffering, and post amplification. By utilizing polarization isolation of the bi-directional CFBG, a swept laser centered at 1305 nm, with repetition rate of 10.3 MHz, optical power of 84 mW, and 3 dB bandwidth of 109 nm, is demonstrated. Ultrahigh speed 3D optical coherence tomography (OCT) structural imaging of a human palm in vivo using this swept laser is also demonstrated. We believe that this ultrahigh speed swept laser will greatly promote the OCT technique for industrial and biomedical applications.
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Abstract
We propose a novel technique to measure fiber dispersion without any derivative operation and index measurement. Based on the relationship between the dispersion and the signal in optical computing optical coherence tomography, dispersion can be deduced with high accuracy from optical computing OCT signal position and resolution. The group velocity dispersion and third order dispersion of single mode fiber and dispersion compensating fiber with lengths of 10 m–10 km are measured to be in good consistence with the nominal value.
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Hong J, Zhou X, Xin N, Chen Z, He B, Hu Z, Zhang N, Li Q, Xue P, Zhang X. Theoretical and experimental study of hybrid optical computing engine for arbitrary-order FRFT. OPTICS EXPRESS 2021; 29:40106-40115. [PMID: 34809359 DOI: 10.1364/oe.443223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Accepted: 11/08/2021] [Indexed: 06/13/2023]
Abstract
Fractional Fourier transform (FRFT) is the generalization of Fourier transform. It provides many significant advantages, such as fractional order as the new degree of freedom and high efficiency and great performance for non-stationary signal analysis/processing, that other operations including Fourier transform cannot. Here, we report a hybrid optical system for computation of arbitrary-order FRFT of temporal signals. In experiment, the fractional-domain information of input temporal signals could be directly acquired by detector. In addition, the optical computing results are in good agreement with numerical results. Then we apply the optical computing engine to demodulation of chirp spread spectrum signals. Using sub-Nyquist sampling, the proposed technology could greatly save the number of measurements in demodulation. The compression ratio could be as low as 0.4%, because of the high compression performance of chirp signals in FRFT domain. As a result, the proposed technology has unique advantages in analysis and information extraction for non-stationary signals, especially for chirp-like signals, and may become a powerful optical time-frequency analysis tool for temporal signals.
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Zhang X, Wang C, Zhang W, Ai S, Liao W, Hsieh JC, He B, Chen Z, Hu Z, Zhang N, Xue P. High-speed all-optical processing for spectrum. OPTICS EXPRESS 2021; 29:305-314. [PMID: 33362115 DOI: 10.1364/oe.413628] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Accepted: 12/02/2020] [Indexed: 06/12/2023]
Abstract
Data-processing techniques in spectroscopy are fundamental and powerful analytical tools for lots of practical applications. In the age of big data, high-speed data-processing in spectroscopy is in urgent need, especially for the real-time analysis/feedback of data stream of spectroscopy or the capture of non-repetitive/rare phenomena in fast dynamic process. So far, intensive researches focus on high-speed processing of light signal in time/spatial domain but few people find a way to do it in spectral domain. Here, we report an optical computing technology for high-speed optical spectrum processing with features of real time, multiple functions, all-fiber configuration and immunity to electromagnetic interference. The software-controlled system could perform as, but not limited to, the first-order (or arbitrary fractional-order) differentiator/integrator/Hilbert transformer and tunable band-pass filter, respectively, to handle spectral data rapidly. High-speed processing of optical spectrum at a rate of 10,000,000 times per second is demonstrated.
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Li R, Yin H, Hong J, Wang C, He B, Chen Z, Li Q, Xue P, Zhang X. Speckle reducing OCT using optical chopper. OPTICS EXPRESS 2020; 28:4021-4031. [PMID: 32122062 DOI: 10.1364/oe.382369] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Accepted: 12/23/2019] [Indexed: 06/10/2023]
Abstract
Optical coherence tomography (OCT) has been an important and powerful tool for biological research and clinical applications. However, speckle noise significantly degrades the image quality of OCT and has a negative impact on the clinical diagnosis accuracy. In this paper, we propose a novel speckle noise suppression technique which changes the spatial distribution of sample beam using a special optical chopper. Then a series of OCT images with uncorrelated speckle patterns could be captured and compounded to improve the image quality without degradation of resolution. Typical signal-to-noise ratio improvement of ∼6.4 dB is experimentally achieved in tissue phantom imaging with average number n = 100. Furthermore, compared with conventional OCT, the proposed technique is demonstrated to view finer and clearer biological structures in human skin in vivo, such as sweat glands and blood vessels. The advantages of low cost, simple structure and compact integration will benefit the future design of handheld or endoscopic probe for biomedical imaging in research and clinical applications.
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Yi L, Sun L, Zou M, Hou B. Dual-Channel Spectral Domain Optical Coherence Tomography Based on a Single Spectrometer Using Compressive Sensing. SENSORS (BASEL, SWITZERLAND) 2019; 19:E4006. [PMID: 31527515 PMCID: PMC6767665 DOI: 10.3390/s19184006] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/21/2019] [Revised: 09/09/2019] [Accepted: 09/12/2019] [Indexed: 11/25/2022]
Abstract
Dual-channel spectral domain optical coherence tomography (SD-OCT) is one of the effective methods for improving imaging depth and imaging speed. In this paper, we design a dual-channel SD-OCT system based on a single spectrometer that can operate in two modes: (1) Increasing imaging speed and (2) expanding imaging depth. An optical path offset is preintroduced between the two channels to separate the two-channel data. However, this offset increases the requirement for the spectral resolution of the spectrometer in mode (1), so compressive sensing (CS) technology is used herein to overcome this problem. Consequently, in mode (1), when the spectral resolution of the spectrometer is the same as that used in the single-channel system, we use a dual-channel SD-OCT system combined with CS technology to double the imaging speed. In mode (2), when the spectral resolution of the spectrometer is only half of that used in a single-channel system, the imaging depth can be nearly doubled. We demonstrate the feasibility and effectiveness of the method proposed in this work by imaging a mirror, a fish fin, a fish eye, and an onion.
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Affiliation(s)
- Luying Yi
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing 100084, China.
| | - Liqun Sun
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing 100084, China.
| | - Mingli Zou
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing 100084, China
| | - Bo Hou
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing 100084, China.
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Two-dimensional simulation of optical coherence tomography images. Sci Rep 2019; 9:12189. [PMID: 31434928 PMCID: PMC6704163 DOI: 10.1038/s41598-019-48498-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2019] [Accepted: 08/05/2019] [Indexed: 01/19/2023] Open
Abstract
An algorithm for the simulation of two-dimensional spectral domain optical coherence tomography images based on Maxwell’s equations is presented. A recently developed and modified time-harmonic numerical solution of Maxwell’s equations is used to obtain scattered far fields for many wave numbers contained in the calculated spectrum. The interferometer setup with its lenses is included rigorously with Fresnel integrals and the Debye-Wolf integral. The implemented model is validated with an existing FDTD algorithm by comparing simulated tomograms of single and multiple cylindrical scatterers for perpendicular and parallel polarisation of the incident light. Tomograms are presented for different realisations of multiple cylindrical scatterers. Furthermore, simulated tomograms of a ziggurat-shaped scatterer and of dentin slabs, with varying scatterer concentrations, are investigated. It is shown that the tomograms do not represent the physical structures present within the sample.
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Liao W, Hsieh J, Wang C, Zhang W, Ai S, Peng Z, Chen Z, He B, Zhang X, Zhang N, Tang B, Xue P. Compressed sensing spectral domain optical coherence tomography with a hardware sparse-sampled camera. OPTICS LETTERS 2019; 44:2955-2958. [PMID: 31199354 DOI: 10.1364/ol.44.002955] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Accepted: 05/03/2019] [Indexed: 05/21/2023]
Abstract
We present a sparse-sampled camera for compressed sensing spectral domain optical coherence tomography (CS SD-OCT), which is mainly composed of a novel mask with specially designed coating and a commercially available CCD camera. The sparse-sampled camera under-samples the SD-OCT spectrum in hardware, thus reduces the acquired image data and can achieve faster A-scan speed than conventional CCD camera with the same pixel number. Compared with a conventional SD-OCT system, the CS SD-OCT system equipped with the sparse-sampled camera has better fall-off and SNR performance. CS-OCT imaging of bio-tissue is also demonstrated.
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Zhang W, Zhang X, Wang C, Liao W, Ai S, Hsieh J, Zhang N, Xue P. Optical computing optical coherence tomography with conjugate suppression by dispersion. OPTICS LETTERS 2019; 44:2077-2080. [PMID: 30985815 DOI: 10.1364/ol.44.002077] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2019] [Accepted: 03/15/2019] [Indexed: 06/09/2023]
Abstract
For all imaging techniques, such as optical coherence tomography (OCT), fast imaging speed is always of high demand. Optical computing OCT (OC2T) has achieved ultrahigh speed for real time 3D imaging without post data processing, but its spatial resolution is lowered down due to an imperfect Fourier transformation in the optical computing process. In this Letter, we illustrate the theory of OC2T and prove that the dispersion imbalance between reference arm and sample arm may be introduced to improve the resolution. Furthermore, this novel OC2T technique can also enable a conjugate restrained OCT imaging without any data processing, achieving ∼2 times higher resolution than typical OC2T. At an imaging speed of 5M-A-scans per second, the dispersion imbalance OC2T has strong ability of restraining the conjugate signal with a conjugate signal rejection ratio of 2.6.
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11
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Yang L, Wang S, Kang J, Feng P, Zhang C, Li B, Wong KKY. Sensitivity-enhanced ultrafast optical tomography by parametric- and Raman-amplified temporal imaging. OPTICS LETTERS 2018; 43:5673-5676. [PMID: 30439925 DOI: 10.1364/ol.43.005673] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2018] [Accepted: 10/28/2018] [Indexed: 06/09/2023]
Abstract
To overcome the speed limitation of conventional optical tomography, a temporal imaging technique has been integrated with optical time-domain reflectometry to realize ultrafast temporally magnified (TM) tomography. In this Letter, the sensitivity of TM tomography has been further enhanced using optical parametric amplification and distributed Raman amplification, and this technique is named temporally encoded amplified and magnified (TEAM) tomography. As a result, a 78-dB sensitivity has been realized, comparable to ultrafast optical coherence tomography systems. In addition, an 86.7-μm axial resolution can be realized across a 67.5-mm imaging range. To demonstrate the significance of sensitivity improvement, tomographic imaging of a centimeter-thick phantom is provided at an A-scan rate of 44 MHz.
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12
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Recovering distance information in spectral domain interferometry. Sci Rep 2018; 8:15445. [PMID: 30337645 PMCID: PMC6194011 DOI: 10.1038/s41598-018-33821-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Accepted: 10/01/2018] [Indexed: 11/09/2022] Open
Abstract
This work evaluates the performance of the Complex Master Slave (CMS) method, that processes the spectra at the interferometer output of a spectral domain interferometry device without involving Fourier transforms (FT) after data acquisition. Reliability and performance of CMS are compared side by side with the conventional method based on FT, phase calibration with dispersion compensation (PCDC). We demonstrate that both methods provide similar results in terms of resolution and sensitivity drop-off. The mathematical operations required to produce CMS results are highly parallelizable, allowing real-time, simultaneous delivery of data from several points of different optical path differences in the interferometer, not possible via PCDC.
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Xu J, Song S, Men S, Wang RK. Long ranging swept-source optical coherence tomography-based angiography outperforms its spectral-domain counterpart in imaging human skin microcirculations. JOURNAL OF BIOMEDICAL OPTICS 2017; 22:1-11. [PMID: 29185292 PMCID: PMC5712670 DOI: 10.1117/1.jbo.22.11.116007] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Accepted: 11/08/2017] [Indexed: 05/07/2023]
Abstract
There is an increasing demand for imaging tools in clinical dermatology that can perform in vivo wide-field morphological and functional examination from surface to deep tissue regions at various skin sites of the human body. The conventional spectral-domain optical coherence tomography-based angiography (SD-OCTA) system is difficult to meet these requirements due to its fundamental limitations of the sensitivity roll-off, imaging range as well as imaging speed. To mitigate these issues, we demonstrate a swept-source OCTA (SS-OCTA) system by employing a swept source based on a vertical cavity surface-emitting laser. A series of comparisons between SS-OCTA and SD-OCTA are conducted. Benefiting from the high system sensitivity, long imaging range, and superior roll-off performance, the SS-OCTA system is demonstrated with better performance in imaging human skin than the SD-OCTA system. We show that the SS-OCTA permits remarkable deep visualization of both structure and vasculature (up to ∼2 mm penetration) with wide field of view capability (up to 18×18 mm2), enabling a more comprehensive assessment of the morphological features as well as functional blood vessel networks from the superficial epidermal to deep dermal layers. It is expected that the advantages of the SS-OCTA system will provide a ground for clinical translation, benefiting the existing dermatological practice.
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Affiliation(s)
- Jingjiang Xu
- University of Washington, Department of Bioengineering, Seattle, Washington, United States
| | - Shaozhen Song
- University of Washington, Department of Bioengineering, Seattle, Washington, United States
| | - Shaojie Men
- University of Washington, Department of Bioengineering, Seattle, Washington, United States
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