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Wang D, Ma Y, Wolf B, Kokorin AI, Baumgarten M. Temperature-Dependent Intramolecular Spin Coupling Interactions of a Flexible Bridged Nitronyl Nitroxide Biradical in Solution. J Phys Chem A 2018; 122:574-581. [PMID: 29266949 DOI: 10.1021/acs.jpca.7b10559] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A biradical consisting of two nitronyl nitroxide (NN) radicals bridged by diphenyl-hexaethylene glycol chain [phenyl-O-(CH2CH2O)6-phenyl (GBN1)] was synthesized and investigated using electron paramagnetic resonance (EPR) spectroscopy in solution at different temperature ranges. The reversible temperature dependence behavior of spin coupling exchange is comprehensively reflected by the different lifetime of conformations due to a tumbling motion of the flexible hexaethylene glycol chain. The influences of different solvent on the exchange interactions between the radical entities are described by a two-conformational model, which was, for the first time, applied for di-NN molecule and revealed the thermodynamic parameters enthalpy and entropy (ΔH and ΔS) of the conformational changes. The positive value of enthalpy indicates lower energy of the stretched form (as calculated) compared to the bent form. The transition enthalpy in polar MeCN is larger than in toluene and the positive entropy sign indicates more chain conformation options in the bent state. The magnetic properties of this molecule were investigated in solid state by magnetization studies and EPR spectroscopy.
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Affiliation(s)
- Di Wang
- Max Planck Institute for Polymer Research , Ackermannweg 10, 55128 Mainz, Germany
| | - Yingjie Ma
- Max Planck Institute for Polymer Research , Ackermannweg 10, 55128 Mainz, Germany
| | - Bernd Wolf
- Physikalisches Institut, Goethe-University , 60438 Frankfurt, Germany
| | - Alexander I Kokorin
- N. Semenov Institute of Chemical Physics, Russian Academy of Sciences , Moscow, Russia
| | - Martin Baumgarten
- Max Planck Institute for Polymer Research , Ackermannweg 10, 55128 Mainz, Germany
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2
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Barone V, Cacelli I, Ferretti A. The role of the multiconfigurational character of nitronyl-nitroxide in the singlet–triplet energy gap of its diradicals. Phys Chem Chem Phys 2018; 20:18547-18555. [DOI: 10.1039/c8cp02165a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
CAS(2,2) reference may not be sufficient for the computation of singlet–triplet energy gap by DDCI.
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Affiliation(s)
| | - Ivo Cacelli
- Dipartimento di Chimica e Chimica Industriale
- Università di Pisa
- Pisa
- Italy
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR)
| | - Alessandro Ferretti
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR)
- Area della Ricerca
- I-56124 Pisa
- Italy
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3
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Gerolin M, Zerbetto M, Moretto A, Formaggio F, Toniolo C, van Son M, Shabestari MH, Huber M, Calligari P, Polimeno A. Integrated Computational Approach to the Electron Paramagnetic Resonance Characterization of Rigid 3 10-Helical Peptides with TOAC Nitroxide Spin Labels. J Phys Chem B 2017; 121:4379-4387. [PMID: 28422504 PMCID: PMC5628910 DOI: 10.1021/acs.jpcb.7b01050] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
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We address the interpretation, via
an integrated computational
approach, of the experimental continuous-wave electron paramagnetic
resonance (cw-EPR) spectra of a complete set of conformationally highly
restricted, stable 310-helical peptides from hexa- to nonamers,
each bis-labeled with nitroxide radical-containing TOAC (4-amino-1-oxyl-2,2,6,6-tetramethylpiperidine-4-carboxylic
acid) residues. The usefulness of TOAC for this type of analysis has
been shown already to be due to its cyclic piperidine side chain,
which is rigidly connected to the peptide backbone α-carbon.
The TOAC α-amino acids are separated by two, three, four, and
five intervening residues. This set of compounds has allowed us to
modulate both the radical···radical distance and the
relative orientation parameters. To further validate our conclusion,
a comparative analysis has been carried out on three singly TOAC-labeled
peptides of similar main-chain length.
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Affiliation(s)
- Marco Gerolin
- Department of Chemical Sciences, University of Padova , 35131 Padova, Italy.,Department of Chemistry, École Normale Supérieure, UPMC University of Paris 06, CNRS, Laboratory of Biomolecules , 75005 Paris, France
| | - Mirco Zerbetto
- Department of Chemical Sciences, University of Padova , 35131 Padova, Italy
| | - Alessandro Moretto
- Department of Chemical Sciences, University of Padova , 35131 Padova, Italy
| | - Fernando Formaggio
- Department of Chemical Sciences, University of Padova , 35131 Padova, Italy
| | - Claudio Toniolo
- Department of Chemical Sciences, University of Padova , 35131 Padova, Italy
| | - Martin van Son
- Huygens-Kamerlingh Onnes Laboratory, Leiden University , 2300RA Leiden, The Netherlands
| | | | - Martina Huber
- Huygens-Kamerlingh Onnes Laboratory, Leiden University , 2300RA Leiden, The Netherlands
| | - Paolo Calligari
- Department of Chemical Sciences, University of Padova , 35131 Padova, Italy
| | - Antonino Polimeno
- Department of Chemical Sciences, University of Padova , 35131 Padova, Italy
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4
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Barone V, Cacelli I, Ferretti A, Prampolini G. Magnetic gaps in organic tri-radicals: From a simple model to accurate estimates. J Chem Phys 2017; 146:104103. [DOI: 10.1063/1.4977598] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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5
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Ionita G, Madalan AM, Ariciu AM, Medvedovici A, Ionita P. Synthesis of novel TEMPO stable free (poly)radical derivatives and their host–guest interaction with cucurbit[6]uril. NEW J CHEM 2016. [DOI: 10.1039/c5nj01518a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The line shape analysis of the ESR spectra of TEMPO derivatives in the absence and in the presence of cucurbit[6]uril provides information on host–guest complexes.
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Affiliation(s)
- Gabriela Ionita
- “Ilie Murgulescu” Institute of Physical Chemistry of the Romanian Academy
- Bucharest
- Romania
| | - Augustin M. Madalan
- Inorganic Chemistry Department
- Faculty of Chemistry
- University of Bucharest
- 020464-Bucharest
- Romania
| | - Ana Maria Ariciu
- “Ilie Murgulescu” Institute of Physical Chemistry of the Romanian Academy
- Bucharest
- Romania
- Department of Organic Chemistry
- Biochemistry and Catalysis
| | - Andrei Medvedovici
- Department of Analytical Chemistry
- University of Bucharest
- Bucharest
- Romania
| | - Petre Ionita
- “Ilie Murgulescu” Institute of Physical Chemistry of the Romanian Academy
- Bucharest
- Romania
- Department of Organic Chemistry
- Biochemistry and Catalysis
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6
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Caneschi A, Gatteschi D, Totti F. Molecular magnets and surfaces: A promising marriage. A DFT insight. Coord Chem Rev 2015. [DOI: 10.1016/j.ccr.2014.11.016] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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7
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Coulaud E, Malrieu JP, Guihéry N, Ferré N. Additive Decomposition of the Physical Components of the Magnetic Coupling from Broken Symmetry Density Functional Theory Calculations. J Chem Theory Comput 2013; 9:3429-36. [DOI: 10.1021/ct400305h] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Esther Coulaud
- Aix-Marseille Université,
CNRS, Institut de Chimie Radicalaire, 13397,
Marseille Cedex 20, France
| | - Jean-Paul Malrieu
- Laboratoire de Chimie et Physique
Quantiques, UMR 5626 of CNRS, Université de Toulouse III, 118 route de Narbonne, 31062 Toulouse, France
| | - Nathalie Guihéry
- Laboratoire de Chimie et Physique
Quantiques, UMR 5626 of CNRS, Université de Toulouse III, 118 route de Narbonne, 31062 Toulouse, France
| | - Nicolas Ferré
- Aix-Marseille Université,
CNRS, Institut de Chimie Radicalaire, 13397,
Marseille Cedex 20, France
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Domingo A, Vérot M, Mota F, de Graaf C, Novoa JJ, Robert V. Impact of short and long-range effects on the magnetic interactions in neutral organic radical-based materials. Phys Chem Chem Phys 2013; 15:6982-9. [DOI: 10.1039/c3cp44647f] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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