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DeLucia AA, Olshansky L. Carboxylate Shift Dynamics in Biomimetic Co 2(μ-OH) 2 Complexes. Inorg Chem 2024; 63:1109-1118. [PMID: 38170989 DOI: 10.1021/acs.inorgchem.3c03470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
Carboxylate shift mechanisms provide low-energy pathways to accommodate changes in oxidation state and coordination number required during catalysis in metalloenzyme active sites. These processes are challenging to observe in their native enzymes and molecular models can provide insight into their mechanistic details. We report here the direct observation of a carboxylate shift reaction in biomimetic yet structurally stable dicobalt complexes featuring both monodentate and bridging acetate ligands, as well as intramolecular hydrogen-bonding interactions. Subjecting the series of complexes [Co2(μ-OH)2(μ-1,3-OAc)(κ-OAc)2(pyR)4]PF6 ([1R]PF6, OAc = acetate, pyR = pyridine with para-R substituents: OMe, H, or CN) to a Lewis acid triggers conversion of a monodentate acetate to a μ-1,3 bridging mode, forming [Co2(μ-OH)2(μ-1,3-OAc)2(pyR)4]2+ ([2R]2+). [2R]2+ is susceptible to solvent binding, affording [Co2(μ-OH)2(μ-1,3-OAc)(κ-OAc)(MeCN)(pyR)4]2+ ([3R]2+) in MeCN. These reaction products and intermediates were isolated and characterized in the solid state by isotopic labeling and Fourier transform infrared (FTIR) spectroscopy, as well as by X-ray diffraction. The kinetics of the formation and decay of [1R]+, [2R]2+, and [3R]2+ were also examined in situ by 1H-NMR spectroscopy to provide a kinetic model for the carboxylate shift reaction. The rate constants extracted from global fit analyses of these reactions increase with increasing electron donation from R. Leveraging robust diamagnetic CoIII complexes, these studies provide mechanistic details of carboxylate shift reactivity and highlight the utility of ligand dynamicity in mediating the transient formation of unstable metal complexes.
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Affiliation(s)
- Alyssa A DeLucia
- Department of Chemistry, Center for Biophysics and Quantitative Biology, Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801-3028, United States
| | - Lisa Olshansky
- Department of Chemistry, Center for Biophysics and Quantitative Biology, Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801-3028, United States
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2
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Poptic AL, Chen YP, Chang T, Chen YS, Moore CE, Zhang S. Site-Differentiated Mn IIFe II Complex Reproducing the Selective Assembly of Biological Heterobimetallic Mn/Fe Cofactors. J Am Chem Soc 2023; 145:3491-3498. [PMID: 36749207 DOI: 10.1021/jacs.2c11930] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Class Ic ribonucleotide reductases (RNRIc) and R2-like ligand-binding oxidases (R2lox) are known to contain heterobimetallic MnIIFeII cofactors. How these enzymes assemble MnIIFeII cofactors has been a long-standing puzzle due to the weaker binding affinity of MnII versus FeII. In addition, the heterobimetallic selectivity of RNRIc and R2lox has yet to be reproduced with coordination complexes, leading to the hypothesis that RNRIc and R2lox overcome the thermodynamic preference for coordination of FeII over MnII with their carefully constructed three-dimensional protein structures. Herein, we report the selective formation of a heterobimetallic MnIIFeII complex accomplished in the absence of a protein scaffold. Treatment of the ligand Py4DMcT (L) with equimolar amounts of FeII and MnII along with two equivalents of acetate (OAc) affords [LMnIIFeII (OAc)2(OTf)]+ (MnIIFeII) in 80% yield, while the diiron complex [LFeIIFeII(OAc)2(OTf)]+ (FeIIFeII) is produced in only 8% yield. The formation of MnIIFeII is favored regardless of the order of addition of FeII and MnII sources. X-ray diffraction (XRD) of single crystals of MnIIFeII reveals an unsymmetrically coordinated carboxylate ligand─a primary coordination sphere feature shared by both RNRIc and R2lox that differentiates the two metal binding sites. Anomalous XRD studies confirm that MnIIFeII exhibits the same site selectivity as R2lox and RNRIc, with the FeII (d6) center preferentially occupying the distorted octahedral site. We conclude that the successful assembly of MnIIFeII originates from (1) Fe-deficient conditions, (2) site differentiation, and (3) the inability of ligand L to house a dimanganese complex.
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Affiliation(s)
- Anna L Poptic
- Department of Chemistry & Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
| | - Ying-Pin Chen
- ChemMatCARS, University of Chicago, Argonne, Illinois 60439, United States
| | - Tieyan Chang
- ChemMatCARS, University of Chicago, Argonne, Illinois 60439, United States
| | - Yu-Sheng Chen
- ChemMatCARS, University of Chicago, Argonne, Illinois 60439, United States
| | - Curtis E Moore
- Department of Chemistry & Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
| | - Shiyu Zhang
- Department of Chemistry & Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
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3
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Su SQ, Wu SQ, Baker ML, Bencok P, Azuma N, Miyazaki Y, Nakano M, Kang S, Shiota Y, Yoshizawa K, Kanegawa S, Sato O. Quenching and Restoration of Orbital Angular Momentum through a Dynamic Bond in a Cobalt(II) Complex. J Am Chem Soc 2020; 142:11434-11441. [DOI: 10.1021/jacs.0c02257] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- Sheng-Qun Su
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Shu-Qi Wu
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Michael L. Baker
- The University of Manchester at Harwell, Didcot, OX11 OFA, United Kingdom
- Department of Chemistry, The University of Manchester, Manchester M139PL, United Kingdom
| | - Peter Bencok
- Diamond Light Source, Science Division, Didcot OX11 0DE, United Kingdom
| | - Nobuaki Azuma
- Research Core for Interdisciplinary Science, Okayama University, 3-1-1 Tsushimanaka, Kita-ku, Okayama 700-8530, Japan
| | - Yuji Miyazaki
- Research Center for Thermal and Entropic Science, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Motohiro Nakano
- Research Center for Thermal and Entropic Science, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Soonchul Kang
- Graduate School of Engineering, Hiroshima University, 1-4-1 Kagamiyama, Higashi-Hiroshima, 739-8527, Japan
| | - Yoshihito Shiota
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Kazunari Yoshizawa
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Shinji Kanegawa
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Osamu Sato
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
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4
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Breibeck J, Bijelic A, Rompel A. Transition metal-substituted Keggin polyoxotungstates enabling covalent attachment to proteinase K upon co-crystallization. Chem Commun (Camb) 2019; 55:11519-11522. [DOI: 10.1039/c9cc05818d] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
POM-protein interaction: a series of 3d metal-substituted Keggin polyoxotungstates was co-crystallized with proteinase K, resulting in covalent bonds to aspartate protein side-chains as a desirable feature of these novel crystallization additives.
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Affiliation(s)
- Joscha Breibeck
- Universität Wien
- Fakultät für Chemie
- Institut für Biophysikalische Chemie
- 1090 Wien
- Austria
| | - Aleksandar Bijelic
- Universität Wien
- Fakultät für Chemie
- Institut für Biophysikalische Chemie
- 1090 Wien
- Austria
| | - Annette Rompel
- Universität Wien
- Fakultät für Chemie
- Institut für Biophysikalische Chemie
- 1090 Wien
- Austria
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5
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Schober A, Demeshko S, Meyer F. Spin State Variations and Spin-Crossover in Diiron(II) Complexes of Bis(pentadentate) Pyrazolate-Based Ligands. Z Anorg Allg Chem 2018. [DOI: 10.1002/zaac.201800148] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Anne Schober
- Universität Göttingen; Institut für Anorganische Chemie; Tammannstr. 4 37077 Göttingen Germany
| | - Serhiy Demeshko
- Universität Göttingen; Institut für Anorganische Chemie; Tammannstr. 4 37077 Göttingen Germany
| | - Franc Meyer
- Universität Göttingen; Institut für Anorganische Chemie; Tammannstr. 4 37077 Göttingen Germany
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6
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Zimmermann TP, Limpke T, Stammler A, Bögge H, Walleck S, Glaser T. Reversible Carboxylate Shift in a μ-Oxo Diferric Complex in Solution by Acid-/Base-Addition. Inorg Chem 2018; 57:5400-5405. [DOI: 10.1021/acs.inorgchem.8b00376] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Thomas Philipp Zimmermann
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Thomas Limpke
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Anja Stammler
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Hartmut Bögge
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Stephan Walleck
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
| | - Thorsten Glaser
- Lehrstuhl für Anorganische Chemie I, Fakultät für Chemie, Universität Bielefeld, Universitätsstrasse 25, D-33615 Bielefeld, Germany
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7
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Kindermann N, Schober A, Demeshko S, Lehnert N, Meyer F. Reductive Transformations of a Pyrazolate-Based Bioinspired Diiron–Dinitrosyl Complex. Inorg Chem 2016; 55:11538-11550. [DOI: 10.1021/acs.inorgchem.6b02080] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Nicole Kindermann
- Institut für Anorganische Chemie, Georg-August-Universität Göttingen, Tammannstraße 4, 37077 Göttingen, Germany
| | - Anne Schober
- Institut für Anorganische Chemie, Georg-August-Universität Göttingen, Tammannstraße 4, 37077 Göttingen, Germany
| | - Serhiy Demeshko
- Institut für Anorganische Chemie, Georg-August-Universität Göttingen, Tammannstraße 4, 37077 Göttingen, Germany
| | - Nicolai Lehnert
- Department of Chemistry, The University of Michigan, 930 N. University
Avenue, Ann Arbor, Michigan 48109-1055, United States
| | - Franc Meyer
- Institut für Anorganische Chemie, Georg-August-Universität Göttingen, Tammannstraße 4, 37077 Göttingen, Germany
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8
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Minier MA, Lippard SJ. (19)F NMR study of ligand dynamics in carboxylate-bridged diiron(II) complexes supported by a macrocyclic ligand. Dalton Trans 2015; 44:18111-21. [PMID: 26418547 PMCID: PMC4618381 DOI: 10.1039/c5dt02138c] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
A series of asymmetrically carboxylate-bridged diiron(ii) complexes featuring fluorine atoms as NMR spectroscopic probes, [Fe2(PIM)(Ar(4F-Ph)CO2)2] (10), [Fe2(F2PIM)(Ar(Tol)CO2)2] (11), and [Fe2(F2PIM)(Ar(4F-Ph)CO2)2] (12), were prepared and characterized by X-ray crystallography, Mössbauer spectroscopy, and VT (19)F NMR spectroscopy. These complexes are part of a rare family of syn N-donor diiron(ii) compounds, [Fe2(X2PIM)(RCO2)2], that are structurally very similar to the active site of the hydroxylase enzyme component of reduced methane monooxygenase (MMOHred). Solution characterization of these complexes demonstrates that they undergo intramolecular carboxylate rearrangements, or carboxylate shifts, a dynamic feature relevant to the reactivity of the diiron centers in bacterial multicomponent monooxygenases.
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Affiliation(s)
- Mikael A Minier
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
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9
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Dalle KE, Meyer F. Modelling Binuclear Metallobiosites: Insights from Pyrazole-Supported Biomimetic and Bioinspired Complexes. Eur J Inorg Chem 2015. [DOI: 10.1002/ejic.201500185] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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10
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Pal TK, De D, Neogi S, Bharadwaj PK. Guest dependent reversible single-crystal to single-crystal structural transformation in a flexible Gd(iii)-coordination polymer. Inorg Chem Front 2015. [DOI: 10.1039/c4qi00193a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We describe a 3D flexible Gd(iii)-coordination polymer, constructed from a linear carboxylate ligand, which shows reversible single-crystal to single-crystal “guest-responsive fitting” of the channels and carboxylate shift process, upon inclusion of aldehyde guests.
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Affiliation(s)
- Tapan K. Pal
- Department of Chemistry
- Indian Institute of Technology
- Kanpur 208016
- India
| | - Dinesh De
- Department of Chemistry
- Indian Institute of Technology
- Kanpur 208016
- India
| | - Subhadip Neogi
- Department of Chemistry
- Indian Institute of Technology
- Kanpur 208016
- India
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11
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Moelands MAH, Nijsse S, Folkertsma E, de Bruin B, Lutz M, Spek AL, Klein Gebbink RJM. Bioinspired Nonheme Iron Complexes Derived from an Extended Series of N,N,O-Ligated BAIP Ligands. Inorg Chem 2013; 52:7394-410. [DOI: 10.1021/ic400096e] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Marcel A. H. Moelands
- Organic Chemistry and Catalysis,
Debye Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, 3584 CG Utrecht,
The Netherlands
| | - Sjoerd Nijsse
- Organic Chemistry and Catalysis,
Debye Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, 3584 CG Utrecht,
The Netherlands
| | - Emma Folkertsma
- Organic Chemistry and Catalysis,
Debye Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, 3584 CG Utrecht,
The Netherlands
| | - Bas de Bruin
- Van’t
Hoff Institute
for Molecular Sciences (HIMS), University of Amsterdam, P.O. Box 94720, 1090 GE Amsterdam, The Netherlands
| | - Martin Lutz
- Van’t
Hoff Institute
for Molecular Sciences (HIMS), University of Amsterdam, P.O. Box 94720, 1090 GE Amsterdam, The Netherlands
- Bijvoet Center for Biomolecular
Research, Crystal and Structural Chemistry, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH Utrecht, The
Netherlands
| | - Anthony L. Spek
- Van’t
Hoff Institute
for Molecular Sciences (HIMS), University of Amsterdam, P.O. Box 94720, 1090 GE Amsterdam, The Netherlands
- Bijvoet Center for Biomolecular
Research, Crystal and Structural Chemistry, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH Utrecht, The
Netherlands
| | - Robertus J. M. Klein Gebbink
- Organic Chemistry and Catalysis,
Debye Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, 3584 CG Utrecht,
The Netherlands
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12
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Kumar U, Singh M, Thirupathi N. Mole ratio dependent formation of mononuclear versus pentanuclear zinc(II) pivalate complexes and the ‘carboxylate shift’ process. Polyhedron 2013. [DOI: 10.1016/j.poly.2013.02.081] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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13
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Blusch LK, Hemberger Y, Pröpper K, Dittrich B, Witterauf F, John M, Bringmann G, Brückner C, Meyer F. Siamese-Twin Porphyrin: A Pyrazole-Based Expanded Porphyrin of Persistent Helical Conformation. Chemistry 2013; 19:5868-80. [DOI: 10.1002/chem.201204296] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2012] [Indexed: 12/11/2022]
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14
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Wöckel S, Gałęzowska J, Dechert S, Meyer‐Klaucke W, Nordlander E, Meyer F. Zinc Complexes of a Bioinspired Binucleating Ligand Platform – Equilibria in Solution and Structures in the Solid State. Eur J Inorg Chem 2012. [DOI: 10.1002/ejic.201200269] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Simone Wöckel
- Institute of Inorganic Chemistry, Georg August University Göttingen, Tammannstrasse 4, 37077 Göttingen, Germany, Fax: +49‐551‐39‐3063, http://www.meyer.chemie.uni‐goettingen.de
| | - Joanna Gałęzowska
- Institute of Inorganic Chemistry, Georg August University Göttingen, Tammannstrasse 4, 37077 Göttingen, Germany, Fax: +49‐551‐39‐3063, http://www.meyer.chemie.uni‐goettingen.de
- New address: Department of Inorganic Chemistry, Faculty of Pharmacy, Wrocław Medical University, Szewska 38, 50‐139 Wrocław, Poland
| | - Sebastian Dechert
- Institute of Inorganic Chemistry, Georg August University Göttingen, Tammannstrasse 4, 37077 Göttingen, Germany, Fax: +49‐551‐39‐3063, http://www.meyer.chemie.uni‐goettingen.de
| | - Wolfram Meyer‐Klaucke
- Faculty of Science, Department of Chemistry, University of Paderborn, Warburger Str. 100, 33098 Paderborn, Germany
| | - Ebbe Nordlander
- Inorganic Chemistry Research Group, Chemical Physics, Center for Chemistry and Chemical Engineering, Lund University, Box 124, 22100 Lund, Sweden
| | - Franc Meyer
- Institute of Inorganic Chemistry, Georg August University Göttingen, Tammannstrasse 4, 37077 Göttingen, Germany, Fax: +49‐551‐39‐3063, http://www.meyer.chemie.uni‐goettingen.de
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Burger B, Demeshko S, Bill E, Dechert S, Meyer F. The Carboxylate Twist: Hysteretic Bistability of a High-Spin Diiron(II) Complex Identified by Mössbauer Spectroscopy. Angew Chem Int Ed Engl 2012; 51:10045-9. [DOI: 10.1002/anie.201202759] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2012] [Revised: 06/15/2012] [Indexed: 11/10/2022]
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16
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Burger B, Demeshko S, Bill E, Dechert S, Meyer F. Der Carboxylat-Twist - Aufklärung hysteretischer Bistabilität eines High-Spin-Dieisen(II)-Komplexes mithilfe von Mößbauer-Spektroskopie. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201202759] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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