1
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Marques HM. The inorganic chemistry of the cobalt corrinoids - an update. J Inorg Biochem 2023; 242:112154. [PMID: 36871417 DOI: 10.1016/j.jinorgbio.2023.112154] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Revised: 01/23/2023] [Accepted: 01/26/2023] [Indexed: 02/05/2023]
Abstract
The inorganic chemistry of the cobalt corrinoids, derivatives of vitamin B12, is reviewed, with particular emphasis on equilibrium constants for, and kinetics of, their axial ligand substitution reactions. The role the corrin ligand plays in controlling and modifying the properties of the metal ion is emphasised. Other aspects of the chemistry of these compounds, including their structure, corrinoid complexes with metals other than cobalt, the redox chemistry of the cobalt corrinoids and their chemical redox reactions, and their photochemistry are discussed. Their role as catalysts in non-biological reactions and aspects of their organometallic chemistry are briefly mentioned. Particular mention is made of the role that computational methods - and especially DFT calculations - have played in developing our understanding of the inorganic chemistry of these compounds. A brief overview of the biological chemistry of the B12-dependent enzymes is also given for the reader's convenience.
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Affiliation(s)
- Helder M Marques
- Molecular Sciences Institute, School of Chemistry, University of the Witwatersrand, Johannesburg 2050, South Africa.
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2
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Alzubidi AE, Bond AM, Martin LL. Oxidation of Thiosulphate using TCNQF
n
(n=0, 2, 4) Derivatives with a Tuneable Driving Force: Electrochemical and Spectrophotometric Detection of a Protonated Intermediate. ChemElectroChem 2022. [DOI: 10.1002/celc.202200538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
| | - Alan M. Bond
- School of Chemistry Monash University Clayton 3800 Victoria Australia
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3
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Osokin VS, Dereven’kov IA, Makarov SV, Gaina-Gardiuta A, Silaghi-Dumitrescu R. Effect of trans-ligand on properties of nitric oxide motif in nitrosylcobinamide. J COORD CHEM 2022. [DOI: 10.1080/00958972.2022.2079409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Vladimir S. Osokin
- Department of Food Chemistry, Ivanovo State University of Chemistry and Technology, Ivanovo, Russia
| | - Ilia A. Dereven’kov
- Department of Food Chemistry, Ivanovo State University of Chemistry and Technology, Ivanovo, Russia
| | - Sergei V. Makarov
- Department of Food Chemistry, Ivanovo State University of Chemistry and Technology, Ivanovo, Russia
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4
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Berthomieu R, Pérez-Bernal MF, Santa-Catalina G, Desmond-Le Quéméner E, Bernet N, Trably E. Mechanisms underlying Clostridium pasteurianum's metabolic shift when grown with Geobacter sulfurreducens. Appl Microbiol Biotechnol 2021; 106:865-876. [PMID: 34939136 DOI: 10.1007/s00253-021-11736-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Revised: 12/08/2021] [Accepted: 12/11/2021] [Indexed: 10/19/2022]
Abstract
Recently, a study showed that glycerol fermentation by Clostridium pasteurianum could be metabolically redirected when the electroactive bacterium Geobacter sulfurreducens was added in the culture. It was assumed that this metabolic shift of the fermentative species resulted from an interspecies electron transfer. The aim of this study was to find out the mechanisms used for this interaction and how they affect the metabolism of C. pasteurianum. To get insights into the mechanisms involved, several coculture setups and RNA sequencing with differential expression analysis were performed. As a result, a putative interaction model was proposed: G. sulfurreducens produces cobamide molecules that possibly modify C. pasteurianum metabolic pathway at the key enzyme glycerol dehydratase, and affect its vanadium nitrogenase expression. In addition, the results suggested that G. sulfurreducens' electrons could enter C. pasteurianum through its transmembrane flavin-bound polyferredoxin and cellular cytochrome b5-rubredoxin interplay, putatively reinforcing the metabolic shift. Unravelling the mechanisms behind the interaction between fermentative and electroactive bacteria helps to better understand the role of bacterial interactions in fermentation setups. KEY POINTS: • C. pasteurianum-G. sulfurreducens interaction inducing a metabolic shift is mediated • C. pasteurianum's metabolic shift in coculture might be induced by cobamides • Electrons possibly enter C. pasteurianum through a multiflavin polyferredoxin.
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Affiliation(s)
| | | | | | | | | | - Eric Trably
- INRAE, Univ Montpellier, LBE, Narbonne, France.
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5
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Okamoto N, Bito T, Hiura N, Yamamoto A, Iida M, Baba Y, Fujita T, Ishihara A, Yabuta Y, Watanabe F. Food Additives (Hypochlorous Acid Water, Sodium Metabisulfite, and Sodium Sulfite) Strongly Affect the Chemical and Biological Properties of Vitamin B 12 in Aqueous Solution. ACS OMEGA 2020; 5:6207-6214. [PMID: 32226906 PMCID: PMC7097994 DOI: 10.1021/acsomega.0c00425] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Accepted: 02/27/2020] [Indexed: 06/10/2023]
Abstract
Food additives, such as hypochlorous acid water, sodium metabisulfite, and sodium sulfite, strongly affect the chemical and biological properties of vitamin B12 (cyanocobalamin) in aqueous solution. When cyanocobalamin (10 μmol/L) was treated with these compounds, hypochlorous acid water (an effective chlorine concentration of 30 ppm) rapidly reacted with cyanocobalamin. The maximum absorptions at 361 and 550 nm completely disappeared by 1 h, and vitamin B12 activity was lost. There were no significant changes observed in the absorption spectra of cyanocobalamin for 0.01% (w/v) sodium metabisulfite; however, a small amount of the reaction product was formed within 48 h, which was subsequently identified as sulfitocobalamin through high-performance liquid chromatography. Similar results were shown for sodium sulfite. The effects of these food additives on the vitamin B12 content of red shrimp and beef meats were determined, revealing no significant difference in vitamin B12 content of shrimp and beef meats with or without the treatment even in hypochlorous acid water. The results suggest that these food additives could not react with food vitamin B12 in food, as most of this vitamin present in food is its protein-bound form rather than the free form.
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Affiliation(s)
- Naho Okamoto
- The
United Graduate School of Agricultural Sciences, Tottori University, 4-101 Koyama-Minami, Tottori City, Tottori 680-8553, Japan
| | - Tomohiro Bito
- The
United Graduate School of Agricultural Sciences, Tottori University, 4-101 Koyama-Minami, Tottori City, Tottori 680-8553, Japan
- Faculty
of Agriculture, School of Agricultural, Biological, and Environmental
Sciences, Tottori University, Tottori 680-8553, Japan
| | - Nanami Hiura
- Faculty
of Agriculture, School of Agricultural, Biological, and Environmental
Sciences, Tottori University, Tottori 680-8553, Japan
| | - Ayaka Yamamoto
- Faculty
of Agriculture, School of Agricultural, Biological, and Environmental
Sciences, Tottori University, Tottori 680-8553, Japan
| | - Mayu Iida
- Faculty
of Agriculture, School of Agricultural, Biological, and Environmental
Sciences, Tottori University, Tottori 680-8553, Japan
| | - Yasuhiro Baba
- Faculty
of Agriculture, School of Agricultural, Biological, and Environmental
Sciences, Tottori University, Tottori 680-8553, Japan
| | - Tomoyuki Fujita
- Faculty
of Agriculture, Department of Agricultural and Life Sciences, Shinshu University, Nagano 399-4598, Japan
| | - Atsushi Ishihara
- The
United Graduate School of Agricultural Sciences, Tottori University, 4-101 Koyama-Minami, Tottori City, Tottori 680-8553, Japan
- Faculty
of Agriculture, School of Agricultural, Biological, and Environmental
Sciences, Tottori University, Tottori 680-8553, Japan
| | - Yukinori Yabuta
- The
United Graduate School of Agricultural Sciences, Tottori University, 4-101 Koyama-Minami, Tottori City, Tottori 680-8553, Japan
- Faculty
of Agriculture, School of Agricultural, Biological, and Environmental
Sciences, Tottori University, Tottori 680-8553, Japan
| | - Fumio Watanabe
- The
United Graduate School of Agricultural Sciences, Tottori University, 4-101 Koyama-Minami, Tottori City, Tottori 680-8553, Japan
- Faculty
of Agriculture, School of Agricultural, Biological, and Environmental
Sciences, Tottori University, Tottori 680-8553, Japan
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6
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Dereven'kov IA, Hannibal L, Makarov SV, Molodtsov PA. Catalytic effect of riboflavin on electron transfer from NADH to aquacobalamin. J Biol Inorg Chem 2019; 25:125-133. [PMID: 31773269 DOI: 10.1007/s00775-019-01745-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Accepted: 11/21/2019] [Indexed: 11/26/2022]
Abstract
Reduction of cobalamin by non-dedicated cellular reductases has been reported in earlier work, however, the sources of reducing power and the mechanisms are unknown. This study reports results of kinetic and mechanistic investigation of the reaction between aquacobalamin, H2OCbl, and reduced β-nicotinamide adenine dinucleotide, NADH. This interaction leads to the formation of one-electron reduced cobalamin, cob(II)alamin, and proceeds via water substitution on aquacobalamin by NADH and further decomposition of NADH-Co(III) complex to cob(II)alamin and NADH·+. Riboflavin catalyzes the reduction of aquacobalamin by NADH both in free form and with aquacobalamin bound to the cobalamin processing enzyme CblC. The rate-determining step of this catalytic reaction is the interaction between riboflavin and NADH to produce a charge transfer complex that reacts with aquacobalamin. Aquacobalamin quenches the fluorescence of NADH and riboflavin predominantly via a static mechanism.
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Affiliation(s)
- Ilia A Dereven'kov
- Department of Food Chemistry, Ivanovo State University of Chemistry and Technology, Sheremetevskiy Str. 7, 153000, Ivanovo, Russian Federation.
| | - Luciana Hannibal
- Laboratory of Clinical Biochemistry and Metabolism, Department of General Pediatrics, Adolescent Medicine and Neonatology, Faculty of Medicine, Medical Center, University of Freiburg, 79106, Freiburg, Germany
| | - Sergei V Makarov
- Department of Food Chemistry, Ivanovo State University of Chemistry and Technology, Sheremetevskiy Str. 7, 153000, Ivanovo, Russian Federation
| | - Pavel A Molodtsov
- Department of Food Chemistry, Ivanovo State University of Chemistry and Technology, Sheremetevskiy Str. 7, 153000, Ivanovo, Russian Federation
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7
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Reactivity of Small Oxoacids of Sulfur. Molecules 2019; 24:molecules24152768. [PMID: 31366103 PMCID: PMC6696132 DOI: 10.3390/molecules24152768] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 07/22/2019] [Accepted: 07/24/2019] [Indexed: 01/01/2023] Open
Abstract
Oxidation of sulfide to sulfate is known to consist of several steps. Key intermediates in this process are the so-called small oxoacids of sulfur (SOS)—sulfenic HSOH (hydrogen thioperoxide, oxadisulfane, or sulfur hydride hydroxide) and sulfoxylic S(OH)2 acids. Sulfur monoxide can be considered as a dehydrated form of sulfoxylic acid. Although all of these species play an important role in atmospheric chemistry and in organic synthesis, and are also invoked in biochemical processes, they are quite unstable compounds so much so that their physical and chemical properties are still subject to intense studies. It is well-established that sulfoxylic acid has very strong reducing properties, while sulfenic acid is capable of both oxidizing and reducing various substrates. Here, in this review, the mechanisms of sulfide oxidation as well as data on the structure and reactivity of small sulfur-containing oxoacids, sulfur monoxide, and its precursors are discussed.
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Dereven’kov IA, Makarov SV. Mechanistic studies on the reaction between glutathionylcobalamin and selenocysteine. J COORD CHEM 2019. [DOI: 10.1080/00958972.2019.1570166] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Ilia A. Dereven’kov
- Institute of Macroheterocyclic Compounds, Ivanovo State University of Chemistry and Technology, Ivanovo, Russian Federation
| | - Sergei V. Makarov
- Institute of Macroheterocyclic Compounds, Ivanovo State University of Chemistry and Technology, Ivanovo, Russian Federation
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Dereven’kov IA, Salnikov DS, Makarov SV. Interaction between super-reduced cobalamin and selenite. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2017. [DOI: 10.1134/s003602441711005x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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10
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Dereven'kov IA, Polyakova AY, Makarov SV. Kinetic and Mechanistic Studies on the Reaction between Aquacobalamin and Selenocysteine. Eur J Inorg Chem 2017. [DOI: 10.1002/ejic.201700973] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Ilia A. Dereven'kov
- Department of Food Chemistry; Ivanovo State University of Chemistry and Technology; Sheremetevskiy str. 7 153000 Ivanovo Russia
| | - Anastasiya Yu. Polyakova
- Department of Food Chemistry; Ivanovo State University of Chemistry and Technology; Sheremetevskiy str. 7 153000 Ivanovo Russia
| | - Sergei V. Makarov
- Department of Food Chemistry; Ivanovo State University of Chemistry and Technology; Sheremetevskiy str. 7 153000 Ivanovo Russia
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11
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Dereven'kov IA, Ivlev PA, Bischin C, Salnikov DS, Silaghi-Dumitrescu R, Makarov SV, Koifman OI. Comparative studies of reaction of cobalamin (II) and cobinamide (II) with sulfur dioxide. J Biol Inorg Chem 2017; 22:969-975. [PMID: 28620693 DOI: 10.1007/s00775-017-1474-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2017] [Accepted: 06/07/2017] [Indexed: 12/20/2022]
Abstract
The kinetics of reactions of cobalamin (II) and cobinamide (II) with sulfur dioxide was studied by UV-visible (UV-vis) spectroscopy. Reaction results in oxidation of Co(II) center and involves two aquated SO2 moieties. The final product is suggested to be complex Co(III)-S2O 4•- . The absence of corrin ring modifications during the reactions was proved.
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Affiliation(s)
- Ilia A Dereven'kov
- Institute of Macroheterocyclic Compounds, Ivanovo State University of Chemistry and Technology, Sheremetevskiy str. 7, 153000, Ivanovo, Russia
| | - Pavel A Ivlev
- Institute of Macroheterocyclic Compounds, Ivanovo State University of Chemistry and Technology, Sheremetevskiy str. 7, 153000, Ivanovo, Russia
| | - Cristina Bischin
- Department of Chemistry and Chemical Engineering, "Babes-Bolyai" University, Str. Arany Janos Nr. 11, 400028, Cluj-Napoca, Romania
| | - Denis S Salnikov
- Institute of Macroheterocyclic Compounds, Ivanovo State University of Chemistry and Technology, Sheremetevskiy str. 7, 153000, Ivanovo, Russia.
| | - Radu Silaghi-Dumitrescu
- Department of Chemistry and Chemical Engineering, "Babes-Bolyai" University, Str. Arany Janos Nr. 11, 400028, Cluj-Napoca, Romania
| | - Sergei V Makarov
- Institute of Macroheterocyclic Compounds, Ivanovo State University of Chemistry and Technology, Sheremetevskiy str. 7, 153000, Ivanovo, Russia
| | - Oscar I Koifman
- Institute of Macroheterocyclic Compounds, Ivanovo State University of Chemistry and Technology, Sheremetevskiy str. 7, 153000, Ivanovo, Russia
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12
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Dereven'kov IA, Hannibal L, Dürr M, Salnikov DS, Bui Thi TT, Makarov SV, Koifman OI, Ivanović-Burmazović I. Redox turnover of organometallic B 12 cofactors recycles vitamin C: Sulfur assisted reduction of dehydroascorbic acid by cob(II)alamin. J Organomet Chem 2017. [DOI: 10.1016/j.jorganchem.2017.01.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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13
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Bui TTT, Sal’nikov DS, Dereven’kov IA, Makarov SV. Kinetics of reactions of aquacobalamin with aspartic and glutamic acids and their amides in water solutions. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2017. [DOI: 10.1134/s0036024417040021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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14
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Shimakoshi H, Hisaeda Y. A Hybrid Catalyst for Light-Driven Green Molecular Transformations. Chempluschem 2016; 82:18-29. [DOI: 10.1002/cplu.201600303] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2016] [Revised: 07/26/2016] [Indexed: 01/03/2023]
Affiliation(s)
- Hisashi Shimakoshi
- Department of Chemistry and Biochemistry; Graduate School of Engineering; Kyushu University; 744 Motooka, Nishi-ku Fukuoka 819-0395 Japan
| | - Yoshio Hisaeda
- Department of Chemistry and Biochemistry; Graduate School of Engineering; Kyushu University; 744 Motooka, Nishi-ku Fukuoka 819-0395 Japan
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16
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Shimakoshi H, Hisaeda Y. B12-TiO2Hybrid Catalyst for Light-Driven Hydrogen Production and Hydrogenation of CC Multiple Bonds. Chempluschem 2014. [DOI: 10.1002/cplu.201402081] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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17
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Salnikov DS, Kucherenko PN, Dereven'kov IA, Makarov SV, van Eldik R. Kinetics and Mechanism of the Reaction of Hydrogen Sulfide with Cobalamin in Aqueous Solution. Eur J Inorg Chem 2014. [DOI: 10.1002/ejic.201301340] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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