Enhancing resolution in DNA staining dye-based label-free visual fluorescence aptasensor: Strategy for eliminating non-specific binding-induced signal interference

By optimizing the quenching capabilities of diverse two-dimensional (2D) nanomaterials such as graphene oxide (GO), Ti3C2 MXene, and MoS2, we have pioneered a label-free fluorescence aptasensor with near-zero background signal, enabling highly sensitive detection of aflatoxin B1 (AFB1). This aptasensor was equipped with a newly synthesized dicationic fluorophore, VLM, which exhibited binding-induced turn-on fluorescence properties. Among the evaluated 2D nanosheets, MoS2 nanosheets were found to exhibit exceptional quenching efficiency for the background emission of the cDNA/VLM complex (cDNA was the complementary DNA of the aptamer), further enhancing the overall performance of our aptasensor. Upon exposure to AFB1, the aptamers underwent conformational switching and target binding, leading to the formation of aptamer/AFB1 complex. Additionally, the aptamers bound complementarily to cDNA, creating aptamer-cDNA duplexes that interacted with VLM, resulting in a robust fluorescence signal. Despite the presence of a weakly fluorescent cDNA/VLM background, this fluorescence could be effectively quenched by the addition of MoS2 nanosheets. Consequently, the label-free fluorescence aptasensor exhibited excellent linearity with AFB1 concentration within 2-3000 ng mL-1, achieving a limit of detection (LOD) of 0.006 ng mL-1. Remarkably, the visual fluorescence captured by a smartphone camera can be processed using extracted grayscale values, consistently revealing a linear relationship with the AFB1 concentration within 2-3000 ng mL-1, with a LOD of 0.197 ng mL-1. This aptasensor demonstrated exceptional sensitivity and a remarkably rapid sample-to-answer detection time of 74 min, showcasing its immense potential as a straightforward, sensitive, and visually intuitive method for rapid AFB1 detection with enhanced resolution.

A rapid investigation of near-infrared (NIR) fluorescent switch-on probes for detection and in cellulo tracking of G-quadruplex and double-stranded DNA

This review provides a comprehensive overview of the recent advancements in Near Infrared (NIR) fluorescence switch-on probes designed for the detection and in cellulo tracking of G-quadruplex and double-stranded DNA (dsDNA). G-quadruplexes, non-canonical DNA structures, play pivotal roles in regulating various biological processes, making them critical targets for therapeutic and diagnostic applications. The unique properties of NIR fluorescence probes, such as deep tissue penetration, minimal photodamage, and low autofluorescence background, offer significant advantages for bioimaging. We critically analyze the design strategies, photophysical properties, and binding mechanisms of various NIR fluorescence switch-on probes. Additionally, we discuss their efficacy and specificity in identifying G-quadruplexes and dsDNA within cellular environments. Key challenges and future directions for improving the sensitivity, selectivity, and biocompatibility of these probes are also highlighted. This review aims to underscore the potential of NIR fluorescence probes in advancing our understanding of DNA dynamics and their applications in biomedical research.

Programmed Assembly of DNA Templates by Silver Nanowires

DNA origami templates are known to exhibit many advantages to integrate functional components at desirable locations for nanoelectronic applications. In order to immobilize conducting or semiconducting species in a bottom-up approach, the programmed assembly of DNA templates is of utmost necessity. This report demonstrates the silver nanowires enabled bridging of two linear DNA origami (DO) nanostructures by utilizing the host-guest interaction of biotin-STV and sequence-specific silver metallization of poly(dG-dC) DNA nanowires (in 10 % yield) using (dA)₁₀ coated AgNPs (15 nm). The enzymatic synthesis of 750 bp, 1500 bp and 3000 bp bis-biotinylated poly(dG-dC), facile synthesis of 1 : 1 biotin-STV and silver-nanowire bridged DNA templates were characterized by gel electrophoresis, atomic force microscope imaging techniques. The strategy utilized here provides a method that can precisely connect heterogeneous templates towards bottom-up fabrication of practical nanoelectronics.