Latent porosity of planar tris(phenylisoxazolyl)benzene

Interest in developing separation systems for chemical entities based on crystalline molecules has provided momentum for the fabrication of synthetic porous materials showing selectivity in molecular encapsulation, such as metal-organic frameworks, covalent organic frameworks, hydrogen-bonded organic frameworks, zeolites, and macrocyclic molecular crystals. Among these, macrocyclic molecular crystals have generated renewed interest for use in separation systems. Selective encapsulation relies on the sizes, shapes, and dimensions of the pores present in the macrocyclic cavities; thus, nonmacrocyclic molecular crystals with high selectivity for molecular encapsulation via porosity-without-pore behaviors have not been studied. Here, we report that planar tris(phenylisoxazolyl)benzene forms porous molecular crystals possessing latent pores exhibiting porosity-without-pore behavior. After exposing the crystals to complementary guest molecules, the latent pores encapsulate cis- and trans-decalin while maintaining the structural rigidity responsible for the high selectivity. The encapsulation via porosity without pores is a kinetic process with remarkable selectivity for cis-decalin over trans-decalin with a cis-/trans-ratio of 96:4, which is confirmed by single-crystal X-ray diffraction and powder X-ray diffraction analyses. Hirshfeld surface analysis and fingerprint plots show that the latent intermolecular pores are rigidified by intermolecular dipole‒dipole and π-π stacking interactions, which determines the remarkable selectivity of molecular recognition.

Inclusion of Amine Isomers with Open-Chain Hosts Having a Partial Structure of p-tert-Butylthiacalixarene

Porous materials, which can capture a specific compound from a hard-to-separate molecular mixture, are strongly desired for practical separation and purification processes. Aiming to develop such materials, we have investigated the performance of our original host compounds, [3,3'-thiobis(5-tert-butyl-2-hydroxybenzene)-1,1'-diyl]diacetic acid (2) and its monopropyl ester (3), in discriminating among regio- or stereoisomers of three groups of amines, 2-, 3-, and 4-methylpyridine, 2-, 6-, and 8-methylquinoline, and cis- and trans-4-cyclohexanamine. Diacid 2 selectively included 4-methylpyridine in hexane and 3-methylpyridine in toluene in competitive inclusion among the three regioisomers. Mechanistic studies revealed that the inclusions of 3- and 4-methylpyridine are favored under kinetic and thermodynamic control, respectively. Solvent-dependent switching in guest selectivity was also observed in competitive inclusion among the methylquinoline isomers with diacid 2, whereas trans-4-methylcyclohexanamine was selectively included over the cis-isomer by monoester 3, as well as diacid 2, regardless of the solvent employed. X-ray crystallographic analysis of the resulting inclusion crystals suggests that the wide guest scope of the host compounds originates from their flexible ability to form complexes with amines.

Supramolecular-Macrocycle-Based Crystalline Organic Materials

Supramolecular macrocycles are well known as guest receptors in supramolecular chemistry, especially host-guest chemistry. In addition to their wide applications in host-guest chemistry and related areas, macrocycles have also been employed to construct crystalline organic materials (COMs) owing to their particular structures that combine both rigidity and adaptivity. There are two main types of supramolecular-macrocycle-based COMs: those constructed from macrocycles themselves and those prepared from macrocycles with other organic linkers. This review summarizes recent developments in supramolecular-macrocycle-based COMs, which are categorized by various types of macrocycles, including cyclodextrins, calixarenes, resorcinarenes, pyrogalloarenes, cucurbiturils, pillararenes, and others. Effort is made to focus on the structures of supramolecular-macrocycle-based COMs and their structure-function relationships. In addition, the application of supramolecular-macrocycle-based COMs in gas storage or separation, molecular separation, solid-state electrolytes, proton conduction, iodine capture, water or environmental treatment, etc., are also presented. Finally, perspectives and future challenges in the field of supramolecular-macrocycle-based COMs are discussed.

CO2 Capture on Functionalized Calixarenes: A Computational Study

High carbon emissions have shown a strong correlation with rising global temperatures as the world's climate undergoes a dramatic shift. Work to mitigate the potential damage using materials such as metal-organic frameworks (MOFs), covalent organic frameworks (COFs), and polymer membranes (PMs) has proven successful in small-scale approaches; however, research is still being performed to enhance the capabilities of these materials for use at an industrial scale. One strategy for increasing performance is to embed these materials with CO₂-philic molecules, which enhance selective binding over other gases. Calixarenes are promising candidates due to their large chalice shape, which allows for the possibility to bind multiple CO₂ molecules per site. In this study, a dataset including 40 functionalized calixarene structures and one unfunctionalized (bare) calixarene was constructed with an automated, high-throughput structure generation through directed modifications to a molecular scaffold. A conformational search based on molecular mechanics allowed the faster determination of optimal binding energies for a vast array of chemical functional groups with less computational effort. Density functional theory and symmetry-adapted perturbation theory calculations were performed for the exploration of their interactions with CO₂. Our work has identified new organic cages with increased CO₂-philicity. In four cases, CO₂ binding is stronger than 9.0 kcal/mol and very close to the targets set by previous studies. The nature of the noncovalent interactions for these cases is analyzed and discussed. Conclusions from this study can aid synthetic efforts for the next generation of functional materials.

Unraveling the Sorption Mechanism of CO2 in a Molecular Crystal without Intrinsic Porosity

The facile uptake of CO₂ gas in a nonporous molecular crystal constituted by long molecules with carbazole and ethynylphenyl moieties was reported in experiments recently. Herein, the mechanism of gas uptake by this crystal is elucidated using atomistic molecular simulations. The uptake of CO₂ is shown to be facilitated by (i) the capacity of the crystal to expand in volume because of weak intermolecular interactions, (ii) the parallel orientation of the long molecules in the crystal, and (iii) the ability of the molecule to marginally bend, yet not lose crystallinity because of the anchoring of the terminal carbazole groups. The retention of crystallinity upon sorption and desorption cycles is also demonstrated. At high enough pressures, near-neighbor CO₂ molecules sorbed in the crystal are found to be oriented parallel to each other.

High-temperature in situ crystallographic observation of reversible gas sorption in impermeable organic cages

Crystallographic observation of adsorbed gas molecules is a highly difficult task due to their rapid motion. Here, we report the in situ single-crystal and synchrotron powder X-ray observations of reversible CO2 sorption processes in an apparently nonporous organic crystal under varying pressures at high temperatures. The host material is formed by hydrogen bond network between 1,3,5-tris-(4-carboxyphenyl)benzene (H3BTB) and N,N-dimethylformamide (DMF) and by π-π stacking between the H3BTB moieties. The material can be viewed as a well-ordered array of cages, which are tight packed with each other so that the cages are inaccessible from outside. Thus, the host is practically nonporous. Despite the absence of permanent pathways connecting the empty cages, they are permeable to CO2 at high temperatures due to thermally activated molecular gating, and the weakly confined CO2 molecules in the cages allow direct detection by in situ single-crystal X-ray diffraction at 323 K. Variable-temperature in situ synchrotron powder X-ray diffraction studies also show that the CO2 sorption is reversible and driven by temperature increase. Solid-state magic angle spinning NMR defines the interactions of CO2 with the organic framework and dynamic motion of CO2 in cages. The reversible sorption is attributed to the dynamic motion of the DMF molecules combined with the axial motions/angular fluctuations of CO2 (a series of transient opening/closing of compartments enabling CO2 molecule passage), as revealed from NMR and simulations. This temperature-driven transient molecular gating can store gaseous molecules in ordered arrays toward unique collective properties and release them for ready use.

Structurally simple complexes of CO2

A wide range of structurally characterized adducts of CO₂are discussed in this review, from the strongly bound, charge assisted carbamate complexes through the weaker halide and pseudo-halide complexes to the weakest possible inclusion complexes.

Comparison of inclusion properties between p-tert-butylcalix[4]arene and p-tert-butylthiacalix[4]arene towards primary alcohols in crystals

Crystals of p-tert-butylcalix[4]arene (1) and p-tert-butylthiacalix[4]arene (2) exhibit distinct differences in inclusion properties toward primary alcohols, which originates from the difference in the crystal packing of the inclusion crystals.

Pillar[5]arene-based supramolecular organic frameworks for highly selective CO2-capture at ambient conditions

Low-density, solid-state, porous supramolecular organic frameworks are constructed using pillarenes. The frameworks have a honeycomb-like structure, permanent porosity, high thermal stability, and selective and reversible sorption properties toward CO2. The exceptionally selective CO2-sorption properties (375/1, 339/1) of one framework over N2 and CH4 indicate potential applications in CO2-capture for post-combustion power plants and natural gas sweetening.

Triple Guest Occupancy and Negative Compressibility in Hydrogen-Loaded β-Hydroquinone Clathrate

The molecular interactions and structural behavior of a previously unexplored clathrate system, hydrogen-loaded β-hydroquinone (β-HQ+H2), were investigated under high pressure with synchrotron X-ray diffraction and Raman/infrared spectroscopies. The β-HQ+H2 system exhibits coupling of two independently rare phenomena: multiple occupancy and negative compressibility. The number of H2 molecules per cavity increases from one to three, causing unit cell volume increase by way of unique crystallographic interstitial guest positioning. We anticipate these occupancy-derived trends may be general to a range of inclusion compounds and may aid the chemical and crystallographic design of both high-occupancy hydrogen storage clathrates and novel, variable-composition materials with tunable mechanical properties.

Computational studies of load-dependent guest dynamics and free energies of inclusion for CO2 in low-density p-tert-butylcalix[4]arene at loadings up to 2:1

The structure, dynamics, and free energies of absorption of CO(2) by a low-density structure (P4/n) of calixarene p-tert-butylalix[4]arene (TBC4) at loadings up to 2:1 CO(2):TBC4 have been studied by using molecular dynamics simulations with two sources of initial TBC4 structures (TBC4-T and TBC4-U). The CO(2)/TBC4 complex structure is very sensitive to the initial lattice spacing of TBC4. From the computed radial distribution functions of CO(2) molecules, a CO(2) dimer is observed for TBC4-T and a cage-interstitial CO(2) structure is suggested for TBC4-U. The dynamics of the CO(2) molecules show little initial TBC4 structural dependency. The free energy of inclusion for a single CO(2) in this TBC4 structure for various loadings is -4.0 kcal/mol at 300 K and -1.8 kcal/mol at 450 K, showing that CO(2) inclusion is favored. The fully loaded 1:1 CO(2):TBC4 system is slightly less favorable at -3.9 and -1.2 kcal/mol at 300 and 450 K, respectively. The first CO(2) added beyond 1:1 loading shows a significant drop in absorption energy to -1.9 and +1.9 kcal/mol at 300 and 450 K. These data are consistent with experimental results showing that low-density structures of TBC4 are able to absorb CO(2) at loadings greater than 1:1 but retention is lower than for 1:1 loaded systems indicating the free energy of inclusion for addition of the CO(2) above 1:1 is less favorable.