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Sarwa A, Białońska A, Garbicz M, Szyszko B. Plenates: Anion-Dependent Self-Assembly of the Pyrrole Cage Encapsulating Silver(I) Clusters. Chemistry 2023; 29:e202203850. [PMID: 36594926 DOI: 10.1002/chem.202203850] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Revised: 01/02/2023] [Accepted: 01/03/2023] [Indexed: 01/04/2023]
Abstract
The self-assembly of 2,5-diformylpyrrole, tris(2-aminoethyl)amine, and silver(I) yielded, depending on the size and basicity of the anion, new cascade complexes or plenates, that is, cryptates incorporating Agn n+ clusters. The nature of the product was counterion-dependent, and its formation was either driven by cascade anion binding or by argentophilic interactions stabilizing the cluster within the cavity. The reaction of plenates with tetrabutylammonium halides resulted in the protonation-coupled replacement of the Ag3 3+ with anion(s), yielding cascade cryptates.
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Affiliation(s)
- Aleksandra Sarwa
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-383, Wrocław, Poland
| | - Agata Białońska
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-383, Wrocław, Poland
| | - Mateusz Garbicz
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-383, Wrocław, Poland
| | - Bartosz Szyszko
- Department of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-383, Wrocław, Poland
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Mirabella CFM, Aragay G, Ballester P. Influence of the solvent in the self-assembly and binding properties of [1 + 1] tetra-imine bis-calix[4]pyrrole cages. Chem Sci 2022; 14:186-195. [PMID: 36605742 PMCID: PMC9769375 DOI: 10.1039/d2sc05311j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Accepted: 11/22/2022] [Indexed: 11/25/2022] Open
Abstract
We report the self-assembly of shape-persistent [1 + 1] tetra-imine cages 1 based on two different tetra-α aryl-extended calix[4]pyrrole scaffolds in chlorinated solvents and in a 9 : 1 CDCl3 : CD3CN solvent mixture. We show that the use of a bis-N-oxide 4 (4,4'-dipyridyl-N,N'-dioxide) as template is not mandatory to induce the emergence of the cages but has a positive effect on the reaction yield. We use 1H NMR spectroscopy to investigate and characterize the binding properties (kinetic and thermodynamic) of the self-assembled tetra-imine cages 1 with pyridine N-oxide derivatives. The cages form kinetically and thermodynamically stable inclusion complexes with the N-oxides. For the bis-N-oxide 4, we observe the exclusive formation of 1 : 1 complexes independently of the solvent used. In contrast, the pyridine-N-oxide 5 (mono-topic guest) produces inclusion complexes displaying solvent dependent stoichiometry. The bis-N-oxide 4 is too short to bridge the gap between the two endohedral polar binding sites of 1 by establishing eight ideal hydrogen bonding interactions. Nevertheless, the bimolecular 4⊂1 complex results as energetically favored compared to the 52⊂1 ternary counterpart. The inclusion of the N-oxides, 4 and 5, in the tetra-imine cages 1 is significantly faster in chlorinated solvents (minutes) than in the 9 : 1 CDCl3 : CD3CN solvent mixture (hours). We provide an explanation for the similar energy barriers calculated for the formation of the 4⊂1 complex using the two different ternary counterparts 52⊂1 and (CD3CN)2⊂1 as precursors. We propose a mechanism for the in-out guest exchange processes experienced by the tetra-imine cages 1.
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Affiliation(s)
- Chiara F. M. Mirabella
- Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology (BIST)Avgda. Països Catalans, 1643007 TarragonaSpain,Universitat Rovira i Virgili, Departament de Química Analítica i Química Orgànicac/Marcel·lí Domingo,143007 TarragonaSpain
| | - Gemma Aragay
- Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology (BIST)Avgda. Països Catalans, 1643007 TarragonaSpain
| | - Pablo Ballester
- Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology (BIST)Avgda. Països Catalans, 1643007 TarragonaSpain,ICREAPasseig Lluís Companys, 2308010 BarcelonaSpain
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Guchhait T, Pradhan P, Panda L, Sreejit K. Rao M. Pyrrole‐Based Cryptand‐Like Cages: A Critical Overview of Synthetic Strategies and Applications. ChemistrySelect 2022. [DOI: 10.1002/slct.202202671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Tapas Guchhait
- Department of Chemistry C. V. Raman Global University, Bhubaneswar Odisha 752054 India
| | - Pujarani Pradhan
- Department of Chemistry C. V. Raman Global University, Bhubaneswar Odisha 752054 India
| | - Lipsita Panda
- Department of Chemistry C. V. Raman Global University, Bhubaneswar Odisha 752054 India
| | - M. Sreejit K. Rao
- Department of Chemistry C. V. Raman Global University, Bhubaneswar Odisha 752054 India
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Guchhait T, Roy S, Jena P. Mannich Reaction: An Alternative Synthetic Approach for Various Pyrrole‐Based Anion Receptors and Chelating Ligands. European J Org Chem 2022. [DOI: 10.1002/ejoc.202200578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Tapas Guchhait
- C V Raman Global University Chemistry Mahura, Janla 752054 Bhubaneswar INDIA
| | - Satabdi Roy
- St Mary's College Department of Sciences INDIA
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Rath H, Jana M, Narayanasamy R, Usharani D, Tripathi K. Fluoride ion Coordination-Induced Turn-On Fluorescence of Tailored N-Methyl N-Confused Tripyrromonomethene Analogues. Org Biomol Chem 2022; 20:6741-6749. [DOI: 10.1039/d2ob01180h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Inorder to achieve striking compromise between flexibility and rigidity, two unprecedented highly air-stable N-methyl N-Confused tripyrromonomethene analogues in near quantitative yields have been synthesized by chloranil oxidation under aerobic condition....
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Ziach K, Dąbrowa K, Niedbała P, Kalisiak J, Jurczak J. Exploration of structural motifs influencing solid-state conformation and packing of unclosed cryptands sharing the same 19-membered macrocyclic core. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.10.053] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Self assembled macrobicycle and tricycle cages containing pyrrole rings by dynamic covalent chemistry method. J INCL PHENOM MACRO 2015. [DOI: 10.1007/s10847-015-0517-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Kumar S, Munjal M, Singh J, Gupta R. Nickel and Copper Complexes of Pyrrolecarboxamide Ligands – Stabilization of M
3+
Species and Isolation of Ni
3+
Complexes. Eur J Inorg Chem 2014. [DOI: 10.1002/ejic.201402361] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Sushil Kumar
- Department of Chemistry, University of Delhi, Delhi 110007, India, http://people.du.ac.in/~rgupta/
| | - Megha Munjal
- Department of Chemistry, University of Delhi, Delhi 110007, India, http://people.du.ac.in/~rgupta/
| | - Jyoti Singh
- Department of Chemistry, University of Delhi, Delhi 110007, India, http://people.du.ac.in/~rgupta/
| | - Rajeev Gupta
- Department of Chemistry, University of Delhi, Delhi 110007, India, http://people.du.ac.in/~rgupta/
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Chen HQ, Zhang K, Jin C, Huang W. Zinc halide template effects on the construction of [1 + 1] flexible Schiff-base macrocyclic complexes having pendant-armed dialdehyde components. Dalton Trans 2014; 43:8486-92. [DOI: 10.1039/c4dt00605d] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A pair of pendant-armed dialdehydes is used to react with 1,3-propanediamine to prepare six [1 + 1] flexible Schiff-base macrocyclic complexes in the presence of ZnX2 salts (X = Cl, Br, I), where the template Zn(ii) cations and the auxiliary halide anions are believed to play important roles in forming the resulting macrocyclic Zn(ii) complexes.
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Affiliation(s)
- Hui-Qing Chen
- State Key Laboratory of Coordination Chemistry, Nanjing National Laboratory of Microstructures, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, P. R. China.
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Jana D, Mani G, Schulzke C. Synthesis of Novel Polyazacryptands for Recognition of Tetrahedral Oxoanions and Their X-ray Structures. Inorg Chem 2013; 52:6427-39. [DOI: 10.1021/ic400319b] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Debasish Jana
- Department of Chemistry, Indian Institute of Technology-Kharagpur, Kharagpur,
West Bengal 721 302, India
| | - Ganesan Mani
- Department of Chemistry, Indian Institute of Technology-Kharagpur, Kharagpur,
West Bengal 721 302, India
| | - Carola Schulzke
- Ernst-Moritz-Arndt-Universität Greifswald, Institut für Biochemie, Felix-Hausdorff-Strasse 4, Greifswald
17487, Germany
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12
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Kumar R, Guchhait T, Mani G. Synthesis and X-ray Structures of Novel Macrocycles and Macrobicycles Containing N,N-Di(pyrrolylmethyl)-N-methylamine Moiety: Preliminary Anion Binding Study. Inorg Chem 2012; 51:9029-38. [DOI: 10.1021/ic3011822] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Rajnish Kumar
- Department
of Chemistry, Indian Institute of Technology, Kharagpur 721 302, India
| | - Tapas Guchhait
- Department
of Chemistry, Indian Institute of Technology, Kharagpur 721 302, India
| | - Ganesan Mani
- Department
of Chemistry, Indian Institute of Technology, Kharagpur 721 302, India
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13
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Hart JS, Nichol GS, Love JB. Directed secondary interactions in transition metal complexes of tripodal pyrrole imine and amide ligands. Dalton Trans 2012; 41:5785-8. [DOI: 10.1039/c2dt30539a] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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14
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Guchhait T, Mani G. Dipyrrolylmethane-based Macrobicyclic Azacryptand: Synthesis, X-ray Structures, Conformational and Anion Binding Properties. J Org Chem 2011; 76:10114-21. [DOI: 10.1021/jo201969f] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tapas Guchhait
- Department of Chemistry, Indian Institute of Technology, Kharagpur, India 721 302
| | - Ganesan Mani
- Department of Chemistry, Indian Institute of Technology, Kharagpur, India 721 302
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Abstract
The design of supramolecular hosts for anions began with simple diaza bicycles, named katapinands, and has evolved over the last 40 years to a number of elegantly designed receptors capable of binding many different anions. About the same time the term cryptand appeared in reference to another bicyclic compound that was selective for alkaline-earth ions. Since the first report these simple bicycles, a vast arena of hosts has appeared, including acyclic, monocyclic, and other multicyclic supramolecular receptors. Studies of these systems have revealed considerable information about anion coordination chemistry, including the fact that many of these complexes mimic their transition-metal corollaries in terms of coordination numbers. However, for anions interactions occur via H-bonding most often, rather than the coordinate covalent or dative bonds observed in transition-metal coordination. This critical review examines the design of enclosed, primarily bicyclic cryptands as hosts for anions, with a small scattering of higher polyhedra when deemed appropriate to the discussion. In order to show the development (evolution) of the field, key examples of early work will be noted and compared with more recent developments (136 references).
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Affiliation(s)
- Sung Ok Kang
- Department of Chemistry and Biochemistry, The University of Texas at Austin, 1 University Station A5300, Austin, TX 78712, USA
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Abstract
This critical review describes selected examples extracted from the extensive literature generated during the past 42 years on the topic of anion binding in molecular capsules. The goal of including anions in molecular capsules emerges from the idea of incorporating the traits exhibited by biological receptors into synthetic ones. At the outset of this research area the capsules were unimolecular. The scaffold of the receptor was designed to covalently link a series of functional groups that could converge into a cavity and to avoid its collapse. The initial examples involved the encapsulation of one monoatomic spherical anion. With time, the cavity size of the receptor was increased and encapsulation of polyatomic anions and co-encapsulation became a reality. Synthetic economy fueled the use of aggregates of self-complementary molecules rather than one large molecule as capsules. The main purpose of this review is to give a general overview of the topic which might be of interest to supramolecular or non supramolecular chemists alike (149 references).
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Affiliation(s)
- Pablo Ballester
- ICREA and Institute of Chemical Research of Catalonia, Av. Països Catalans 16, 43007 Tarragona, Spain.
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19
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Hong SJ, Yoo J, Yoon DW, Yoon J, Kim JS, Lee CH. Superior Anion-Binding Properties of a Cryptand-like Oligopyrrolic Macrocycle. Chem Asian J 2010; 5:768-72. [DOI: 10.1002/asia.200900518] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Knight JC, Prabaharan R, Ward BD, Amoroso AJ, Edwards PG, Kariuki BM. A facile one-pot synthesis of a new cryptand via a Pd(ii)-catalysed carbonylation reaction. Dalton Trans 2010; 39:10031-3. [DOI: 10.1039/c0dt01205j] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Calix[n]pyrroles as Anion and Ion-Pair Complexants. TOPICS IN HETEROCYCLIC CHEMISTRY 2010. [DOI: 10.1007/7081_2010_30] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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23
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Setsune JI, Watanabe K. Cryptand-like porphyrinoid assembled with three dipyrrylpyridine chains: synthesis, structure, and homotropic positive allosteric binding of carboxylic acids. J Am Chem Soc 2008; 130:2404-5. [PMID: 18247614 DOI: 10.1021/ja710424n] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jun-ichiro Setsune
- Department of Chemistry, Graduate School of Science, Kobe University, 1-1 Rokkodai-cho, Nada-ku, Kobe 657-8501, Japan.
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Lee CH, Miyaji H, Yoon DW, Sessler JL. Strapped and other topographically nonplanar calixpyrrole analogues. Improved anion receptors. Chem Commun (Camb) 2008:24-34. [DOI: 10.1039/b713183f] [Citation(s) in RCA: 208] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Denekamp C, Suwinska K, Salman H, Abraham Y, Eichen Y, Ben Ari J. Anion-Binding Properties of the Tripyrrolemethane Group: A Combined Experimental and Theoretical Study. Chemistry 2007; 13:657-65. [PMID: 17001610 DOI: 10.1002/chem.200600546] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Tripyrrolemethane- and bistripyrrolemethane-containing systems were recently reported to be efficient and selective hosts for anions. Nevertheless, the basic intrinsic properties of tripyrrolemethane as a ligand for anions have not yet been explored. Here we report the study of the anion-binding properties of the tripyrrolemethane group. We applied a combined experimental and theoretical approach to determine the affinity of the tripyrrolemethane system for different anions in the gas phase, in solution and in the crystalline state. In the crystal, the tripyrrolemethane group forms a number of different complexes with the bromide ion, some involving the participation of more than one ligand species. Despite the very similar basicity of fluoride and dihydrogen phosphate, the tripyrrolemethane ligand exhibits a clear preference for the fluoride anion in solution, which indicates an anion-binding system and not merely deprotonation. Although the affinity of the tripyrrolemethane ligand for other ions was negligible in solution, gas-phase studies show that complexation with larger halide ions is favoured over complexation with fluoride.
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Affiliation(s)
- Chagit Denekamp
- Department of Chemistry, Technion-Israel Institute of Technology, Technion City, 32000, Haifa, Israel.
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Wang H, Chen M, Wang L. Selective Synthesis and Utility of One Tripyrrolic Compound and Its Intermediates. Chem Pharm Bull (Tokyo) 2007; 55:1439-41. [DOI: 10.1248/cpb.55.1439] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- Haiyong Wang
- Department of Medicinal Chemistry, Beijing Institute of Radiation Medicine
| | - Min Chen
- Beijing Neuron Applied Technology R&D Co
| | - Lin Wang
- Department of Medicinal Chemistry, Beijing Institute of Radiation Medicine
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Borisova NE, Reshetova MD, Ustynyuk YA. Metal-Free Methods in the Synthesis of Macrocyclic Schiff Bases. Chem Rev 2006; 107:46-79. [PMID: 17212470 DOI: 10.1021/cr0683616] [Citation(s) in RCA: 327] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Nataliya E Borisova
- Department of Chemistry, M. V. Lomonosov Moscow State University, Leninskie Gory, 1/3, 119992 Moscow, Russia
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Vigato PA, Tamburini S. The challenge of cyclic and acyclic schiff bases and related derivatives. Coord Chem Rev 2004. [DOI: 10.1016/j.cct.2003.09.003] [Citation(s) in RCA: 798] [Impact Index Per Article: 39.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Synthesis and characterization of dinuclear lanthanide(III) and yttrium(III) cryptates of a hexavalent anionic polydentate ligand. INORG CHEM COMMUN 2002. [DOI: 10.1016/s1387-7003(02)00632-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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