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Ali MA, Chen F, Hu Y, Lee SL. Structural Diversity of 2D Molecular Self-Assemblies Arising from Carboxyl Groups Attached to a Molecule: An STM Study at the Liquid-Solid Interface. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024. [PMID: 39264220 DOI: 10.1021/acs.langmuir.4c02661] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/13/2024]
Abstract
Understanding the molecular self-assembly behavior, especially at the microscopic level, sheds light on the rational design of artificial supramolecular systems at surfaces. In this work, scanning tunneling microscopy (STM) and force field simulations were utilized to explore two molecular systems where two and four carboxyl groups are symmetrically modified onto a skeleton. The two target molecules are 4,4'-(ethyne-1,2-diyl) dibenzoic acid (EBA) and 1,1'-ethynebenzene-3,3',5,5,'-tetracarboxylic acid (TCA). The former molecular assembly led to robust close packing, whereas the latter resulted in low-density arrangements that present significant adaption, namely, undergoing phase transformations upon external stimulations, e.g., sensitive to STM-polarity switching and guest molecule incorporations.
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Affiliation(s)
- Muhammad Atif Ali
- Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, China 518060
- Institute of Microscale Optoelectronic, College of Optical Engineering, Shenzhen University, Shenzhen, Guangdong, China 518060
| | - Fang Chen
- Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, China 518060
| | - Yi Hu
- Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, China 518060
| | - Shern-Long Lee
- Institute for Advanced Study, Shenzhen University, Shenzhen, Guangdong, China 518060
- Institute of Microscale Optoelectronic, College of Optical Engineering, Shenzhen University, Shenzhen, Guangdong, China 518060
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Peng X, Gan L, Zhai W, Chen X, Deng K, Duan W, Li W, Zeng Q. Two-dimensional self-assembly and co-assembly of two tetracarboxylic acid derivatives investigated by STM. NANOSCALE ADVANCES 2023; 5:4752-4757. [PMID: 37705796 PMCID: PMC10496876 DOI: 10.1039/d3na00389b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Accepted: 08/03/2023] [Indexed: 09/15/2023]
Abstract
In this work, the two-dimensional self-assembly and co-assembly behaviors of two tetracarboxylic acid derivatives (H4BDETP and H4BTB) were investigated by scanning tunneling microscopy (STM). H4BDETP molecules self-assembled into linear nanostructures, and H4BTB molecules formed lamellar and tetragonal nanostructures. The formation of a H4BDETP/H4BTB co-assembly nanostructure was closely related to the deposition sequence of H4BDETP and H4BTB on highly oriented pyrolytic graphite (HOPG). The introduction of H4BTB into the self-assembly system of H4BDETP resulted in the emergence of the H4BDETP/H4BTB nanostructure, while the addition of H4BDETP had no effect on the self-assembly system of H4BTB and a H4BDETP/H4BTB co-assembly nanostructure was not obtained.
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Affiliation(s)
- Xuan Peng
- CAS Key Laboratory of Standardization and Measurement for Nanotechnology, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology (NCNST) Beijing 100190 China
- School of Science, Nanchang Institute of Technology Nanchang 330099 China
| | - Linlin Gan
- CAS Key Laboratory of Standardization and Measurement for Nanotechnology, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology (NCNST) Beijing 100190 China
- Department of Chemistry, School of Science, Beijing Jiaotong University Beijing 100044 China
| | - Wenchao Zhai
- School of Science, Nanchang Institute of Technology Nanchang 330099 China
| | - Xiaoling Chen
- School of Science, Nanchang Institute of Technology Nanchang 330099 China
| | - Ke Deng
- CAS Key Laboratory of Standardization and Measurement for Nanotechnology, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology (NCNST) Beijing 100190 China
| | - Wubiao Duan
- Department of Chemistry, School of Science, Beijing Jiaotong University Beijing 100044 China
| | - Wei Li
- School of Science, Nanchang Institute of Technology Nanchang 330099 China
| | - Qingdao Zeng
- CAS Key Laboratory of Standardization and Measurement for Nanotechnology, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology (NCNST) Beijing 100190 China
- Center of Materials Science and Optoelectronics Engineering, University of Chinese Academy of Sciences Beijing 100049 China
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Nelson DR, Hazzouri KM, Lauersen KJ, Jaiswal A, Chaiboonchoe A, Mystikou A, Fu W, Daakour S, Dohai B, Alzahmi A, Nobles D, Hurd M, Sexton J, Preston MJ, Blanchette J, Lomas MW, Amiri KMA, Salehi-Ashtiani K. Large-scale genome sequencing reveals the driving forces of viruses in microalgal evolution. Cell Host Microbe 2021; 29:250-266.e8. [PMID: 33434515 DOI: 10.1016/j.chom.2020.12.005] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Revised: 10/08/2020] [Accepted: 11/18/2020] [Indexed: 01/08/2023]
Abstract
Being integral primary producers in diverse ecosystems, microalgal genomes could be mined for ecological insights, but representative genome sequences are lacking for many phyla. We cultured and sequenced 107 microalgae species from 11 different phyla indigenous to varied geographies and climates. This collection was used to resolve genomic differences between saltwater and freshwater microalgae. Freshwater species showed domain-centric ontology enrichment for nuclear and nuclear membrane functions, while saltwater species were enriched in organellar and cellular membrane functions. Further, marine species contained significantly more viral families in their genomes (p = 8e-4). Sequences from Chlorovirus, Coccolithovirus, Pandoravirus, Marseillevirus, Tupanvirus, and other viruses were found integrated into the genomes of algal from marine environments. These viral-origin sequences were found to be expressed and code for a wide variety of functions. Together, this study comprehensively defines the expanse of protein-coding and viral elements in microalgal genomes and posits a unified adaptive strategy for algal halotolerance.
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Affiliation(s)
- David R Nelson
- Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, UAE.
| | - Khaled M Hazzouri
- Khalifa Center for Genetic Engineering and Biotechnology (KCGEB), UAE University, Al Ain, Abu Dhabi, UAE; Biology Department, College of Science, UAE University, Al Ain, Abu Dhabi, UAE
| | - Kyle J Lauersen
- Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia
| | - Ashish Jaiswal
- Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE
| | | | - Alexandra Mystikou
- Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, UAE
| | - Weiqi Fu
- Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE
| | - Sarah Daakour
- Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, UAE
| | - Bushra Dohai
- Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE
| | - Amnah Alzahmi
- Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, UAE
| | - David Nobles
- UTEX Culture Collection of Algae at the University of Texas at Austin, Austin, TX, USA
| | - Mark Hurd
- National Center for Marine Algae and Microbiota, East Boothbay, ME, USA
| | - Julie Sexton
- National Center for Marine Algae and Microbiota, East Boothbay, ME, USA
| | - Michael J Preston
- National Center for Marine Algae and Microbiota, East Boothbay, ME, USA
| | - Joan Blanchette
- National Center for Marine Algae and Microbiota, East Boothbay, ME, USA
| | - Michael W Lomas
- National Center for Marine Algae and Microbiota, East Boothbay, ME, USA
| | - Khaled M A Amiri
- Khalifa Center for Genetic Engineering and Biotechnology (KCGEB), UAE University, Al Ain, Abu Dhabi, UAE; Biology Department, College of Science, UAE University, Al Ain, Abu Dhabi, UAE
| | - Kourosh Salehi-Ashtiani
- Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, UAE; Division of Science and Math, New York University Abu Dhabi, Abu Dhabi, UAE.
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Yuan C, Xue N, Zhang X, Zhang Y, Li N, Xue Q, Wu T, Hou S, Wang Y. A two-dimensional crystal formed by pentamers on Au(111). Chem Commun (Camb) 2019; 55:5427-5430. [DOI: 10.1039/c9cc01658a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new type of two-dimensional crystal comprising supramolecular pentamers on Au(111) is studied using an ultra-high vacuum low-temperature scanning tunnelling microscope.
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Affiliation(s)
- Chenyang Yuan
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Na Xue
- Peking University Information Technology Institute (Tianjin, Binhai)
- Tianjin 300450
- China
| | - Xue Zhang
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Yajie Zhang
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Na Li
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Qiang Xue
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Tianhao Wu
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Shimin Hou
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
| | - Yongfeng Wang
- Key Laboratory for the Physics and Chemistry of Nanodevices
- Department of Electronics
- Peking University
- Beijing 100871
- China
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