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Thiruvengadathan R, Korampally V, Ghosh A, Chanda N, Gangopadhyay K, Gangopadhyay S. Nanomaterial processing using self-assembly-bottom-up chemical and biological approaches. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2013; 76:066501. [PMID: 23722189 DOI: 10.1088/0034-4885/76/6/066501] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Nanotechnology is touted as the next logical sequence in technological evolution. This has led to a substantial surge in research activities pertaining to the development and fundamental understanding of processes and assembly at the nanoscale. Both top-down and bottom-up fabrication approaches may be used to realize a range of well-defined nanostructured materials with desirable physical and chemical attributes. Among these, the bottom-up self-assembly process offers the most realistic solution toward the fabrication of next-generation functional materials and devices. Here, we present a comprehensive review on the physical basis behind self-assembly and the processes reported in recent years to direct the assembly of nanoscale functional blocks into hierarchically ordered structures. This paper emphasizes assembly in the synthetic domain as well in the biological domain, underscoring the importance of biomimetic approaches toward novel materials. In particular, two important classes of directed self-assembly, namely, (i) self-assembly among nanoparticle-polymer systems and (ii) external field-guided assembly are highlighted. The spontaneous self-assembling behavior observed in nature that leads to complex, multifunctional, hierarchical structures within biological systems is also discussed in this review. Recent research undertaken to synthesize hierarchically assembled functional materials have underscored the need as well as the benefits harvested in synergistically combining top-down fabrication methods with bottom-up self-assembly.
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Kobko N, Marianski M, Asensio A, Wieczorek R, Dannenberg JJ. A Density Functional Theory Evaluation of Hydrophobic Solvation: Ne, Ar and Kr in a 50-Water Cluster. Implications for the Hydrophobic Effect. COMPUT THEOR CHEM 2011; 990:214-221. [PMID: 22666658 DOI: 10.1016/j.comptc.2011.11.022] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
Abstract
The physical explanation for the hydrophobic effect has been the subject of disagreement. Physical organic chemists tend to use a explanation related to pressure, while many biochemists prefer an explanation that involves decreased entropy of the aqueous solvent. We present DFT calculations at the B3LYP/6-31G(d,p) and X3LYP/6-31G(d,p) levels on the solvation of three noble gases (Ne, Ar, and Kr) in clusters of 50 waters. Vibrational analyses show no substantial decreases in the vibrational entropies of the waters in any of the three clusters. The observed positive free energies of transfer from the gas phase or from nonpolar solvents to water appear to be due to the work needed to make a suitable hole in the aqueous solvent. We distinguish between hydrophobic solvations (explicitly studied here) and the hydrophobic effect that occurs when a solute (or transition state) can decrease its volume through conformational change (which is not possible for the noble gases).
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Affiliation(s)
- Nadya Kobko
- Department of Chemistry, City University of New York - Hunter College and the Graduate School, 695 Park Avenue, New York NY 10065
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Yamaguchi T, Koda S. Mode-coupling theoretical analysis of transport and relaxation properties of liquid dimethylimidazolium chloride. J Chem Phys 2010; 132:114502. [PMID: 20331300 DOI: 10.1063/1.3354117] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
The mode-coupling theory for molecular liquids based on the interaction-site model is applied to a representative molecular ionic liquid, dimethylimidazolium chloride, and dynamic properties such as shear viscosity, self-diffusion coefficients, reorientational relaxation time, electric conductivity, and dielectric relaxation spectrum are analyzed. Molecular dynamics (MD) simulation is also performed on the same system for comparison. The theory captures the characteristics of the dynamics of the ionic liquid qualitatively, although theoretical relaxation times are several times larger than those from the MD simulation. Large relaxations are found in the 100 MHz region in the dispersion of the shear viscosity and the dielectric relaxation, in harmony with various experiments. The relaxations of the self-diffusion coefficients are also found in the same frequency region. The dielectric relaxation spectrum is divided into the contributions of the translational and reorientational modes, and it is demonstrated that the relaxation in the 100 MHz region mainly stems from the translational modes. The zero-frequency electric conductivity is close to the value predicted by the Nernst-Einstein equation in both MD simulation and theoretical calculation. However, the frequency dependence of the electric conductivity is different from those of self-diffusion coefficients in that the former is smaller than the latter in the gigahertz-terahertz region, which is compensated by the smaller dispersion of the former in the 100 MHz region. The analysis of the theoretical calculation shows that the difference in their frequency dependence is due to the different contribution of the short- and long-range liquid structures.
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Affiliation(s)
- T Yamaguchi
- Department of Molecular Design and Engineering, Graduate School of Engineering, Nagoya University, Furo-cho B2-3(611), Chikusa, Nagoya, Aichi 464-8603, Japan.
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Mizuno K, Masuda Y, Yamamura T, Kitamura J, Ogata H, Bako I, Tamai Y, Yagasaki T. Roles of the Ether Oxygen in Hydration of Tetrahydrofuran Studied by IR, NMR, and DFT Calculation Methods. J Phys Chem B 2009; 113:906-15. [DOI: 10.1021/jp807497d] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Kazuko Mizuno
- Department of Applied Chemistry and Biotechnology, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, Chemical Research Center, Hungarian Academy of Sciences, H-1025 Budapest, P.O. Box 17, Hungary, Department of Applied Physics, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, and Department of Computational Molecular Science, Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan
| | - Yohko Masuda
- Department of Applied Chemistry and Biotechnology, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, Chemical Research Center, Hungarian Academy of Sciences, H-1025 Budapest, P.O. Box 17, Hungary, Department of Applied Physics, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, and Department of Computational Molecular Science, Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan
| | - Takuya Yamamura
- Department of Applied Chemistry and Biotechnology, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, Chemical Research Center, Hungarian Academy of Sciences, H-1025 Budapest, P.O. Box 17, Hungary, Department of Applied Physics, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, and Department of Computational Molecular Science, Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan
| | - Junya Kitamura
- Department of Applied Chemistry and Biotechnology, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, Chemical Research Center, Hungarian Academy of Sciences, H-1025 Budapest, P.O. Box 17, Hungary, Department of Applied Physics, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, and Department of Computational Molecular Science, Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan
| | - Hiroshi Ogata
- Department of Applied Chemistry and Biotechnology, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, Chemical Research Center, Hungarian Academy of Sciences, H-1025 Budapest, P.O. Box 17, Hungary, Department of Applied Physics, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, and Department of Computational Molecular Science, Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan
| | - Imre Bako
- Department of Applied Chemistry and Biotechnology, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, Chemical Research Center, Hungarian Academy of Sciences, H-1025 Budapest, P.O. Box 17, Hungary, Department of Applied Physics, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, and Department of Computational Molecular Science, Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan
| | - Yoshinori Tamai
- Department of Applied Chemistry and Biotechnology, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, Chemical Research Center, Hungarian Academy of Sciences, H-1025 Budapest, P.O. Box 17, Hungary, Department of Applied Physics, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, and Department of Computational Molecular Science, Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan
| | - Takuma Yagasaki
- Department of Applied Chemistry and Biotechnology, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, Chemical Research Center, Hungarian Academy of Sciences, H-1025 Budapest, P.O. Box 17, Hungary, Department of Applied Physics, Graduate School of Engineering, University of Fukui, Fukui 910-8507, Japan, and Department of Computational Molecular Science, Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan
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Yamaguchi T, Furuhashi H, Matsuoka T, Koda S. Dynamic Solvophobic Effect and Its Cooperativity in the Hydrogen-bonding Liquids Studied by Dielectric and Nuclear Magnetic Resonance Relaxation. J Phys Chem B 2008; 112:16633-41. [DOI: 10.1021/jp807473c] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tsuyoshi Yamaguchi
- Department of Molecular Design and Engineering, Graduate School of Engineering, Nagoya University, Furo-cho B2-3(611), Chikusa, Nagoya, Aichi 464-8603, Japan
| | - Hiroki Furuhashi
- Department of Molecular Design and Engineering, Graduate School of Engineering, Nagoya University, Furo-cho B2-3(611), Chikusa, Nagoya, Aichi 464-8603, Japan
| | - Tatsuro Matsuoka
- Department of Molecular Design and Engineering, Graduate School of Engineering, Nagoya University, Furo-cho B2-3(611), Chikusa, Nagoya, Aichi 464-8603, Japan
| | - Shinobu Koda
- Department of Molecular Design and Engineering, Graduate School of Engineering, Nagoya University, Furo-cho B2-3(611), Chikusa, Nagoya, Aichi 464-8603, Japan
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