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Zakharychev DV, Gerasimova DP, Fayzullin RR. ENERGY ASPECTS OF CHIRAL DISCRIMINATION IN A CONTINUOUS SOLID SOLUTION OF ENANTIOMERS: p-PROPOXYPHENYL GLYCEROL ETHER. J STRUCT CHEM+ 2023. [DOI: 10.1134/s0022476623020063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/11/2023]
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2
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Gerasimova DP, Faizova RG, Zakharychev DV, Saifina AF, Kurbangalieva AR, Lodochnikova OA. STABILITY AND REPRODUCIBILITY OF THE DIMERIC MOTIF IN THE CRYSTALS OF THIOETHERS OF 3-BROMO-5-HYDROXY-1- (4-METHYLBENZYL)-1,5-DIHYDRO-2H-PYRROL-2-ONES. J STRUCT CHEM+ 2022. [DOI: 10.1134/s0022476622100080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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3
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Gerasimova DP, Saigitbatalova ES, Islamov DR, Zakharychev DV, Saifina AF, Kurbangalieva AR, Lodochnikova OA. REPRODUCIBILITY OF A HOMOCHIRAL HYDROGEN-BONDED CHAIN IN CONGLOMERATE AND RACEMIC COMPOUND CRYSTALS OF THE TRIAZOLE DERIVATIVE OF 3-PYRROLINE-2-ONE. J STRUCT CHEM+ 2022. [DOI: 10.1134/s0022476622090062] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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4
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Rahelivao MP, Bauer I, Lübken T, Kataeva O, Vehlow A, Cordes N, Knölker HJ. First Synthesis, Confirmation of Stereochemistry, and Cytotoxic Activity of Oxyfungiformin. European J Org Chem 2022. [DOI: 10.1002/ejoc.202200809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
| | - Ingmar Bauer
- TU Dresden: Technische Universitat Dresden Chemistry GERMANY
| | - Tilo Lübken
- TU Dresden: Technische Universitat Dresden Chemistry GERMANY
| | - Olga Kataeva
- TU Dresden: Technische Universitat Dresden Chemistry GERMANY
| | - Anne Vehlow
- TU Dresden Faculty of Medicine Carl Gustav Carus: Technische Universitat Dresden Medizinische Fakultat Carl Gustav Carus Medicine GERMANY
| | - Nils Cordes
- TU Dresden Faculty of Medicine Carl Gustav Carus: Technische Universitat Dresden Medizinische Fakultat Carl Gustav Carus Radiotherapy and Radiation Oncology GERMANY
| | - Hans-Joachim Knölker
- Technische Universität Dresden Institut für Organische Chemie Bergstr. 66 1069 Dresden GERMANY
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Castañeda R, Lindeman SV, Krivoshein AV, Metta-Magaña AJ, Chen Y, Timofeeva TV. Remarkable similarity of molecular packing in crystals of racemic and enantiopure 2-phenylpropionamide: Z' = 4 structures, molecular disorder, and the formation of a partial solid solution. CRYSTAL GROWTH & DESIGN 2022; 22:4592-4600. [PMID: 38707789 PMCID: PMC11068035 DOI: 10.1021/acs.cgd.2c00509] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2024]
Abstract
Substituted acetamides (many of which are chiral) are known to be pharmacologically active. 2-Phenylpropionamide (2PPA) is one of the simplest chiral α-substituted acetamides and thus is of interest as a model compound in the growth and design of pharmaceutical crystals. In this study, the crystal structures of racemic and enantiopure forms of 2PPA were determined for the first time using single crystal X-ray diffraction at 100 K. The relationship between the signs of optical rotation and the absolute configurations is (+)-(S)-2PPA and (-)-(R)-2PPA. Four symmetrically independent molecules with different conformations are observed in crystals of both racemic and enantiopure forms. Remarkably, all forms adopt very similar supramolecular structures, H-bonded corrugated layers, that can be described using a R 2 2 ( 8 ) R 6 4 ( 16 ) graph set. The outer surfaces of these layers are built of nonpolar phenyl groups, and their inner structures are composed of H-bonded amide groups. The presence of these layers determines the thin plate shape of 2PPA crystals. Spectroscopically, the racemic and enantiopure forms substantially differ only in the low-frequency Raman region. X-ray diffraction data suggest that the racemic form of 2PPA is a partial solid solution made possible by statistical occupancy of molecular positions by (R)- and (S)-enantiomers.
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Affiliation(s)
- Raúl Castañeda
- Department of Chemistry, New Mexico Highlands University, Las Vegas, New Mexico 87701, USA
| | - Sergei V. Lindeman
- Department of Chemistry, Marquette University, Milwaukee, Wisconsin 53233, USA
| | - Arcadius V. Krivoshein
- Department of Chemistry, New Mexico Highlands University, Las Vegas, New Mexico 87701, USA
| | - Alejandro J. Metta-Magaña
- Department of Chemistry and Biochemistry, The University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Yongli Chen
- Department of Natural Science, Hawaii Pacific University, Honolulu, Hawaii 96813, USA
| | - Tatiana V. Timofeeva
- Department of Chemistry, New Mexico Highlands University, Las Vegas, New Mexico 87701, USA
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6
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Samigullina AI, Fayzullin RR, Voronina JK, Murtazina AM, Mamedov VA, Gubaidullin AT. Polymorphism in a benzo[b][1,4]diazepine derivative: Crystal structure, phase behavior and selective influence of solvents. MENDELEEV COMMUNICATIONS 2022. [DOI: 10.1016/j.mencom.2022.03.041] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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7
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Gerasimova DP, Saifina AF, Zakharychev DV, Zaripova AR, Fayzullin RR, Kurbangalieva AR, Lodochnikova OA. CHIRALITY-DEPENDENT HYDROGEN BONDING AND ENERGY OF 1-BENZYL-3-BROMO-5-HYDROXY- 4-[(4-METHYLPHENYL)SULFANYL]-1,5-DIHYDRO- 2Н-PYRROLE-2-ONE DIASTEREOMORPHS. J STRUCT CHEM+ 2021. [DOI: 10.1134/s0022476621050097] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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8
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Shteingolts SA, Saifina AF, Saifina LF, Semenov VE, Fukin GK, Fayzullin RR. X-ray charge density study of the 6-methyluracil derivative in the crystal: Revealing, consequences, and multipole refinement of minor static disorder. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129724] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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9
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Gerasimova DP, Saifina AF, Zakharychev DV, Fayzullin RR, Kurbangalieva AR, Lodochnikova OA. The second example of doubly enantiophobic behavior during crystallization: a detailed crystallographic, thermochemical and spectroscopic study. CrystEngComm 2021. [DOI: 10.1039/d1ce00227a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The formation of two racemic conglomerates with different crystal structures was found.
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Affiliation(s)
- Daria P. Gerasimova
- Arbuzov Institute of Organic and Physical Chemistry
- FRC Kazan Scientific Center
- Russian Academy of Sciences
- Kazan 420088
- Russian Federation
| | - Alina F. Saifina
- Arbuzov Institute of Organic and Physical Chemistry
- FRC Kazan Scientific Center
- Russian Academy of Sciences
- Kazan 420088
- Russian Federation
| | - Dmitry V. Zakharychev
- Arbuzov Institute of Organic and Physical Chemistry
- FRC Kazan Scientific Center
- Russian Academy of Sciences
- Kazan 420088
- Russian Federation
| | - Robert R. Fayzullin
- Arbuzov Institute of Organic and Physical Chemistry
- FRC Kazan Scientific Center
- Russian Academy of Sciences
- Kazan 420088
- Russian Federation
| | - Almira R. Kurbangalieva
- A.M. Butlerov Institute of Chemistry
- Kazan (Volga region) Federal University
- Kazan 420008
- Russian Federation
| | - Olga A. Lodochnikova
- Arbuzov Institute of Organic and Physical Chemistry
- FRC Kazan Scientific Center
- Russian Academy of Sciences
- Kazan 420088
- Russian Federation
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10
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Gerasimova DP, Saifina AF, Zakharychev DV, Vandyukova II, Fayzullin RR, Kurbangalieva AR, Lodochnikova OA. Packing Polymorphism on the Example of 5-Hydroxy-1-(4-Methylbenzyl)-3-Chloro-4-[(4-Chlorophenyl)Sulfanyl]-1,5-Dihydro-2H-Pyrrol-2-One: A Crystallographic, Thermochemical, and Spectroscopic Study. J STRUCT CHEM+ 2020. [DOI: 10.1134/s0022476620030142] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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11
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Clevers S, Coquerel G. Kryptoracemic compound hunting and frequency in the Cambridge Structural Database. CrystEngComm 2020. [DOI: 10.1039/d0ce00303d] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Determination of kryptoracemic compound frequency in the Cambridge Structural Database using CCDC Python API script.
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Affiliation(s)
- Simon Clevers
- Normandie Université
- Laboratoire SMS-EA3233
- Université de Rouen Normandie
- Mont Saint Aignan
- France
| | - Gérard Coquerel
- Normandie Université
- Laboratoire SMS-EA3233
- Université de Rouen Normandie
- Mont Saint Aignan
- France
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12
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Lodochnikova OA, Latypova LZ, Madzhidov TI, Chmutova GA, Voronina JK, Gubaidullin AT, Kurbangalieva AR. “Lp⋯synthon” interaction as a reason for the strong amplification of synthon-forming hydrogen bonds. CrystEngComm 2019. [DOI: 10.1039/c8ce01982g] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new type of interaction is presented.
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Affiliation(s)
- Olga A. Lodochnikova
- Arbuzov Institute of Organic and Physical Chemistry
- FRC Kazan Scientific Center of RAS
- Kazan 420088
- Russian Federation
- A.M. Butlerov Institute of Chemistry
| | - Liliya Z. Latypova
- A.M. Butlerov Institute of Chemistry
- Kazan Federal University
- Kazan 420008
- Russian Federation
| | - Timur I. Madzhidov
- A.M. Butlerov Institute of Chemistry
- Kazan Federal University
- Kazan 420008
- Russian Federation
| | - Galina A. Chmutova
- A.M. Butlerov Institute of Chemistry
- Kazan Federal University
- Kazan 420008
- Russian Federation
| | - Julia K. Voronina
- Arbuzov Institute of Organic and Physical Chemistry
- FRC Kazan Scientific Center of RAS
- Kazan 420088
- Russian Federation
- Institute of General and Inorganic Chemistry
| | - Aidar T. Gubaidullin
- Arbuzov Institute of Organic and Physical Chemistry
- FRC Kazan Scientific Center of RAS
- Kazan 420088
- Russian Federation
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13
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Lodochnikova OA, Zaripova AR, Fayzullin RR, Samigullina AI, Vandyukova II, Potapova LN, Kurbangalieva AR. “Doubly enantiophobic” behavior during crystallization of racemic 1,5-dihydro-2H-pyrrol-2-one thioether. CrystEngComm 2018. [DOI: 10.1039/c8ce00369f] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
One racemate forms two conglomerates and no racemic compound.
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Affiliation(s)
- Olga A. Lodochnikova
- Arbuzov Institute of Organic and Physical Chemistry
- FRC Kazan Scientific Center of RAS
- Kazan 420088
- Russian Federation
- A.M. Butlerov Institute of Chemistry
| | - Aigul R. Zaripova
- Arbuzov Institute of Organic and Physical Chemistry
- FRC Kazan Scientific Center of RAS
- Kazan 420088
- Russian Federation
- A.M. Butlerov Institute of Chemistry
| | - Robert R. Fayzullin
- Arbuzov Institute of Organic and Physical Chemistry
- FRC Kazan Scientific Center of RAS
- Kazan 420088
- Russian Federation
| | - Aida I. Samigullina
- Arbuzov Institute of Organic and Physical Chemistry
- FRC Kazan Scientific Center of RAS
- Kazan 420088
- Russian Federation
| | - Irina I. Vandyukova
- Arbuzov Institute of Organic and Physical Chemistry
- FRC Kazan Scientific Center of RAS
- Kazan 420088
- Russian Federation
| | - Lubov N. Potapova
- A.M. Butlerov Institute of Chemistry
- Kazan Federal University
- Kazan 420008
- Russian Federation
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