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Chen X, Xia C, Guo P, Wang C, Zuo X, Jiang YB, Jiang T. Preserving Structurally Labile Peptide Nanosheets After Molecular Functionalization of the Self-Assembling Peptides. Angew Chem Int Ed Engl 2024; 63:e202315296. [PMID: 38009674 DOI: 10.1002/anie.202315296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 11/14/2023] [Accepted: 11/24/2023] [Indexed: 11/29/2023]
Abstract
A significant challenge in creating supramolecular materials is that conjugating molecular functionalities to building blocks often results in dissociation or undesired morphological transformation of their assemblies. Here we present a facile strategy to preserve structurally labile peptide assemblies after molecular modification of the self-assembling peptides. Sheet-forming peptides are designed to afford a staggered alignment with the segments bearing chemical modification sites protruding from the sheet surfaces. The staggered assembly allows for simultaneous separation of attached molecules from each other and from the underlying assembly motifs. Strikingly, using PEGs as the external molecules, PEG400 - and PEG700 -peptide conjugates directly self-associate into nanosheets with the PEG chains localized on the sheet surfaces. In contrast, the sheet formation based on in-register lateral packing of peptides does not recur upon the peptide PEGylation. This strategy allows for fabrication of densely modified assemblies with a variety of molecules, as demonstrated using biotin (hydrophobic molecule), c(RGDfK) (cyclic pentapeptide), and nucleic acid aptamer (negatively charged ssDNA). The staggered co-assembly also enables extended tunability of the amount/density of surface molecules, as exemplified by screening ligand-appended assemblies for cell targeting. This study paves the way for functionalization of historically challenging fragile assemblies while maintaining their overall morphology.
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Affiliation(s)
- Xin Chen
- Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, The MOE Key Laboratory of Spectrochemical Analysis and Instrumentation, Xiamen, 361005, China
| | - Cai Xia
- Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, The MOE Key Laboratory of Spectrochemical Analysis and Instrumentation, Xiamen, 361005, China
| | - Pan Guo
- Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, The MOE Key Laboratory of Spectrochemical Analysis and Instrumentation, Xiamen, 361005, China
| | - Chenru Wang
- Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, The MOE Key Laboratory of Spectrochemical Analysis and Instrumentation, Xiamen, 361005, China
| | - Xiaobing Zuo
- X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA
| | - Yun-Bao Jiang
- Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, The MOE Key Laboratory of Spectrochemical Analysis and Instrumentation, Xiamen, 361005, China
| | - Tao Jiang
- Department of Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, The MOE Key Laboratory of Spectrochemical Analysis and Instrumentation, Xiamen, 361005, China
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Jorgensen MD, Chmielewski J. Recent advances in coiled-coil peptide materials and their biomedical applications. Chem Commun (Camb) 2022; 58:11625-11636. [PMID: 36172799 DOI: 10.1039/d2cc04434j] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Extensive research has gone into deciphering the sequence requirements for peptides to fold into coiled-coils of varying oligomeric states. More recently, additional signals have been introduced within coiled-coils to promote higher order assembly into biomaterials with a rich distribution of morphologies. Herein we describe these strategies for association of coiled-coil building blocks and biomedical applications. With many of the systems described herein having proven use in protein storage, cargo binding and delivery, three dimensional cell culturing and vaccine development, the future potential of coiled-coil materials to have significant biomedical impact is highly promising.
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Affiliation(s)
- Michael D Jorgensen
- Purdue University, Department of Chemistry, 560 Oval Drive, West Lafayette, Indiana, USA.
| | - Jean Chmielewski
- Purdue University, Department of Chemistry, 560 Oval Drive, West Lafayette, Indiana, USA.
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3
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Curtis RW, Chmielewski J. A comparison of the collagen triple helix and
coiled‐coil
peptide building blocks on metal
ion‐mediated
supramolecular assembly. Pept Sci (Hoboken) 2020. [DOI: 10.1002/pep2.24190] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Ryan W. Curtis
- Department of Chemistry Purdue University West Lafayette Indiana USA
| | - Jean Chmielewski
- Department of Chemistry Purdue University West Lafayette Indiana USA
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4
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Nambiar M, Nepal M, Chmielewski J. Self-Assembling Coiled-Coil Peptide Nanotubes with Biomolecular Cargo Encapsulation. ACS Biomater Sci Eng 2019; 5:5082-5087. [PMID: 33455255 DOI: 10.1021/acsbiomaterials.9b01304] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Monessha Nambiar
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States
| | - Manish Nepal
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States
| | - Jean Chmielewski
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States
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5
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Zou R, Wang Q, Wu J, Wu J, Schmuck C, Tian H. Peptide self-assembly triggered by metal ions. Chem Soc Rev 2015; 44:5200-19. [DOI: 10.1039/c5cs00234f] [Citation(s) in RCA: 183] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
This review summarizes the recent development of structures, functions, as well as strategies of a peptide self-assembly induced by metal ions.
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Affiliation(s)
- Rongfeng Zou
- Key Lab for Advanced Materials and Institute of Fine Chemicals
- East China University of Science and Technology
- Shanghai 200237
- China
| | - Qi Wang
- College of Public Health
- Nantong University
- Nantong 226019
- China
| | - Junchen Wu
- Key Lab for Advanced Materials and Institute of Fine Chemicals
- East China University of Science and Technology
- Shanghai 200237
- China
| | - Jingxian Wu
- Key Lab for Advanced Materials and Institute of Fine Chemicals
- East China University of Science and Technology
- Shanghai 200237
- China
| | - Carsten Schmuck
- Institute for Organic Chemistry
- University of Duisburg-Essen
- Essen 45117
- Germany
| | - He Tian
- Key Lab for Advanced Materials and Institute of Fine Chemicals
- East China University of Science and Technology
- Shanghai 200237
- China
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Manimaran B, Vanitha A, Karthikeyan M, Ramakrishna B, Mobin SM. Self-Assembly of Selenium-Bridged Rhenium(I)-Based Metalla Rectangles: Synthesis, Characterization, and Molecular Recognition Studies. Organometallics 2014. [DOI: 10.1021/om400673f] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- Bala. Manimaran
- Department of Chemistry, Pondicherry University, Puducherry 605014, India
| | - A. Vanitha
- Department of Chemistry, Pondicherry University, Puducherry 605014, India
| | - M. Karthikeyan
- Department of Chemistry, Pondicherry University, Puducherry 605014, India
| | | | - Shaikh M. Mobin
- National Single Crystal X-ray
Diffraction Facility, Indian Institute of Technology-Bombay, Powai, Mumbai 400076, India
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7
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Panda JJ, Chauhan VS. Short peptide based self-assembled nanostructures: implications in drug delivery and tissue engineering. Polym Chem 2014. [DOI: 10.1039/c4py00173g] [Citation(s) in RCA: 138] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Self-assembling peptides with many potential biomedical applications.
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Affiliation(s)
- Jiban Jyoti Panda
- International Centre for Genetic Engineering and Biotechnology
- New Delhi 110067, India
- Institute of Nano Science and Technology
- Mohali, India
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9
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Beck W. Metal Complexes of Biologically Important Ligands, CLXXVI.[1] Formation of Peptides within the Coordination Sphere of Metal Ions and of Classical and Organometallic Complexes and Some Aspects of Prebiotic Chemistry. Z Anorg Allg Chem 2011. [DOI: 10.1002/zaac.201100137] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Zaytsev DV, Xie F, Mukherjee M, Bludin A, Demeler B, Breece RM, Tierney DL, Ogawa MY. Nanometer to millimeter scale peptide-porphyrin materials. Biomacromolecules 2010; 11:2602-9. [PMID: 20804210 PMCID: PMC2952671 DOI: 10.1021/bm100540t] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
AQ-Pal14 is a 30-residue polypeptide that was designed to form an α-helical coiled coil that contains a metal-binding 4-pyridylalanine residue on its solvent-exposed surface. However, characterization of this peptide shows that it exists as a three-stranded coiled coil, not a two-stranded one as predicted from its design. Reaction with cobalt(III) protoporphyrin IX (Co-PPIX) produces a six-coordinate Co-PPIX(AQ-Pal14)(2) species that creates two coiled-coil oligomerization domains coordinated to opposite faces of the porphyrin ring. It is found that this species undergoes a buffer-dependent self-assembly process: nanometer-scale globular materials were formed when these components were reacted in unbuffered H(2)O, while millimeter-scale, rod-like materials were prepared when the reaction was performed in phosphate buffer (20 mM, pH 7). It is suggested that assembly of the globular material is dictated by the conformational properties of the coiled-coil forming AQ-Pal14 peptide, whereas that of the rod-like material involves interactions between Co-PPIX and phosphate ion.
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Affiliation(s)
- Daniil V. Zaytsev
- Department of Chemistry and Center for Photochemical Sciences, Bowling Green State University, Bowling Green, OH 43403
| | - Fei Xie
- Department of Chemistry and Center for Photochemical Sciences, Bowling Green State University, Bowling Green, OH 43403
| | - Madmuhita Mukherjee
- Department of Chemistry and Center for Photochemical Sciences, Bowling Green State University, Bowling Green, OH 43403
| | - Alexey Bludin
- Department of Chemistry and Center for Photochemical Sciences, Bowling Green State University, Bowling Green, OH 43403
| | - Borries Demeler
- Center for Analytical Ultracentrifugation of Macromolecular Assemblies, University of Texas Health Science Center, San Antonio, TX 78229
| | - Robert M. Breece
- Department of Chemistry and Biochemistry, Miami University, Oxford, OH 45056
| | - David L. Tierney
- Department of Chemistry and Biochemistry, Miami University, Oxford, OH 45056
| | - Michael Y. Ogawa
- Department of Chemistry and Center for Photochemical Sciences, Bowling Green State University, Bowling Green, OH 43403
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12
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13
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Tsurkan MV, Ogawa MY. Formation of Peptide Nanospheres and Nanofibrils by Metal Coordination. Biomacromolecules 2007; 8:3908-13. [DOI: 10.1021/bm700879t] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mikhail V. Tsurkan
- Department of Chemistry and Center for Photochemical Sciences, Bowling Green State University, Bowling Green, Ohio 43403
| | - Michael Y. Ogawa
- Department of Chemistry and Center for Photochemical Sciences, Bowling Green State University, Bowling Green, Ohio 43403
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14
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Tsurkan MV, Ogawa MY. Metal-Mediated Peptide Assembly: Use of Metal Coordination to Change the Oligomerization State of an α-Helical Coiled-Coil. Inorg Chem 2007; 46:6849-51. [PMID: 17661463 DOI: 10.1021/ic700958h] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Metal coordination is used to alter the oligomerization state of a designed peptide structure. The 30-residue polypeptide AQ-Pal14Pal21contains two metal-binding 4-pyridylalanine (Pal) residues on its solvent-exposed surface and exists as a very stable two-stranded alpha-helical coiled-coil. Upon the addition of Pt(en)(NO3)2, a significant conformational change to a metal-bridged, four-helix bundle is seen.
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Affiliation(s)
- Mikhail V Tsurkan
- Department of Chemistry and Center for Photochemical Sciences, Bowling Green State University, Bowling Green, OH 43403, USA
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15
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Duderstadt RE, Tsuie BM, Macha SF, Limbach PA. Investigation of single-site zirconium azaborolinyl complexes by laser desorption ionization time of flight mass spectrometry. Anal Chim Acta 2007; 596:124-31. [PMID: 17616249 DOI: 10.1016/j.aca.2007.05.066] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2007] [Revised: 05/24/2007] [Accepted: 05/31/2007] [Indexed: 11/23/2022]
Abstract
Laser desorption ionization mass spectrometry (LDI-MS) was performed on selected azaborolinyl zirconium complexes in order to study them as potential industrial polyolefin catalyst compounds. UV-vis absorption data in conjunction with negative and positive ionization analyses revealed the mechanistic workings of the compounds when such single-site catalysts function in olefin polymerization reactions. Results presented highlight the many benefits of LDI-MS in the study of single-site zirconium azaborolinyl catalyst complexes including minimal sample preparation, the absence of matrix/pH/solvation effects, a lower degree of fragmentation as compared to EI ionization, high sensitivity and the ability to observe interesting and unique gas phase chemistry including ring slippage, and distinctive metal coordination and oxidation states. The extreme lability of the chlorine ligands was apparent, as well as the reactivity of the resulting zirconium metal center as demonstrated by the appearance of numerous similar four-coordinate zirconium species along with di-chloro-bridged dimers. LDI-MS permits analysis at low molecular weights, improving spectral characterization of these zirconium complexes.
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Affiliation(s)
- Randall E Duderstadt
- Equistar Chemicals, A Lyondell Company, 11530 Northlake Dr., Cincinnati, Ohio 45249, United States.
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16
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Hong J, Kharenko OA, Fan J, Xie F, Petros AK, Gibney BR, Ogawa MY. Evidence That a Miniature CuI Metalloprotein Undergoes Collisional Electron Transfer in the Inverted Marcus Region. Angew Chem Int Ed Engl 2006. [DOI: 10.1002/ange.200601517] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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17
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Hong J, Kharenko OA, Fan J, Xie F, Petros AK, Gibney BR, Ogawa MY. Evidence That a Miniature CuI Metalloprotein Undergoes Collisional Electron Transfer in the Inverted Marcus Region. Angew Chem Int Ed Engl 2006; 45:6137-40. [PMID: 16927358 DOI: 10.1002/anie.200601517] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Jing Hong
- Department of Chemistry and Center for Photochemical Sciences, Bowling Green State University, Bowling Green, OH 43403, USA
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18
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Gerhardt WW, Weck M. Investigations of Metal-Coordinated Peptides as Supramolecular Synthons. J Org Chem 2006; 71:6333-41. [PMID: 16901113 DOI: 10.1021/jo060395q] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This article describes the synthesis and controlled assembly of four model biological-hybrid scaffolds via coordination of a metal complex to four new tripeptides. Each model tripeptide investigated has either a central pyridyl glycyl or a pyridyl alanyl residue between two terminally protected glycines. All tripeptides were coordinated to their complementary recognition unit, a p-methoxy SCS-Pd pincer complex. The assembly events were fully characterized and investigated by 1H NMR, ES-MS, and isothermal titration calorimetry (ITC) to elucidate how the substitution and spatial distance of the pyridyl moiety to the peptide backbone affects the metal coordination. Using these characterization techniques, we have shown that the metal-coordination events in all cases are fast and quantitative and that the peptide backbones do not interfere with the self-assembly. The ITC analyses showed that the 4-pyridyl tripeptides are the tightest binding ligands toward the palladated pincer complexes with the alanyl derivative being the strongest overall, demonstrating the superiority of the 4-pyridyl peptides over their 3-pyridyl analogues. The measured association constants are comparable to other pincer-pyridine systems in DMSO suggesting that the controlled coordination of the metalated pincer/pyridine interaction is an interesting biological synthon and will allow for the future development of important noncovalent peptide-based hybrid materials.
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Affiliation(s)
- Warren W Gerhardt
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
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Casanova M, Zangrando E, Munini F, Iengo E, Alessio E. fac-[Re(CO)3(dmso-O)3](CF3SO3): a new versatile and efficient Re(i) precursor for the preparation of mono and polynuclear compounds containing fac-[Re(CO)3]+ fragments. Dalton Trans 2006:5033-45. [PMID: 17060989 DOI: 10.1039/b609853c] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We show here that the new complex fac-[Re(CO)3(dmso-O)3](CF3SO3) (1), efficiently prepared in one step from [ReBr(CO)5] and featuring a broad range of solubility, is, in general, a better precursor for the one-step synthesis of mono- and polynuclear inorganic compounds containing fac-[Re(CO)3]+ fragments compared to the commonly used (NEt4)2fac-[ReBr3(CO)3] and fac-[Re(CO)3(CH3CN)3](Y) (Y = PF6, BF4, ClO4) species. Compound 1 is the first example of a Re(I)-dmso complex structurally characterized and confirms the rule that dmso is always O-bonded when trans to CO. The reactivity of 1 was tested in the one-step preparation of several new and known complexes. The O-bonded sulfoxides of 1 are replaced under mild conditions by tri- (L3) and bidentate ligands (L2) to produce fac-[Re(CO)3(L3)]+ and fac-[Re(CO)3(L2)(dmso-O)]+ compounds, respectively. An excess of monodentate ligands (L) and more forcing conditions are needed to prepare fac-[Re(CO)3(L)3]+ compounds. The new compounds include fac-[Re(CO)3(bipy)(dmso-O)](CF3SO3) (4), that turned out to be an excellent precursor for binding the luminescent fac-[Re(CO)3(bipy)]+ fragment to polytopic ligands for the construction of more elaborate assemblies. One example reported here is the two-step preparation of fac-[{Re(CO)3(bipy)}(mu-4,4'-bipy){Ru(TPP)(CO)}](CF3SO3) (8) (TPP = tetraphenylporphyrin). The X-ray structures of the new compounds 1, 4, of the bis-porphyrin complex fac-[Re(CO)3Cl(4'MPyP)2] (13) (4'MPyP = 5-(4'pyridyl)-10,15,20-triphenylporphyrin), and of the rhenium-cyclophane [{(CO)3Re(mu-OH)2Re(CO)3}2(micro-4,4'-bipy)2] (15), among others, are described. Compound 1 might find useful applications in supramolecular chemistry (metal-mediated assembly of large architectures), in the in situ preparation of stable Re compounds to be used in nuclear medicine, and for the labeling of biomolecules.
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Affiliation(s)
- Massimo Casanova
- Dipartimento di Scienze Chimiche, Università di Trieste, Via L. Giorgieri 1, 34127 Trieste, Italy
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