1
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Ćeranić KA, Zarić SD, Malenov DP. Cation recognition by benzene sandwich compounds - a DFT perspective. Dalton Trans 2025. [PMID: 40241677 DOI: 10.1039/d5dt00395d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/18/2025]
Abstract
Cation-π interactions between alkali, alkaline earth and ammonium cations and sandwich compounds of benzene and the cyclopentadienyl (Cp) anion were studied using quantum chemical CCSD(T)/CBS and DFT (B3LYP/def2-TZVP) calculations. The results show significantly stronger interactions of sandwich compounds with respect to (uncoordinated) benzene. Moreover, very strong cation-π interactions of Cp sandwich compounds are furthermore surpassed by cation-π interactions of benzene sandwich compounds, which are capable of reaching a remarkable interaction energy value of -196.8 kcal mol-1 (Mg2+/W(benzene)2). While there are only small variations of interaction energy values for sandwich compounds of different transition metals (3d metals < 4d < 5d), cation-π interactions progressively become stronger in the following order: (uncoordinated) benzene < Cp sandwich < benzene sandwich. Aside from interaction energies, the cation-π interactions can be assessed by means of their influence on the geometries of sandwich compounds, which are found to strongly correlate with the strength of cation-π interactions. These results emphasize sandwich compounds, particularly those containing C6 aromatic rings, as promising candidates for new receptors for common metal cations.
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Affiliation(s)
- Katarina A Ćeranić
- Innovative Centre of the Faculty of Chemistry, Studentski trg 12-16, Belgrade, Serbia
| | - Snežana D Zarić
- University of Belgrade - Faculty of Chemistry, Studentski trg 12-16, Belgrade, Serbia.
| | - Dušan P Malenov
- University of Belgrade - Faculty of Chemistry, Studentski trg 12-16, Belgrade, Serbia.
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2
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Krupka KM, Krzemińska A, de Lara-Castells MP. A practical post-Hartree-Fock approach describing open-shell metal cluster-support interactions. Application to Cu 3 adsorption on benzene/coronene. RSC Adv 2024; 14:31348-31359. [PMID: 39359335 PMCID: PMC11446239 DOI: 10.1039/d4ra05401f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Accepted: 09/18/2024] [Indexed: 10/04/2024] Open
Abstract
Current advances in synthesizing and characterizing atomically precise monodisperse metal clusters (AMCs) at the subnanometer scale have opened up fascinating possibilities in designing new heterogeneous (photo)catalysts as well as functional interfaces between AMCs and biologically relevant molecules. Understanding the nature of AMC-support interactions at molecular-level is essential for optimizing (photo)catalysts performance and designing novel ones with improved properties. Møller-Plesset second-order perturbation theory (MP2) is one of the most cost-efficient single-reference post-Hartree-Fock wave-function-based theories that can be applied to AMC-support interactions considering adequate molecular models of the support, and thus complementing state-of-the-art dispersion-corrected density functional theory. However, the resulting AMC-support interaction is typically overestimated with the MP2 method and must be corrected. The coupled MP2 (MP2C) scheme replacing the uncoupled Hartree-Fock dispersion energy by a coupled dispersion contribution, has been proven to describe accurately van-der-Waals (vdW)-dominated interactions between closed-shell AMCs and carbon-based supports. In this work, the accuracy of a MP2C-based scheme is evaluated in modelling open-shell AMC-cluster interactions that imply charge transfer or other strong attractive energy contributions beyond vdW forces. For this purpose, we consider the interaction of Cu3 with molecular models of graphene of increasing size (benzene and coronene). In this way, it is shown that subchemical precision (within 0.1 kcal mol-1) is achieved with the modified MP2C scheme, using the explicitly correlated coupled cluster theory with single, double, and perturbative triple excitations [CCSD(T)-F12] as a benchmark method. It is also revealed that the energy difference between uncoupled and coupled dispersion terms closely follows benchmark values of the repulsive intramonomer correlation contribution. The proposed open-shell MP2C-based approach is expected to be of general applicability to open-shell atomic or molecular species interacting with coronene for regions of the potential landscape where single-reference electronic structure descriptions suffice.
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Affiliation(s)
- Katarzyna M Krupka
- Institute of Fundamental Physics (AbinitSim Unit ABINITFOT Group), Consejo Superior de Investigaciones Científicas (CSIC) Madrid Spain
| | - Agnieszka Krzemińska
- Institute of Physics, Lodz University of Technology ul. Wolczanska 219 90-924 Lodz Poland
| | - María Pilar de Lara-Castells
- Institute of Fundamental Physics (AbinitSim Unit ABINITFOT Group), Consejo Superior de Investigaciones Científicas (CSIC) Madrid Spain
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3
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Neklyudov V, Freger V. Ion Coupling, Bonding, and Transfer in Narrow Carbon Nanotubes. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2402327. [PMID: 38881257 DOI: 10.1002/smll.202402327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Revised: 05/20/2024] [Indexed: 06/18/2024]
Abstract
Narrow carbon nanotubes (nCNT) are unique mimics of biological channels with water-ion selectivity attractive for applications such as water purification and osmotic energy harvesting, yet their understanding is still incomplete. Here, an ab initio computation is employed to develop the full picture of ion transfer in nCNT including specificity and coupling between ions. The thermodynamic costs of ion transfer are computed for single ions and ion pairs and used to evaluate different local coupling scenarios including strong (pairing) and weak (free-ion) coupling as well as "electroneutrality breakdown" (EB), possible for cations only due to their chemisorption-like interaction with nCNT. The results also indicate that nCNT behaves as a highly polarizable metal-like shell, which eliminates the dielectric energy when CNT accommodates coupled cation and anion. This allows facile computation and comparison of the full transfer costs, including translation entropy, for different ions in different coupling modes to identify the dominant regime. EB transfer appears most favorable for K+, while anions strongly favor transfer as pairs, except for chloride which favors weak coupling and, at neutral pH, transfers as a trace ion coupled to both cation and OH-. The results demonstrate that, in general, observed ion permeation and conduction in nCNT, especially for anions, reflect a complex ion-specific and composition-dependent interplay between different ions.
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Affiliation(s)
- Vadim Neklyudov
- Wolfson Department of Chemical Engineering, Technion - IIT, Haifa, 32000, Israel
| | - Viatcheslav Freger
- Wolfson Department of Chemical Engineering, Technion - IIT, Haifa, 32000, Israel
- Russel Berrie Nanotechnology Institute, Technion - IIT, Haifa, 32000, Israel
- Grand Technion Energy Program, Technion - IIT, Haifa, 32000, Israel
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4
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Di W, Xue K, Cai J, Zhu Z, Li Z, Fu H, Lei H, Hu W, Tang C, Wang W, Cao Y. Single-Molecule Force Spectroscopy Reveals Cation-π Interactions in Aqueous Media Are Highly Affected by Cation Dehydration. PHYSICAL REVIEW LETTERS 2023; 130:118101. [PMID: 37001074 DOI: 10.1103/physrevlett.130.118101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Accepted: 01/24/2023] [Indexed: 06/19/2023]
Abstract
Cation-π interactions underlie many important processes in biology and materials science. However, experimental investigations of cation-π interactions in aqueous media remain challenging. Here, we studied the cation-π binding strength and mechanism by pulling two hydrophobic polymers with distinct cation binding properties, i.e., poly-pentafluorostyrene and polystyrene, in aqueous media using single-molecule force spectroscopy and nuclear magnetic resonance measurement. We found that the interaction strengths linearly depend on the cation concentrations, following the order of Li^{+}<NH_{4}^{+}<Na^{+}<K^{+}. The binding energies are 0.03-0.23 kJ mol^{-1} M^{-1}. This order is distinct from the strength of cation-π interactions in gas phase and may be caused by the different dehydration ability of the cations. Taken together, our method provides a unique perspective to investigate cation-π interactions under physiologically relevant conditions.
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Affiliation(s)
- Weishuai Di
- Wenzhou Key Laboratory of Biophysics, Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325000, China
| | - Kai Xue
- Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China
- School of Physical and Mathematical Science Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore
| | - Jun Cai
- Department of Polymer Science and Engineering, State Key Laboratory of Coordination Chemistry, Collaborative Innovation Center of Chemistry for Life Sciences, School of Chemistry and Chemical Engineering, Nanjing University, 210023 Nanjing, China
| | - Zhenshu Zhu
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing 210093, China
| | - Zihan Li
- Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China
| | - Hui Fu
- Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China
| | - Hai Lei
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing 210093, China
| | - Wenbing Hu
- Department of Polymer Science and Engineering, State Key Laboratory of Coordination Chemistry, Collaborative Innovation Center of Chemistry for Life Sciences, School of Chemistry and Chemical Engineering, Nanjing University, 210023 Nanjing, China
| | - Chun Tang
- Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China
| | - Wei Wang
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing 210093, China
- Institute for Brain Sciences, Nanjing University, Nanjing 210093, China
- Chemistry and Biomedicine Innovation Center, Nanjing University, Nanjing 210093, China
| | - Yi Cao
- Wenzhou Key Laboratory of Biophysics, Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325000, China
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing 210093, China
- Institute for Brain Sciences, Nanjing University, Nanjing 210093, China
- Chemistry and Biomedicine Innovation Center, Nanjing University, Nanjing 210093, China
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5
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Alirezapour F, Keshavarz Y, Minaeifar AA, Khanmohammadi A. Structural analysis and electronic properties of transition metal ions (Ni2+, Fe2+, Mn+ and Co+) with psoralen biomolecule as an anticancer drug. J Organomet Chem 2022. [DOI: 10.1016/j.jorganchem.2022.122606] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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6
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Villegas-Escobar N, Toro-Labbé A, Schaefer HF. Contrasting the Mechanism of H 2 Activation by Monomeric and Potassium-Stabilized Dimeric Al I Complexes: Do Potassium Atoms Exert any Cooperative Effect? Chemistry 2021; 27:17369-17378. [PMID: 34613646 DOI: 10.1002/chem.202103082] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Indexed: 11/06/2022]
Abstract
Aluminyl anions are low-valent, anionic, and carbenoid aluminum species commonly found stabilized with potassium cations from the reaction of Al-halogen precursors and alkali compounds. These systems are very reactive toward the activation of σ-bonds and in reactions with electrophiles. Various research groups have detected that the potassium atoms play a stabilization role via electrostatic and cation ⋯ π interactions with nearby (aromatic)-carbocyclic rings from both the ligand and from the reaction with unsaturated substrates. Since stabilizing K⋯H bonds are witnessed in the activation of this class of molecules, we aim to unveil the role of these metals in the activation of the smaller and less polarizable H2 molecule, together with a comprehensive characterization of the reaction mechanism. In this work, the activation of H2 utilizing a NON-xanthene-Al dimer, [K{Al(NON)}]2 (D) and monomeric, [Al(NON)]- (M) complexes are studied using density functional theory and high-level coupled-cluster theory to reveal the potential role of K+ atoms during the activation of this gas. Furthermore, we aim to reveal whether D is more reactive than M (or vice versa), or if complicity between the two monomer units exits within the D complex toward the activation of H2 . The results suggest that activation energies using the dimeric and monomeric complexes were found to be very close (around 33 kcal mol-1 ). However, a partition of activation energies unveiled that the nature of the energy barriers for the monomeric and dimeric complexes are inherently different. The former is dominated by a more substantial distortion of the reactants (and increased interaction energies between them). Interestingly, during the oxidative addition, the distortion of the Al complex is minimal, while H2 distorts the most, usually over 0.77 Δ E d i s t ≠ . Overall, it is found here that electrostatic and induction energies between the complexes and H2 are the main stabilizing components up to the respective transition states. The results suggest that the K+ atoms act as stabilizers of the dimeric structure, and their cooperative role on the reaction mechanism may be negligible, acting as mere spectators in the activation of H2 . Cooperation between the two monomers in D is lacking, and therefore the subsequent activation of H2 is wholly disengaged.
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Affiliation(s)
- Nery Villegas-Escobar
- Centro Integrativo de Biología y Química Aplicada (CIBQA), Universidad Bernardo O'Higgins, General Gana 1702, Santiago, 8370854, Chile
| | - Alejandro Toro-Labbé
- Laboratorio de Química Teórica Computacional (QTC), Facultad de Química, Pontificia Universidad Católica de Chile, Avenida Vicuña Mackenna 4860, Santiago, Chile
| | - Henry F Schaefer
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia, 30602, USA
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7
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Alirezapour F, Khanmohammadi A. The effect of cation-π interactions on the stability and electronic properties of anticancer drug Altretamine: a theoretical study. Acta Crystallogr C Struct Chem 2020; 76:982-991. [PMID: 33016269 DOI: 10.1107/s2053229620012589] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 09/15/2020] [Indexed: 11/10/2022] Open
Abstract
The present work utilizes density functional theory (DFT) calculations to study the influence of cation-π interactions on the electronic properties of the complexes formed by Altretamine [2,4,6-tris(dimethylamino)-1,3,5-triazine], an anticancer drug, with mono- and divalent (Li+, Na+, K+, Be2+, Mg2+ and Ca2+) metal cations. The structures were optimized with the M06-2X method and the 6-311++G(d,p) basis set in the gas phase and in solution. The theory of `Atoms in Molecules' (AIM) was applied to study the nature of the interactions by calculating the electron density ρ(r) and its Laplacian at the bond critical points. The charge-transfer process during complexation was evaluated using natural bond orbital (NBO) analysis. The results of DFT calculations demonstrate that the strongest/weakest interactions belong to Be2+/K+ complexes. There are good correlations between the achieved densities and the amounts of charge transfer with the interaction energies. Finally, the stability and reactivity of the cation-π interactions can be determined by quantum chemical computation based on the molecular orbital (MO) theory.
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Affiliation(s)
- Fahimeh Alirezapour
- Department of Chemistry, Payame Noor University, PO Box 19395-3697 Tehran, Iran
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8
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Petrushenko I, Shipitsin N, Petrushenko K. Cation-π interactions of inorganic benzenes with Li, Na, and Mg cations: Theoretical insights. INORG CHEM COMMUN 2020. [DOI: 10.1016/j.inoche.2020.108043] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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9
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Ab initio study of aerogen-bonds between some heterocyclic compounds of benzene with the noble gas elements (Ne, Ar, and Kr). Struct Chem 2020. [DOI: 10.1007/s11224-019-01416-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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10
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Cabaleiro-Lago EM, Rodríguez-Otero J. Curvature and size effects hinder halogen bonds with extended π systems. Phys Chem Chem Phys 2020; 22:21988-22002. [DOI: 10.1039/d0cp03466e] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The curvature of aromatic systems strengthens the interaction by the concave face while it weakens by the convex one. Parallel structures are favoured over halogen bonded ones.
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Affiliation(s)
- Enrique M. Cabaleiro-Lago
- Departamento de Química Física
- Facultade de Ciencias
- Universidade de Santiago de Compostela
- Campus de Lugo
- Av. Alfonso X El Sabio
| | - Jesús Rodríguez-Otero
- Departamento de Química Física
- Facultade de Química
- Universidade de Santiago de Compostela
- 15782 Santiago de Compostela
- Spain
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11
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Orabi EA, Davis RL, Lamoureux G. Drude polarizable force field for cation–π interactions of alkali and quaternary ammonium ions with aromatic amino acid side chains. J Comput Chem 2019; 41:472-481. [DOI: 10.1002/jcc.26084] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Revised: 08/14/2019] [Accepted: 09/16/2019] [Indexed: 11/08/2022]
Affiliation(s)
- Esam A. Orabi
- Department of ChemistryFaculty of Science, Assiut University Assiut 71516 Egypt
- Department of ChemistryUniversity of Manitoba Winnipeg Manitoba R3T 2N2 Canada
| | - Rebecca L. Davis
- Department of ChemistryUniversity of Manitoba Winnipeg Manitoba R3T 2N2 Canada
| | - Guillaume Lamoureux
- Department of Chemistry and Center for Computational and Integrative Biology (CCIB)Rutgers University Camden New Jersey 08102
- Centre for Research in Molecular Modeling (CERMM), Concordia University Montréal Québec H4B 1R6 Canada
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12
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Yourdkhani S, Chojecki M, Korona T. Substituent effects in the so-called cationπ interaction of benzene and its boron-nitrogen doped analogues: overlooked role of σ-skeleton. Phys Chem Chem Phys 2019; 21:6453-6466. [PMID: 30839951 DOI: 10.1039/c8cp04962a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Despite massive efforts to pinpoint the substituent effects in the so-called cationπ systems, no consensus has been yet reached on how substituents exercise their effects in the interaction of the aromatic molecule with the metal ion. The π-polarization (the Hunter model) and the direct local effect (the Wheeler-Houk model) are two lines of thought applied to this problem, but the justification of both approaches is based on insufficiently proven assumptions and approximations. In order to shed more light on this issue we propose a new approach which enables us to gauge directly the energetic trends resulting from the interaction of the ring with the cation. In our method we add one more partitioning level to the interacting quantum atoms (IQA) scheme and decompose the IQA interaction energies into contributions resulting from σ and π electron densities of the aromatic ring. The new approach, which is named partitioned-IQA, abbreviated as p-IQA, has been applied to complexes of derivatives of benzene or azaborine interacting with a sodium cation. The p-IQA approach reveals that in these systems both σ and π electronic moieties are polarized. Interestingly, for the majority of cases the σ-polarization outweighs the π one, contrary to the Hunter model. However, the Wheeler-Houk model is not precise, either, since the σ-polarization shows some degree of non-locality. In addition, the substituents are found to have a negligible influence on the ring orbital-overlapping capability, i.e. the covalency. Therefore, the substituent effect in the cationπ interaction is a nonlocal classical effect, indicating that neither Hunter model nor Wheeler-Houk model is able to fully describe all the aspects of the substituent effects. The p-IQA conclusions for the considered systems have been compared with the results from the functional-group SAPT (F-SAPT) method. We believe that the presented partitioning in the IQA framework will provide a deeper insight into the substituent effects in the cationπ interactions, which is beyond the σ-π atomic charge population separation.
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Affiliation(s)
- Sirous Yourdkhani
- Department of Chemical Physics and Optics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 3, CZ-12116 Prague 2, Czech Republic.
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Yourdkhani S, Chojecki M, Korona T. Interaction of Non-polarizable Cations with Azaborine Isomers and Their Mono-Substituted Derivatives: Position, Induction, and Non-Classical Effects Matter. Chemphyschem 2018; 19:3092-3106. [DOI: 10.1002/cphc.201800691] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Indexed: 12/14/2022]
Affiliation(s)
- Sirous Yourdkhani
- Department of Chemical Physics and Optics; Faculty of Mathematics and Physics; Charles University; Ke Karlovu 3, CZ- 12116 Prague 2 Czech Republic
- Faculty of Chemistry; University of Warsaw; ul. Pasteura 1 02-093 Warsaw Poland
| | - Michał Chojecki
- Faculty of Chemistry; University of Warsaw; ul. Pasteura 1 02-093 Warsaw Poland
| | - Tatiana Korona
- Faculty of Chemistry; University of Warsaw; ul. Pasteura 1 02-093 Warsaw Poland
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14
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Cabaleiro-Lago EM, Rodríguez-Otero J. On the Nature of σ-σ, σ-π, and π-π Stacking in Extended Systems. ACS OMEGA 2018; 3:9348-9359. [PMID: 31459068 PMCID: PMC6645327 DOI: 10.1021/acsomega.8b01339] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2018] [Accepted: 07/27/2018] [Indexed: 05/30/2023]
Abstract
Stacking interactions have been evaluated, employing computational methods, in dimers formed by analogous aliphatic and aromatic species of increasing size. Changes in stability as the systems become larger are mostly controlled by the balance of increasing repulsion and dispersion contributions, while electrostatics plays a secondary but relevant role. The interaction energy increases as the size of the system grows, but it does much faster in π-π dimers than in σ-π complexes and more remarkably than in σ-σ dimers. The main factor behind the larger stability of aromatic dimers compared to complexes containing aliphatic molecules is related to changes in the properties of the aromatic systems due to electron delocalization leading to larger dispersion contributions. Besides, an extra stabilization in π-π complexes is due to the softening of the repulsive wall in aromatic species that allows the molecules to come closer.
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Affiliation(s)
- Enrique M. Cabaleiro-Lago
- Facultade
de Ciencias (Dpto. de Química Física), Universidade de Santiago de Compostela, Campus de Lugo. Avda. Alfonso X El Sabio s/n, 27002 Lugo, Galicia, Spain
| | - Jesús Rodríguez-Otero
- CIQUS
and Facultade de Química (Dpto. de Química Física), Universidade de Santiago de Compostela, 15782 Santiago
de Compostela, Galicia, Spain
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15
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Wei D, Ma F, Wang R, Dou S, Cui P, Huang H, Ji J, Jia E, Jia X, Sajid S, Elseman AM, Chu L, Li Y, Jiang B, Qiao J, Yuan Y, Li M. Ion-Migration Inhibition by the Cation-π Interaction in Perovskite Materials for Efficient and Stable Perovskite Solar Cells. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018; 30:e1707583. [PMID: 29938843 DOI: 10.1002/adma.201707583] [Citation(s) in RCA: 108] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2017] [Revised: 04/20/2018] [Indexed: 05/18/2023]
Abstract
Migration of ions can lead to photoinduced phase separation, degradation, and current-voltage hysteresis in perovskite solar cells (PSCs), and has become a serious drawback for the organic-inorganic hybrid perovskite materials (OIPs). Here, the inhibition of ion migration is realized by the supramolecular cation-π interaction between aromatic rubrene and organic cations in OIPs. The energy of the cation-π interaction between rubrene and perovskite is found to be as strong as 1.5 eV, which is enough to immobilize the organic cations in OIPs; this will thus will lead to the obvious reduction of defects in perovskite films and outstanding stability in devices. By employing the cation-immobilized OIPs to fabricate perovskite solar cells (PSCs), a champion efficiency of 20.86% and certified efficiency of 20.80% with negligible hysteresis are acquired. In addition, the long-term stability of cation-immobilized PSCs is improved definitely (98% of the initial efficiency after 720 h operation), which is assigned to the inhibition of ionic diffusions in cation-immobilized OIPs. This cation-π interaction between cations and the supramolecular π system enhances the stability and the performance of PSCs efficiently and would be a potential universal approach to get the more stable perovskite devices.
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Affiliation(s)
- Dong Wei
- State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing, 102206, China
| | - Fusheng Ma
- Key Lab of Organic Optoelectronics and Molecular Engineering of Ministry of Education, Department of Chemistry, Tsinghua University, Beijing, 100084, China
| | - Rui Wang
- Key Lab of Organic Optoelectronics and Molecular Engineering of Ministry of Education, Department of Chemistry, Tsinghua University, Beijing, 100084, China
| | - Shangyi Dou
- State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing, 102206, China
| | - Peng Cui
- State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing, 102206, China
| | - Hao Huang
- State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing, 102206, China
| | - Jun Ji
- State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing, 102206, China
| | - Endong Jia
- Key Laboratory of Solar Thermal Energy and Photovoltaic System, Institute of Electrical Engineering, Chinese Academy of Sciences, Beijing, 100190, China
| | - Xiaojie Jia
- Key Laboratory of Solar Thermal Energy and Photovoltaic System, Institute of Electrical Engineering, Chinese Academy of Sciences, Beijing, 100190, China
| | - Sajid Sajid
- State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing, 102206, China
| | - Ahmed Mourtada Elseman
- State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing, 102206, China
- Electronic and Magnetic Materials Department, Central Metallurgical Research and Development Institute (CMRDI), PO Box 87 Helwan, 1, Elfelezat Street, El-Tebbin, 11421, Cairo, Egypt
| | - Lihua Chu
- State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing, 102206, China
| | - Yingfeng Li
- State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing, 102206, China
| | - Bing Jiang
- State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing, 102206, China
| | - Juan Qiao
- Key Lab of Organic Optoelectronics and Molecular Engineering of Ministry of Education, Department of Chemistry, Tsinghua University, Beijing, 100084, China
| | - Yongbo Yuan
- Hunan Key Laboratory of Super-microstructure and Ultrafast Process, School of Physics and Electronics, Central South University, Hunan, 410083, P. R. China
| | - Meicheng Li
- State Key Laboratory of Alternate Electrical Power System with Renewable Energy Sources, School of Renewable Energy, North China Electric Power University, Beijing, 102206, China
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16
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Zhang Y, Chen S, Ying F, Su P, Wu W. Valence Bond Based Energy Decomposition Analysis Scheme and Its Application to Cation−π Interactions. J Phys Chem A 2018; 122:5886-5894. [DOI: 10.1021/acs.jpca.8b04201] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Yang Zhang
- The State Key Laboratory of Physical Chemistry of Solid Surfaces, Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, iChEM, and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - Sifeng Chen
- The State Key Laboratory of Physical Chemistry of Solid Surfaces, Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, iChEM, and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - Fuming Ying
- The State Key Laboratory of Physical Chemistry of Solid Surfaces, Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, iChEM, and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - Peifeng Su
- The State Key Laboratory of Physical Chemistry of Solid Surfaces, Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, iChEM, and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
| | - Wei Wu
- The State Key Laboratory of Physical Chemistry of Solid Surfaces, Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, iChEM, and College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, China
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17
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Kumar K, Woo SM, Siu T, Cortopassi WA, Duarte F, Paton RS. Cation-π interactions in protein-ligand binding: theory and data-mining reveal different roles for lysine and arginine. Chem Sci 2018; 9:2655-2665. [PMID: 29719674 PMCID: PMC5903419 DOI: 10.1039/c7sc04905f] [Citation(s) in RCA: 179] [Impact Index Per Article: 25.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2017] [Accepted: 01/20/2018] [Indexed: 12/22/2022] Open
Abstract
The interactions of neutral aromatic ligands with cationic arginine, histidine and lysine amino acid residues have been studied with ab initio calculations, symmetry adapted perturbation theory (SAPT), and a systematic meta-analysis of X-ray structures.
We have studied the cation–π interactions of neutral aromatic ligands with the cationic amino acid residues arginine, histidine and lysine using ab initio calculations, symmetry adapted perturbation theory (SAPT), and a systematic meta-analysis of all available Protein Data Bank (PDB) X-ray structures. Quantum chemical potential energy surfaces (PES) for these interactions were obtained at the DLPNO-CCSD(T) level of theory and compared against the empirical distribution of 2012 unique protein–ligand cation–π interactions found in X-ray crystal structures. We created a workflow to extract these structures from the PDB, filtering by interaction type and residue pKa. The gas phase cation–π interaction of lysine is the strongest by more than 10 kcal mol–1, but the empirical distribution of 582 X-ray structures lies away from the minimum on the interaction PES. In contrast, 1381 structures involving arginine match the underlying calculated PES with good agreement. SAPT analysis revealed that underlying differences in the balance of electrostatic and dispersion contributions are responsible for this behavior in the context of the protein environment. The lysine–arene interaction, dominated by electrostatics, is greatly weakened by a surrounding dielectric medium and causes it to become essentially negligible in strength and without a well-defined equilibrium separation. The arginine–arene interaction involves a near equal mix of dispersion and electrostatic attraction, which is weakened to a much smaller degree by the surrounding medium. Our results account for the paucity of cation–π interactions involving lysine, even though this is a more common residue than arginine. Aromatic ligands are most likely to interact with cationic arginine residues as this interaction is stronger than for lysine in higher polarity surroundings.
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Affiliation(s)
- Kiran Kumar
- Chemistry Research Laboratory , University of Oxford , 12 Mansfield Road , Oxford OX1 3TA , UK .
| | - Shin M Woo
- Chemistry Research Laboratory , University of Oxford , 12 Mansfield Road , Oxford OX1 3TA , UK .
| | - Thomas Siu
- Chemistry Research Laboratory , University of Oxford , 12 Mansfield Road , Oxford OX1 3TA , UK .
| | - Wilian A Cortopassi
- Chemistry Research Laboratory , University of Oxford , 12 Mansfield Road , Oxford OX1 3TA , UK .
| | - Fernanda Duarte
- EaStCHEM School of Chemistry , University of Edinburgh , Joseph Black Building, David Brewster Road , Edinburgh EH9 3FJ , UK .
| | - Robert S Paton
- Chemistry Research Laboratory , University of Oxford , 12 Mansfield Road , Oxford OX1 3TA , UK .
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18
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Demircan ÇA, Bozkaya U. Transition Metal Cation−π Interactions: Complexes Formed by Fe2+, Co2+, Ni2+, Cu2+, and Zn2+ Binding with Benzene Molecules. J Phys Chem A 2017; 121:6500-6509. [DOI: 10.1021/acs.jpca.7b05759] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Uğur Bozkaya
- Department of Chemistry, Hacettepe University, Ankara, 06800, Turkey
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19
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Cabaleiro-Lago EM, Rodríguez-Otero J. σ-σ, σ-π, and π-π Stacking Interactions between Six-Membered Cyclic Systems. Dispersion Dominates and Electrostatics Commands. ChemistrySelect 2017. [DOI: 10.1002/slct.201700671] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Enrique M. Cabaleiro-Lago
- Facultade de Ciencias (Dpto. de Química Física); Universidade de Santiago de Compostela; Avda. Alfonso X El Sabio s/n 27002 Lugo, Galicia Spain
| | - Jesús Rodríguez-Otero
- CIQUS and Facultade de Química (Dpto. de Química Física); Universidade de Santiago de Compostela; 15782 Santiago de Compostela, Galicia Spain)
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20
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Pinheiro S, Soteras I, Gelpí JL, Dehez F, Chipot C, Luque FJ, Curutchet C. Structural and energetic study of cation–π–cation interactions in proteins. Phys Chem Chem Phys 2017; 19:9849-9861. [DOI: 10.1039/c6cp08448f] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Statistical and energetic analysis of cation–π–cation motifs in protein structures suggests a potential stabilizing role in the protein fold.
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Affiliation(s)
- Silvana Pinheiro
- Departament de Farmàcia i Tecnologia Farmacèutica i Fisicoquímica and Institut de Biomedicina (IBUB)
- Facultat de Farmàcia i Ciències de l'Alimentació
- Universitat de Barcelona
- Barcelona
- Spain
| | - Ignacio Soteras
- Departament de Nutrició, Ciències de l'Alimentació i Gastronomia and Institut de Biomedicina (IBUB)
- Facultat de Farmàcia i Ciències de l'Alimentació
- Universitat de Barcelona
- Santa Coloma de Gramenet
- Spain
| | - Josep Lluis Gelpí
- Departament de Bioquímica i Biomedicina Molecular
- Facultat de Biologia
- Universitat de Barcelona
- Spain
| | - François Dehez
- Laboratoire International Associé Centre National de la Recherche Scientifique et University of Illinois at Urbana – Champaign
- Unité Mixte de Recherche No. 7565
- Université de Lorraine
- Vandoeuvre-lès-Nancy cedex
- France
| | - Christophe Chipot
- Laboratoire International Associé Centre National de la Recherche Scientifique et University of Illinois at Urbana – Champaign
- Unité Mixte de Recherche No. 7565
- Université de Lorraine
- Vandoeuvre-lès-Nancy cedex
- France
| | - F. Javier Luque
- Departament de Nutrició, Ciències de l'Alimentació i Gastronomia and Institut de Biomedicina (IBUB)
- Facultat de Farmàcia i Ciències de l'Alimentació
- Universitat de Barcelona
- Santa Coloma de Gramenet
- Spain
| | - Carles Curutchet
- Departament de Farmàcia i Tecnologia Farmacèutica i Fisicoquímica and Institut de Biomedicina (IBUB)
- Facultat de Farmàcia i Ciències de l'Alimentació
- Universitat de Barcelona
- Barcelona
- Spain
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21
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Carrazana-García JA, Cabaleiro-Lago EM, Rodríguez-Otero J. A theoretical study of complexes formed between cations and curved aromatic systems: electrostatics does not always control cation–π interaction. Phys Chem Chem Phys 2017; 19:10543-10553. [DOI: 10.1039/c7cp01491k] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Cation–π interactions in curved aromatic systems are not controlled by electrostatics; induction and dispersion dominate in most cases studied.
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Affiliation(s)
- Jorge A. Carrazana-García
- Departamento de Química Física
- Facultade de Ciencias
- Universidade de Santiago de Compostela
- Campus de Lugo
- Avenida Alfonso X El Sabio s/n
| | - Enrique M. Cabaleiro-Lago
- Departamento de Química Física
- Facultade de Ciencias
- Universidade de Santiago de Compostela
- Campus de Lugo
- Avenida Alfonso X El Sabio s/n
| | - Jesús Rodríguez-Otero
- Centro de investigación en Química Biolóxica e Materiais Moleculares
- CIQUS
- Universidade de Santiago de Compostela
- Rúa Jenaro de la Fuente s/n
- Santiago de Compostela
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22
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Tsuzuki S, Mandai T, Suzuki S, Shinoda W, Nakamura T, Morishita T, Ueno K, Seki S, Umebayashi Y, Dokko K, Watanabe M. Effect of the cation on the stability of cation–glyme complexes and their interactions with the [TFSA]− anion. Phys Chem Chem Phys 2017; 19:18262-18272. [DOI: 10.1039/c7cp02779f] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The interactions of glymes with alkali or alkaline earth metal cations depend strongly on the metal cations.
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23
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Khan HM, Grauffel C, Broer R, MacKerell AD, Havenith RWA, Reuter N. Improving the Force Field Description of Tyrosine-Choline Cation-π Interactions: QM Investigation of Phenol-N(Me) 4+ Interactions. J Chem Theory Comput 2016; 12:5585-5595. [PMID: 27682345 PMCID: PMC5148683 DOI: 10.1021/acs.jctc.6b00654] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Cation-π interactions between tyrosine amino acids and compounds containing N,N,N-trimethylethanolammonium (N(CH3)3) are involved in the recognition of histone tails by chromodomains and in the recognition of phosphatidylcholine (PC) phospholipids by membrane-binding proteins. Yet, the lack of explicit polarization or charge transfer effects in molecular mechanics force fields raises questions about the reliability of the representation of these interactions in biomolecular simulations. Here, we investigate the nature of phenol-tetramethylammonium (TMA) interactions using quantum mechanical (QM) calculations, which we also use to evaluate the accuracy of the additive CHARMM36 and Drude polarizable force fields in modeling tyrosine-choline interactions. We show that the potential energy surface (PES) obtained using SAPT2+/aug-cc-pVDZ compares well with the large basis-set CCSD(T) PES when TMA approaches the phenol ring perpendicularly. Furthermore, the SAPT energy decomposition reveals comparable contributions from electrostatics and dispersion in phenol-TMA interactions. We then compared the SAPT2+/aug-cc-pVDZ PES obtained along various approach directions to the corresponding PES obtained with CHARMM, and we show that the force field accurately reproduces the minimum distances while the interaction energies are underestimated. The use of the Drude polarizable force field significantly improves the interaction energies but decreases the agreement on distances at energy minima. The best agreement between force field and QM PES is obtained by modifying the Lennard-Jones terms for atom pairs involved in the phenol-TMA cation-π interactions. This is further shown to improve the correlation between the occupancy of tyrosine-choline cation-π interactions obtained from molecular dynamics simulations of a bilayer-bound bacterial phospholipase and experimental affinity data of the wild-type protein and selected mutants.
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Affiliation(s)
- Hanif M Khan
- Department of Molecular Biology, University of Bergen , N-5020 Bergen, Norway
- Computational Biology Unit, Department of Informatics, University of Bergen , N-5020 Bergen, Norway
| | - Cédric Grauffel
- Institute of Biomedical Sciences, Academia Sinica , Taipei 11529, Taiwan
| | | | - Alexander D MacKerell
- Department of Pharmaceutical Sciences, University of Maryland School of Pharmacy , Baltimore, Maryland 21201, United States
| | - Remco W A Havenith
- Ghent Quantum Chemistry Group, Department of Inorganic and Physical Chemistry, Ghent University , 9000 Ghent, Belgium
| | - Nathalie Reuter
- Department of Molecular Biology, University of Bergen , N-5020 Bergen, Norway
- Computational Biology Unit, Department of Informatics, University of Bergen , N-5020 Bergen, Norway
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24
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Matczak P. Theoretical insight into the interaction between SnX2 (X = H, F, Cl, Br, I) and benzene. J Mol Model 2016; 22:208. [PMID: 27525639 PMCID: PMC4985535 DOI: 10.1007/s00894-016-3053-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2016] [Accepted: 06/28/2016] [Indexed: 11/26/2022]
Abstract
For a series of five model complexes composed of a singlet SnX2 molecule (X = H, F, Cl, Br, I) and a benzene molecule, the first-principles calculations of their energetics and the analysis of their electron density topology have been performed. The CCSD(T)/CBS interaction energy between SnX2 and C6H6 fall into the range between −10.0 and −11.2 kcal/mol, which indicates that the complexes are rather weakly bound. The relevant role of electrostatic and dispersion contributions to the interaction energy between SnX2 and C6H6 is highlighted in the results obtained from the symmetry-adapted perturbation theory (SAPT). The electron density topological analysis has been carried out using the quantum theory of atoms in molecules (QTAIM) and the noncovalent interactions (NCI) visualization index. Both QTAIM and NCI prove the closed-shell, noncovalent and attractive character of the interaction. A very small charge transfer from C6H6 to SnX2 has been detected. The formation of the five complexes is accompanied by the electron density deformations that are spatially restricted mostly to the region around the Sn atom and its adjacent C atom. The results presented in this work shed some light on the nature of the interactions associated with crystalline structural motifs involving low-valent tin complexed with neutral aryl rings.
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Affiliation(s)
- Piotr Matczak
- Department of Theoretical and Structural Chemistry, Faculty of Chemistry, University of Łódź, Pomorska 163/165, 90-236, Lodz, Poland.
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25
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Singh SK, Das A. The n → π* interaction: a rapidly emerging non-covalent interaction. Phys Chem Chem Phys 2016; 17:9596-612. [PMID: 25776003 DOI: 10.1039/c4cp05536e] [Citation(s) in RCA: 197] [Impact Index Per Article: 21.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
This perspective describes the current status of a recently discovered non-covalent interaction named as the n → π* interaction, which is very weak and counterintuitive in nature. In this review, we have provided a brief overview of the widespread presence of this interaction in biomacromolecules, small biomolecules and materials, as well as the physical nature of this interaction explored using various experimental and theoretical techniques. It has been found that this interaction is equally important to other non-covalent interactions for the stability and specific structures of biomolecules and materials. An in-depth understanding of this interaction can help in designing more efficient functional materials as well as drugs. The review also provides a future outlook in terms of exploring the detailed functional role of this interaction in biological processes and its direct spectroscopic evidence, which other commonly known non-covalent interactions (conventional hydrogen bonding, π-hydrogen bonding, π-stacking, etc.) have.
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Affiliation(s)
- Santosh K Singh
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Dr. Homi Bhabha Road, Pune-411008, Maharashtra, India.
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26
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Miao J, Song B, Gao Y. Is Aerogen-π Interaction Capable of Initiating the Noncovalent Chemistry of Group 18? Chem Asian J 2015; 10:2615-8. [PMID: 26282579 DOI: 10.1002/asia.201500785] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2015] [Indexed: 01/18/2023]
Abstract
The interactions between atoms of noble gases and π systems are generally considered as van der Waals interaction, which have not attracted attention yet. Herein, we present high-level ab initio calculations to show the unexpected noncovalent interaction between a covalently bonded noble gas atom and a delocalized aromatic π electron using XeO3⋅benzene as the prototype. The CCSD(T)/CBS reference data show its strength amounting to -10.2 kcal mol(-1), comparable to a typical H-bond or an anion-π interaction. The energy decomposition analysis reveals that the aerogen-π interaction is favored by the electrostatic interaction (27.7%), the induction (13.4%), and the dispersion (21.6%). This interaction may prompt us to consider the noncovalent chemistry of aerogen derivatives in the near future.
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Affiliation(s)
- Junjian Miao
- Division of Interfacial Water and Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, P. R. China
| | - Bo Song
- Division of Interfacial Water and Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, P. R. China
| | - Yi Gao
- Division of Interfacial Water and Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, P. R. China.
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27
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Paul AK, Kolakkandy S, Hase WL. Dynamics of Na+(Benzene) + Benzene Association and Ensuing Na+(Benzene)2* Dissociation. J Phys Chem A 2015; 119:7894-904. [DOI: 10.1021/acs.jpca.5b01922] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Amit K. Paul
- Department
of Chemistry and
Biochemistry Texas Tech University, Lubbock, Texas 79409, United States
| | - Sujitha Kolakkandy
- Department
of Chemistry and
Biochemistry Texas Tech University, Lubbock, Texas 79409, United States
| | - William L. Hase
- Department
of Chemistry and
Biochemistry Texas Tech University, Lubbock, Texas 79409, United States
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28
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González-Veloso I, Carrazana-García JA, Josa D, Rodríguez-Otero J, Cabaleiro-Lago EM. NCI analysis of the interaction cation⋯π in complexes with molecular bowls derived from fullerene. COMPUT THEOR CHEM 2015. [DOI: 10.1016/j.comptc.2014.10.012] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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29
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Kolakkandy S, Paul AK, Pratihar S, Kohale SC, Barnes GL, Wang H, Hase WL. Energy and temperature dependent dissociation of the Na+(benzene)1,2 clusters: Importance of anharmonicity. J Chem Phys 2015; 142:044306. [DOI: 10.1063/1.4906232] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Sujitha Kolakkandy
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - Amit K. Paul
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - Subha Pratihar
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - Swapnil C. Kohale
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - George L. Barnes
- Department of Chemistry and Biochemistry, Siena College, Loudonville, New York 12211-1462, USA
| | - Hai Wang
- Department of Mechanical Engineering, Stanford University, Stanford, California 94305, USA
| | - William L. Hase
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
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30
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Liu F, Du L, Gao J, Wang L, Song B, Liu C. Application of polarizable ellipsoidal force field model to pnicogen bonds. J Comput Chem 2015; 36:441-8. [DOI: 10.1002/jcc.23819] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2014] [Revised: 11/27/2014] [Accepted: 12/06/2014] [Indexed: 01/24/2023]
Affiliation(s)
- Fang Liu
- Key Lab of Colloid and Interface Chemistry; Ministry of Education, Institute of Theoretical Chemistry, School of Chemistry & Chemical Engineering; Shandong University; Jinan 250100 People's Republic of China
| | - Likai Du
- Laboratory of Bio-based Materials, Qingdao Institute of Bio-energy and Bioprocess Technology; Chinese Academy of Sciences; Qingdao 266101 Shandong People's Republic of China
| | - Jun Gao
- Key Lab of Colloid and Interface Chemistry; Ministry of Education, Institute of Theoretical Chemistry, School of Chemistry & Chemical Engineering; Shandong University; Jinan 250100 People's Republic of China
| | - Lili Wang
- Key Lab of Colloid and Interface Chemistry; Ministry of Education, Institute of Theoretical Chemistry, School of Chemistry & Chemical Engineering; Shandong University; Jinan 250100 People's Republic of China
| | - Bo Song
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences; Laboratory of Physical Biology; Shanghai 201800 People's Republic of China
| | - Chengbu Liu
- Key Lab of Colloid and Interface Chemistry; Ministry of Education, Institute of Theoretical Chemistry, School of Chemistry & Chemical Engineering; Shandong University; Jinan 250100 People's Republic of China
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31
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Rodríguez-Sanz AA, Cabaleiro-Lago EM, Rodríguez-Otero J. On the interaction between the imidazolium cation and aromatic amino acids. A computational study. Org Biomol Chem 2015; 13:7961-72. [DOI: 10.1039/c5ob01108f] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Phe, Tyr and Trp form parallel complexes with cation⋯π interactions. His complexes are the strongest, but without making contact with the aromatic cloud.
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Affiliation(s)
- Ana A. Rodríguez-Sanz
- Departamento de Química Física
- Facultade de Ciencias
- Universidade de Santiago de Compostela
- Lugo
- Spain
| | | | - Jesús Rodríguez-Otero
- Centro de investigación en Química Biolóxica e Materiais Moleculares
- CIQUS
- Universidade de Santiago de Compostela
- Santiago de Compostela
- Spain
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32
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Affiliation(s)
- J. Richard Premkumar
- Centre for Molecular Modelling, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007, India
| | - G. Narahari Sastry
- Centre for Molecular Modelling, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007, India
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33
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Kolakkandy S, Pratihar S, Aquino AJA, Wang H, Hase WL. Properties of Complexes Formed by Na+, Mg2+, and Fe2+ Binding with Benzene Molecules. J Phys Chem A 2014; 118:9500-11. [DOI: 10.1021/jp5029257] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sujitha Kolakkandy
- Department
of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Subha Pratihar
- Department
of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Adelia J. A. Aquino
- Department
of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Hai Wang
- Department
of Mechanical Engineering, Stanford University, Stanford, California 94305, United States
| | - William L. Hase
- Department
of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
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34
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Rodríguez-Sanz AA, Cabaleiro-Lago EM, Rodríguez-Otero J. Interaction between the guanidinium cation and aromatic amino acids. Phys Chem Chem Phys 2014; 16:22499-512. [DOI: 10.1039/c4cp02630f] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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35
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Campo-Cacharrón A, Cabaleiro-Lago EM, Rodríguez-Otero J. Interaction between ions and substituted buckybowls: A comprehensive computational study. J Comput Chem 2014; 35:1533-44. [DOI: 10.1002/jcc.23644] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2014] [Revised: 05/06/2014] [Accepted: 05/12/2014] [Indexed: 12/29/2022]
Affiliation(s)
- Alba Campo-Cacharrón
- Departamento de Química Física, Facultade de Ciencias; Universidade de Santiago de Compostela, Campus de Lugo; Avda. Alfonso X El Sabio s/n 27002 Lugo Galicia Spain
| | - Enrique M. Cabaleiro-Lago
- Departamento de Química Física, Facultade de Ciencias; Universidade de Santiago de Compostela, Campus de Lugo; Avda. Alfonso X El Sabio s/n 27002 Lugo Galicia Spain
| | - Jesús Rodríguez-Otero
- Departamento de Química Física, Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS); Universidade de Santiago de Compostela, Rúa Jenaro de la Fuente, s/n; Santiago de Compostela 15782 Spain
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36
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Campo-Cacharrón A, Cabaleiro-Lago EM, Carrazana-García JA, Rodríguez-Otero J. Interaction of aromatic units of amino acids with guanidinium cation: The interplay of π···π, XH···π, and M+···π contacts. J Comput Chem 2014; 35:1290-301. [DOI: 10.1002/jcc.23623] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2014] [Revised: 03/25/2014] [Accepted: 04/07/2014] [Indexed: 12/29/2022]
Affiliation(s)
- Alba Campo-Cacharrón
- Departamento de Química-Física, Facultade de ciencias; Universidade de Santiago de Compostela; Av. Alfonso X O Sabio, s/n 27002 Lugo Spain
| | - Enrique M. Cabaleiro-Lago
- Departamento de Química-Física, Facultade de ciencias; Universidade de Santiago de Compostela; Av. Alfonso X O Sabio, s/n 27002 Lugo Spain
| | - Jorge A. Carrazana-García
- Departamento de Química-Física, Facultade de ciencias; Universidade de Santiago de Compostela; Av. Alfonso X O Sabio, s/n 27002 Lugo Spain
| | - Jesús Rodríguez-Otero
- Departamento de Química-Física, Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS); Universidade de Santiago de Compostela; Rúa Jenaro de la Fuente, s/n 15782 Santiago de Compostela Spain
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37
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Rodríguez-Sanz AA, Cabaleiro-Lago EM, Rodríguez-Otero J. Effect of stepwise microhydration on the guanidinium···π interaction. J Mol Model 2014; 20:2209. [PMID: 24691534 DOI: 10.1007/s00894-014-2209-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2014] [Accepted: 03/10/2014] [Indexed: 10/25/2022]
Abstract
The characteristics of the interaction of microhydrated guanidinium cation with the aromatic moieties present in the aromatic amino acids side chains have been studied by means of computational methods. The most stable minima found for non-hydrated complexes correspond in all cases to structures with guanidinium oriented toward the ring and interacting by means of N-H···π hydrogen bonds. The interaction becomes stronger when going from benzene (-14 kcal mol⁻¹) to phenol (-17 kcal mol⁻¹) to indole (-21 kcal mol⁻¹). These complexes are held together mainly by electrostatics, but with important contributions from induction and dispersion. The presence of a small number of water molecules significantly affects the characteristics of the complexes. Hydrogen bonds formed by water with the cation, another water molecule, or the aromatic units become more and more similar in intensity as water molecules are included in the complex, leading to a great variety of minima with similar stability but showing very different structural patterns. The behavior is similar with the three aromatic units, the differences in stability mainly being a consequence of the different strength of the cation···π contact.
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Affiliation(s)
- Ana A Rodríguez-Sanz
- Departamento de Química Física, Facultade de Ciencias, Universidade de Santiago de Compostela, Campus de Lugo. Avda. Alfonso X El Sabio s/n, 27002, Lugo, Spain
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38
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Roles of electrostatic interaction and dispersion in CH···CH, CH···π, and π···π ethylene dimers. J Mol Model 2014; 20:2185. [DOI: 10.1007/s00894-014-2185-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2013] [Accepted: 02/17/2014] [Indexed: 11/29/2022]
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39
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Wireduaah S, Parker TM, Bagwill C, Kirkpatrick CC, Lewis M. Predicting the cation–π binding of substituted benzenes: energy decomposition calculations and the development of a cation–π substituent constant. RSC Adv 2014. [DOI: 10.1039/c4ra08638d] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
This work proposes a new substituent constant,Π+, to describe cation–π binding using computational methods at the MP2(full)/6-311++G** level of theory with Symmetry Adapted Perturbation Theory (SAPT) calculations on selected cation–π complexes.
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Affiliation(s)
| | | | | | | | - Michael Lewis
- Department of Chemistry
- Saint Louis University
- St. Louis, USA
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40
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Bi F, Gao J, Wang L, Du L, Song B, Liu C. Polarization-enhanced bonding process of halogen bond, a theoretical study on F–H/F–X (X=F,Cl,Br,I) and ammonia. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2013.09.006] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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41
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Ansorg K, Tafipolsky M, Engels B. Cation−π Interactions: Accurate Intermolecular Potential from Symmetry-Adapted Perturbation Theory. J Phys Chem B 2013; 117:10093-102. [DOI: 10.1021/jp403578r] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Kay Ansorg
- Institut
für Physikalische und Theoretische
Chemie, Universität Würzburg, Campus Hubland Nord, Emil-Fischer-Strasse 42, D-97074 Würzburg,
Germany
| | - Maxim Tafipolsky
- Institut
für Physikalische und Theoretische
Chemie, Universität Würzburg, Campus Hubland Nord, Emil-Fischer-Strasse 42, D-97074 Würzburg,
Germany
| | - Bernd Engels
- Institut
für Physikalische und Theoretische
Chemie, Universität Würzburg, Campus Hubland Nord, Emil-Fischer-Strasse 42, D-97074 Würzburg,
Germany
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42
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Marques JMC, Llanio-Trujillo JL, Albertí M, Aguilar A, Pirani F. Microsolvation of the potassium ion with aromatic rings: comparison between hexafluorobenzene and benzene. J Phys Chem A 2013; 117:8043-53. [PMID: 23869742 DOI: 10.1021/jp405295b] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We employ a recently developed methodology to study structural and energetic properties of the first solvation shells of the potassium ion in nonpolar environments due to aromatic rings, which is important to understand the selectivity of several biochemical phenomena. Our evolutionary algorithm is used in the global optimization study of clusters formed of K(+) solvated with hexafluorobenzene (HFBz) molecules. The global intermolecular interaction for these clusters has been decomposed in HFBz-HFBz and in K(+)-HFBz contributions, using a potential model based on different decompositions of the molecular polarizability of hexafluorobenzene. Putative global minimum structures of microsolvation clusters up to 21 hexafluorobenzene molecules were obtained and compared with the analogous K(+)-benzene clusters reported in our previous work (J. Phys. Chem. A 2012, 116, 4947-4956). We have found that both K(+)-(Bz)n and K(+)-(HFBz)n clusters show a strong magic number around the closure of the first solvation shell. Nonetheless, all K(+)-benzene clusters have essentially the same first solvation shell geometry with four solvent molecules around the ion, whereas the corresponding one for K(+)-(HFBz)n is completed with nine HFBz species, and its structural motif varies as n increases. This is attributed to the ion-solvent interaction that has a larger magnitude for K(+)-Bz than in the case of K(+)-HFBz. In addition, the ability of having more HFBz than Bz molecules around K(+) in the first solvation shell is intimately related to the inversion in the sign of the quadrupole moment of the two solvent species, which leads to a distinct ion-solvent geometry of approach.
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Affiliation(s)
- J M C Marques
- Departamento de Química, Universidade de Coimbra, 3004-535 Coimbra, Portugal.
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43
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Substituted benzo[i]phenanthridines as promising topoisomerase-I non-camptothecin targeting agents: an experimental and theoretical study. Med Chem Res 2013. [DOI: 10.1007/s00044-013-0515-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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44
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Mahadevi AS, Sastry GN. Cation-π interaction: its role and relevance in chemistry, biology, and material science. Chem Rev 2012; 113:2100-38. [PMID: 23145968 DOI: 10.1021/cr300222d] [Citation(s) in RCA: 780] [Impact Index Per Article: 60.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- A Subha Mahadevi
- Molecular Modeling Group, CSIR-Indian Institute of Chemical Technology Tarnaka, Hyderabad 500 607, Andhra Pradesh, India
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45
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Johnson ER, Otero-de-la-Roza A. Adsorption of Organic Molecules on Kaolinite from the Exchange-Hole Dipole Moment Dispersion Model. J Chem Theory Comput 2012; 8:5124-31. [DOI: 10.1021/ct3006375] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Affiliation(s)
- Erin R. Johnson
- Chemistry and Chemical Biology, School of
Natural Sciences, University of California, Merced, 5200 North Lake Road,
Merced, California 95343, United States
| | - Alberto Otero-de-la-Roza
- Chemistry and Chemical Biology, School of
Natural Sciences, University of California, Merced, 5200 North Lake Road,
Merced, California 95343, United States
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46
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Duan M, Song B, Shi G, Li H, Ji G, Hu J, Chen X, Fang H. Cation⊗3π: Cooperative Interaction of a Cation and Three Benzenes with an Anomalous Order in Binding Energy. J Am Chem Soc 2012; 134:12104-9. [DOI: 10.1021/ja302918t] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Manyi Duan
- School of Physics Science and
Technology, Sichuan University, Chengdu
610064, P.R. China
- Division
of Interfacial Water
and Laboratory of Physical Biology, Shanghai Institute of Applied
Physics, Chinese Academy of Sciences, Shanghai
201800, P.R. China
| | - Bo Song
- Division
of Interfacial Water
and Laboratory of Physical Biology, Shanghai Institute of Applied
Physics, Chinese Academy of Sciences, Shanghai
201800, P.R. China
| | - Guosheng Shi
- Division
of Interfacial Water
and Laboratory of Physical Biology, Shanghai Institute of Applied
Physics, Chinese Academy of Sciences, Shanghai
201800, P.R. China
| | - Haikuo Li
- Division
of Interfacial Water
and Laboratory of Physical Biology, Shanghai Institute of Applied
Physics, Chinese Academy of Sciences, Shanghai
201800, P.R. China
| | - Guangfu Ji
- School of Physics Science and
Technology, Sichuan University, Chengdu
610064, P.R. China
- National
Key Laboratory of Shock
Wave and Detonation Physics, Institute of Fluid Physics, China Academy of Engineering Physics, Mianyang 621900,
P.R. China
| | - Jun Hu
- Division
of Interfacial Water
and Laboratory of Physical Biology, Shanghai Institute of Applied
Physics, Chinese Academy of Sciences, Shanghai
201800, P.R. China
| | - Xiangrong Chen
- School of Physics Science and
Technology, Sichuan University, Chengdu
610064, P.R. China
| | - Haiping Fang
- Division
of Interfacial Water
and Laboratory of Physical Biology, Shanghai Institute of Applied
Physics, Chinese Academy of Sciences, Shanghai
201800, P.R. China
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47
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48
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Sayyed FB, Suresh CH. Accurate prediction of cation-π interaction energy using substituent effects. J Phys Chem A 2012; 116:5723-32. [PMID: 22616763 DOI: 10.1021/jp3034193] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Substituent effects on cation-π interactions have been quantified using a variety of Φ-X···M(+) complexes where Φ, X, and M(+) are the π-system, substituent, and cation, respectively. The cation-π interaction energy, E(M(+)), showed a strong linear correlation with the molecular electrostatic potential (MESP) based measure of the substituent effect, ΔV(min) (the difference between the MESP minimum (V(min)) on the π-region of a substituted system and the corresponding unsubstituted system). This linear relationship is E(M(+)) = C(M(+))(ΔV(min)) + E(M(+))' where C(M(+)) is the reaction constant and E(M(+))' is the cation-π interaction energy of the unsubstituted complex. This relationship is similar to the Hammett equation and its first term yields the substituent contribution of the cation-π interaction energy. Further, a linear correlation between C(M(+))() and E(M(+))()' has been established, which facilitates the prediction of C(M(+)) for unknown cations. Thus, a prediction of E(M(+)) for any Φ-X···M(+) complex is achieved by knowing the values of E(M(+))' and ΔV(min). The generality of the equation is tested for a variety of cations (Li(+), Na(+), K(+), Mg(+), BeCl(+), MgCl(+), CaCl(+), TiCl(3)(+), CrCl(2)(+), NiCl(+), Cu(+), ZnCl(+), NH(4)(+), CH(3)NH(3)(+), N(CH(3))(4)(+), C(NH(2))(3)(+)), substituents (N(CH(3))(2), NH(2), OCH(3), CH(3), OH, H, SCH(3), SH, CCH, F, Cl, COOH, CHO, CF(3), CN, NO(2)), and a large number of π-systems. The tested systems also include multiple substituted π-systems, viz. ethylene, acetylene, hexa-1,3,5-triene, benzene, naphthalene, indole, pyrrole, phenylalanine, tryptophan, tyrosine, azulene, pyrene, [6]-cyclacene, and corannulene and found that E(M)(+) follows the additivity of substituent effects. Further, the substituent effects on cationic sandwich complexes of the type C(6)H(6)···M(+)···C(6)H(5)X have been assessed and found that E(M(+)) can be predicted with 97.7% accuracy using the values of E(M(+))' and ΔV(min). All the Φ-X···M(+) systems showed good agreement between the calculated and predicted E(M(+))() values, suggesting that the ΔV(min) approach to substituent effect is accurate and useful for predicting the interactive behavior of substituted π-systems with cations.
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Affiliation(s)
- Fareed Bhasha Sayyed
- Chemical Sciences and Technology Division, National Institute for Interdisciplinary Science and Technology (CSIR), Trivandrum, India 695019
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49
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Carrazana-García JA, Rodríguez-Otero J, Cabaleiro-Lago EM. A Computational Study of Anion-Modulated Cation−π Interactions. J Phys Chem B 2012; 116:5860-71. [DOI: 10.1021/jp302271y] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jorge A. Carrazana-García
- Departamento de Química
Física, Facultade de Química, Universidade de Santiago de Compostela, Campus de Lugo, Avenida Alfonso
X El Sabio s/n 27002 Lugo, Spain
| | - Jesús Rodríguez-Otero
- Departamento de Química
Física, Facultade de Ciencias, Universidade de Santiago de Compostela, Avenida das Ciencias s/n, 15782
Santiago de Compostela, Spain
| | - Enrique M. Cabaleiro-Lago
- Departamento de Química
Física, Facultade de Química, Universidade de Santiago de Compostela, Campus de Lugo, Avenida Alfonso
X El Sabio s/n 27002 Lugo, Spain
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50
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Marques JMC, Llanio-Trujillo JL, Albertí M, Aguilar A, Pirani F. Alkali-ion microsolvation with benzene molecules. J Phys Chem A 2012; 116:4947-56. [PMID: 22515316 DOI: 10.1021/jp302136u] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
The target of this investigation is to characterize by a recently developed methodology, the main features of the first solvation shells of alkaline ions in nonpolar environments due to aromatic rings, which is of crucial relevance to understand the selectivity of several biochemical phenomena. We employ an evolutionary algorithm to obtain putative global minima of clusters formed with alkali-ions (M(+)) solvated with n benzene (Bz) molecules, i.e., M(+)-(Bz)(n). The global intermolecular interaction has been decomposed in Bz-Bz and in M(+)-Bz contributions, using a potential model based on different decompositions of the molecular polarizability of benzene. Specifically, we have studied the microsolvation of Na(+), K(+), and Cs(+) with benzene molecules. Microsolvation clusters up to n = 21 benzene molecules are involved in this work and the achieved global minimum structures are reported and discussed in detail. We observe that the number of benzene molecules allocated in the first solvation shell increases with the size of the cation, showing three molecules for Na(+) and four for both K(+) and Cs(+). The structure of this solvation shell keeps approximately unchanged as more benzene molecules are added to the cluster, which is independent of the ion. Particularly stable structures, so-called "magic numbers", arise for various nuclearities of the three alkali-ions. Strong "magic numbers" appear at n = 2, 3, and 4 for Na(+), K(+), and Cs(+), respectively. In addition, another set of weaker "magic numbers" (three per alkali-ion) are reported for larger nuclearities.
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Affiliation(s)
- J M C Marques
- Departamento de Química, Universidade de Coimbra, 3004-535 Coimbra, Portugal.
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