Ion Mobility Separation Using a Dual-LIT Miniature Mass Spectrometer

Ion mobility (IM) has been increasingly used in combination with mass spectrometry (MS) for chemical and biological analysis. While implementation of IM with MS usually requires complex instrumentation with delicate controls, in this study we explored the potential of performing IM separation using dual-linear ion traps (LITs) in a miniature mass spectrometer, which was originally developed for performing comprehensive MS/MS scan functions with a simple instrumentation configuration. The IM separation was achieved by ion transfer between the LITs with dynamic gas flow. Its performance was characterized for analysis of a broad range of chemical and biological compounds including small organic compounds such as trisaccharides, raffinose, cellotriose, and melezitose, as well as protein conformers. The demonstrated technique serves as another example of developing powerful hybrid instrument functions with simple configurations and miniaturized sizes.

Stimulated Motion Suppression (STMS): a New Approach to Break the Resolution Barrier for Ion Trap Mass Spectrometry

Ion trap is an excellent platform to perform tandem mass spectrometry (MS/MS), but has an intrinsic drawback in resolving power. Using ion resonant ejection as an example, the resolution degradation can be largely attributed to the broadening of the resonant frequency band (RFB) between ion motion and driving alternative-current (AC). To solve this problem, stimulated motion suppression (STMS) was developed. The key idea of STMS is the use of two suppression alternative-current (SAC) signals, which both have reversed initial phases to the main AC. The SACs can block the unexpected sideband ion resonances (or ejections), therefore playing a key role in sharpening the RFB. The proof-of-concept has been demonstrated through ion trajectory simulations and validated experimentally. STMS provides a new and versatile means for the improvement of the ion trap resolution, which for a long time has reached the bottleneck through conventional methods, e.g., increasing the radio-frequency (RF) voltage and decreasing the mass scan rate. At the end, it is worth noting that the idea of STMS is very general and principally can be applied in any RF device for the purposes of high-resolution mass analysis and ion isolation. Graphical Abstract ᅟ.

Determination of Collision Cross Sections Using a Fourier Transform Electrostatic Linear Ion Trap Mass Spectrometer

Collision cross sections (CCSs) were determined from the frequency-domain linewidths in a Fourier transform electrostatic linear ion trap. With use of an ultrahigh-vacuum precision leak valve and nitrogen gas, transients were recorded as the background pressure in the mass analyzer chamber was varied between 4× 10^-8 and 7 × 10^-7 Torr. The energetic hard-sphere ion-neutral collision model, described by Xu and coworkers, was used to relate the recorded image charge to the CCS of the molecule. In lieu of our monoisotopically isolating the mass of interest, the known relative isotopic abundances were programmed into the Lorentzian fitting algorithm such that the linewidth was extracted from a sum of Lorentzians. Although this works only if the isotopic distribution is known a priori, it prevents ion loss, preserves the high signal-to-noise ratio, and minimizes the experimental error on our homebuilt instrument. Six tetraalkylammonium cations were used to correlate the CCS measured in the electrostatic linear ion trap with that measured by drift-tube ion mobility spectrometry, for which there was an excellent correlation (R ² ≈ 0.9999). Although the absolute CCSs derived with our method differ from those reported, the extracted linear correlation can be used to correct the raw CCS. With use of [angiotensin II]²⁺ and reserpine, the corrected CCSs (334.9 ± 2.1 and 250.1 ± 0.5, respectively) were in good agreement with the reported ion mobility spectrometry CCSs (335 and 254.3, respectively). With sufficient signal-to-noise ratio, the CCSs determined are reproducible to within a fraction of a percent, comparable to the uncertainties reported on dedicated ion mobility instruments. Graphical Abstract ᅟ.

Ion collision cross section analyses in quadrupole ion traps using the filter diagonalization method: a theoretical study

Previously, we have demonstrated the feasibility of measuring ion collision cross sections (CCSs) within a quadrupole ion trap by performing time-frequency analyses of simulated ion trajectories. In this study, an improved time-frequency analysis method, the filter diagonalization method (FDM), was applied for data analyses. Using the FDM, high resolution could be achieved in both time- and frequency-domains when calculating ion time-frequency curves. Owing to this high-resolution nature, ion-neutral collision induced ion motion frequency shifts were observed, which further cause the intermodulation of ion trajectories and thus accelerate image current attenuation. Therefore, ion trap operation parameters, such as the ion number, high-order field percentage and buffer gas pressure, were optimized for ion CCS measurements. Under optimized conditions, simulation results show that a resolving power from 30 to more than 200 could be achieved for ion CCS measurements.

Extracting biomolecule collision cross sections from the high-resolution FT-ICR mass spectral linewidths

It is known that the ion collision cross section (CCS) may be calculated from the linewidth of a Fourier transform ion cyclotron resonance (FT-ICR) mass spectral peak at elevated pressure (e.g., ∼10(-6) Torr). However, the high mass resolution of FT-ICR is sacrificed in those experiments due to high buffer gas pressure. In this study, we describe a linewidth correction method to eliminate the windowing-induced peak broadening effect. Together with the energetic ion-neutral collision model previously developed by our group, this method enables the extraction of CCSs of biomolecules from high-resolution FT-ICR mass spectral linewidths, obtained at a typical operating buffer gas pressure of modern FT-ICR instruments (∼10(-10) Torr). CCS values of peptides including MRFA, angiotensin I, and bradykinin measured by the proposed method agree well with ion mobility measurements, and the unfolding of protein ions (ubiquitin) at higher charge states is also observed.

Ion transfer between ion source and mass spectrometer inlet: electro-hydrodynamic simulation and experimental validation

RATIONALE

The ion transfer from the atmospheric pressure ion source to mass spectrometer inlet is directly related to the sensitivity of the mass spectrometry (MS) analysis. Electric field and dynamic gas flow are typically used to facilitate the ionization process and ion transfer. While sophisticated methods have been developed for ion trajectory simulation with a pure electric field, the influence of the dynamic gas flow could not be easily incorporated for the study.

METHODS

A nanoESI (electrospray ionization) source was set off-axis in front of an MS inlet to study the ion transfer under the influence of both electric field and gas flows. Electro-hydrodynamic simulation (EHS) was performed to predict the ion transfer, which was subsequently validated with the experimental characterization.

RESULTS

The EHS results based on the gas dynamics were found to match well with the experimental results and therefore can be used to guide the instrumentation design. The relative intensities of different ion species could be modified by adjusting the gas flow rate, and a differential transfer of the selected ion species was achieved.

CONCLUSIONS

EHS is a powerful tool for the design of ion optics operating at atmospheric pressure. As a rapid and convenient method, proper combination of an air dynamic field and an electric field enabled a gas-phase ion separation in the source region without using sophisticated ion mobility devices. Copyright © 2016 John Wiley & Sons, Ltd.

Ion collision cross section measurements in Fourier transform-based mass analyzers

High-vacuum ion collision cross section (CCS) measurements in Fourier transform mass analyzers.

Collision cross section measurements for biomolecules within a high-resolution Fourier transform ion cyclotron resonance cell

To understand the role and function of a biomolecule in a biosystem, it is important to know both its composition and structure. Here, a mass spectrometric based approach has been proposed and applied to demonstrate that collision cross sections and high-resolution mass spectra of biomolecule ions may be obtained simultaneously by Fourier transform ion cyclotron resonance mass spectrometry. With this method, the unfolding phenomena for ubiquitin ions that possess different number of charges have been investigated, and results agree well with ion mobility measurements. In the present approach, we extend ion collision cross-section measurements to lower pressures than in prior ion cyclotron resonance (ICR)-based experiments, thereby maintaining the potentially high resolution of Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS), and enabling collision cross section (CCS) measurements for high-mass biomolecules.

Collision cross section measurements for biomolecules within a high-resolution FT-ICR cell: theory

An energetic hard-sphere collision model for modern high-resolution FT-ICR.

Realistic modeling of ion-neutral collisions in quadrupole ion traps

In this study, three ion-neutral collision models have been discussed and compared, including the Langevin, the hard-sphere and the mixed collision models. With the pseudo-potential approximation, analytical expressions of ion secular motions with the hard-sphere and mixed collision models have been obtained for the first time. Through numerical simulations and theoretical calculations, it is found that the mixed collision model could be used as a general description of ion-neutral collisions under different conditions. Langevin collision model is a good description of low energy collisions between small ions and neutrals, while hard-sphere collision model could be used to describe high energy collisions and/or ions with higher masses (larger physical sizes). These analytical expressions of ion motion decay profiles enable the creation of direct relationships between time-domain image currents with ion collision cross sections.