1
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Sahewal S, Ghosh S, Pradhan P, Sharma PK, Saifuddin M, Patra BK, Senanayak SP, Das S. S-Heterocyclic s-Indacenodifluorene: Synthesis, Properties, and Thermally Tunable Ambipolar Field-Effect Mobility. Chemistry 2025; 31:e202500725. [PMID: 40198112 DOI: 10.1002/chem.202500725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2025] [Revised: 03/27/2025] [Accepted: 04/08/2025] [Indexed: 04/10/2025]
Abstract
Design of semiconducting materials with facile control of charge transport and the nature of charge carriers is essential for realizing niche applications with organic electronics. Described herein are the synthesis, crystal structure, and analysis of the electronic properties of a four-stage redox amphoteric S-heterocyclic s-indacenodifluorene 6, including the study of its ambipolar charge carrier mobility (µh and µe) in organic field-effect transistor (OFET) devices. Despite being electron-rich, our investigation revealed reversible reduction potentials for 6 in the cyclic voltammetry, which is attributed to the recovery of locally aromatic thiophene and cyclopentadienyl anion units upon electron injection for the two antiaromatic S-heterocyclic as-indacene units in accordance with the Glidewell-Lloyd rule of aromaticity. In line with this, we observed an interesting thermal tunability of the nature of charge carriers from p-type to balanced ambipolar to n-type charge transport with reasonable semiconductor mobility in all regimes of transport. This behavior is correlated with the modification of the transport levels upon annealing of the semiconductor and possible increase in the extent of π-electron delocalization with increasing temperature. This proof-of-concept tunability of the nature of charge transport indicates the efficacy of our molecular design.
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Affiliation(s)
- Sakshi Sahewal
- Department of Chemistry, Indian Institute of Technology Ropar, Rupnagar, Punjab, 140001, India
| | - Subhashis Ghosh
- Nanoelectronics and Device Physics Lab, School of Physical Sciences, National Institute of Science Education and Research, OCC of HBNI, Jatni, Khurda, Odisha, 752050, India
| | - Prabhanjan Pradhan
- Materials Chemistry Department, CSIR-Institute of Minerals and Materials Technology, Bhubaneshwar, 751013, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Priyank Kumar Sharma
- Department of Chemistry, Indian Institute of Technology Ropar, Rupnagar, Punjab, 140001, India
| | - Md Saifuddin
- Nanoelectronics and Device Physics Lab, School of Physical Sciences, National Institute of Science Education and Research, OCC of HBNI, Jatni, Khurda, Odisha, 752050, India
| | - Biplab K Patra
- Materials Chemistry Department, CSIR-Institute of Minerals and Materials Technology, Bhubaneshwar, 751013, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Satyaprasad P Senanayak
- Nanoelectronics and Device Physics Lab, School of Physical Sciences, National Institute of Science Education and Research, OCC of HBNI, Jatni, Khurda, Odisha, 752050, India
- Centre for Interdisciplinary Sciences, National Institute of Science Education and Research Bhubaneswar, Jatni, Khurda, Odisha, 752050, India
| | - Soumyajit Das
- Department of Chemistry, Indian Institute of Technology Ropar, Rupnagar, Punjab, 140001, India
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2
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Demachkie IS, Miller MP, Warren GI, Barker JE, Strand ET, Zakharov LN, Haley MM. Intramolecular Charge Transfer in Antiaromatic Donor/Acceptor-Fused s-Indacenes. Angew Chem Int Ed Engl 2025; 64:e202420989. [PMID: 39632746 DOI: 10.1002/anie.202420989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2024] [Revised: 12/03/2024] [Accepted: 12/04/2024] [Indexed: 12/07/2024]
Abstract
Herein we report the synthesis and characterization of four donor/acceptor-fused s-indacenes via the late-stage oxidation of a family of unsymmetrical benzofuran/benzothiophene-s-indacene regioisomers. A thorough study of their properties through experimental and computational analysis has revealed the effect of asymmetry on the molecular properties associated with antiaromaticity, as well as a strong correlation between antiaromaticity and intramolecular charge transfer (ICT). The strength of the charge transfer depends on the fusion orientation of the donor and acceptor motifs relative to the s-indacene core. The two most antiaromatic oxidized isomers exhibit strong evidence of ICT with 30 and 40 nm solvatochromic shifts.
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Affiliation(s)
- Isabella S Demachkie
- Department of Chemistry and Biochemistry and the Materials Science Institute, University of Oregon, Eugene, Oregon, 97403-1253, United States
| | - Michael P Miller
- Department of Chemistry and Biochemistry and the Materials Science Institute, University of Oregon, Eugene, Oregon, 97403-1253, United States
| | - Gabrielle I Warren
- Department of Chemistry and Biochemistry and the Materials Science Institute, University of Oregon, Eugene, Oregon, 97403-1253, United States
| | - Joshua E Barker
- Department of Chemistry and Biochemistry and the Materials Science Institute, University of Oregon, Eugene, Oregon, 97403-1253, United States
| | - Eric T Strand
- Department of Chemistry and Biochemistry and the Materials Science Institute, University of Oregon, Eugene, Oregon, 97403-1253, United States
| | - Lev N Zakharov
- Center for Advanced Materials Characterization at Oregon (CAMCOR), University of Oregon, Eugene, Oregon, 97403-1433, United States
| | - Michael M Haley
- Department of Chemistry and Biochemistry and the Materials Science Institute, University of Oregon, Eugene, Oregon, 97403-1253, United States
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3
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Warren GI, Młodzikowska-Pieńko K, Jalife S, Demachkie IS, Wu JI, Haley MM, Gershoni-Poranne R. Effects of benzoheterocyclic annelation on the s-indacene core: a computational analysis. Chem Sci 2025; 16:575-583. [PMID: 39568951 PMCID: PMC11575598 DOI: 10.1039/d4sc06812b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2024] [Accepted: 11/05/2024] [Indexed: 11/22/2024] Open
Abstract
Aromaticity and antiaromaticity are pivotal concepts in chemistry, with significant implications for molecular properties and reactivity. In particular, thanks to their increased conductivity and small HOMO-LUMO energy gaps, antiaromatic molecules are promising for use in organic electronics. The inherent instability of such molecules is often addressed by carbocyclic fusion, which also reduces the antiaromaticity of the core structure. Herein, we have employed a computational approach to explore the effects of heterocyclic fusion on the s-indacene core, focusing on three main aspects: the impact of the heteroatom, the heterocycle, and extended conjugation. We found that the heteroatoms themselves can substantially modulate antiaromaticity, and that the site of substitution plays a large role in the extent of stabilization afforded. Heterocycle fusion further modulates antiaromaticity, though to a lesser extent than the heteroatom effect. This effect diminishes upon benzannelation, highlighting the complexity of aromatic and antiaromatic interplay. Our findings offer a nuanced understanding of the factors affecting antiaromaticity in s-indacene-based polycyclic systems, providing a conceptual framework for predicting and tuning these properties for applications in organic electronics. This work underscores the importance of both substitution position and heterocyclic fusion in designing stable antiaromatic compounds.
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Affiliation(s)
- Gabrielle I Warren
- Department of Chemistry & Biochemistry and the Materials Science Institute, University of Oregon Eugene Oregon 97403 USA
- Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion - Israel Institute of Technology Haifa 32000 Israel
| | - Katarzyna Młodzikowska-Pieńko
- Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion - Israel Institute of Technology Haifa 32000 Israel
| | - Said Jalife
- Department of Chemistry, University of Houston Houston Texas 77204 USA
| | - Isabella S Demachkie
- Department of Chemistry & Biochemistry and the Materials Science Institute, University of Oregon Eugene Oregon 97403 USA
| | - Judy I Wu
- Department of Chemistry, University of Houston Houston Texas 77204 USA
| | - Michael M Haley
- Department of Chemistry & Biochemistry and the Materials Science Institute, University of Oregon Eugene Oregon 97403 USA
| | - Renana Gershoni-Poranne
- Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion - Israel Institute of Technology Haifa 32000 Israel
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4
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Yue Z, Lu G, Wei W, Deng Y, Yang L, Shao S, Chen X, Huang Y, Qian J, Fan X. Specific Photocatalytic C-C Coupling of Benzyl Alcohol to Deoxybenzoin or Benzoin by Precise Control of C α-H Bond Activation or O-H Bond Activation by Adjusting the Adsorption Orientation of Hydrobenzoin Intermediates. ACS Catal 2024; 14:15306-15324. [PMID: 39444527 PMCID: PMC11494511 DOI: 10.1021/acscatal.4c03426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 09/25/2024] [Accepted: 09/26/2024] [Indexed: 10/25/2024]
Abstract
Benzyl alcohol (BA) is a major biomass derivative and can be further converted into deoxybenzoin (DOB) and benzoin (BZ) as high-value products for industrial applications through photocatalytic C-C coupling reaction. The photocatalytic process contains two reaction steps, which are (1) the C-C coupling of BA to hydrobenzoin (HB) intermediates and (2) either dehydration of HB to DOB or dehydrogenation of HB to BZ. We found that generation of DOB or BZ is mainly determined by the activation of Cα-H or O-H bonds in HB. In this study, phase junction CdS photocatalysts and Ni/CdS photocatalysts were elaborately designed to precisely control the activation of Cα-H or O-H bonds in HB by adjusting the adsorption orientation of HB on the photocatalyst surfaces. After orienting the Cα-H groups in HB on the CdS surfaces, the Cα-H bond dissociation energy (BDE) at 1.39 eV is lower than the BDE of the O-H bond at 2.69 eV, therefore improving the selectivity of the DOB. Conversely, on Ni/CdS photocatalysts, the O-H groups in HB orient toward the photocatalyst surfaces. The BDE of the O-H bonds is 1.11 eV to form BZ, which is lower than the BDE of the Cα-H bonds to the DOB (1.33 eV), thereby enhancing the selectivity of BZ. As a result, CdS photocatalysts can achieve complete conversion of BA to 80.4% of the DOB after 9 h of visible light irradiation, while 0.3% Ni/CdS photocatalysts promote complete conversion of BA to 81.5% of BZ after only 5 h. This work provides a promising strategy in selective conversion of BA to either DOB or BZ through delicate design of photocatalysts.
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Affiliation(s)
- Zongyang Yue
- Institute
for Materials and Processes, School of Engineering, The University of Edinburgh, Edinburgh EH9 3BF, U.K.
| | - Guanchu Lu
- Institute
for Materials and Processes, School of Engineering, The University of Edinburgh, Edinburgh EH9 3BF, U.K.
| | - Wenjing Wei
- Institute
for Materials and Processes, School of Engineering, The University of Edinburgh, Edinburgh EH9 3BF, U.K.
| | - Yanan Deng
- Institute
for Materials and Processes, School of Engineering, The University of Edinburgh, Edinburgh EH9 3BF, U.K.
| | - Luxi Yang
- Institute
for Materials and Processes, School of Engineering, The University of Edinburgh, Edinburgh EH9 3BF, U.K.
| | - Shibo Shao
- Institute
for Materials and Processes, School of Engineering, The University of Edinburgh, Edinburgh EH9 3BF, U.K.
- Petrochemical
Research Institute, PetroChina Company Limited, Beijing 102206, China
| | - Xianfeng Chen
- Institute
for Bioengineering, School of Engineering, The University of Edinburgh, Edinburgh EH9 3BF, U.K.
| | - Yi Huang
- Institute
for Materials and Processes, School of Engineering, The University of Edinburgh, Edinburgh EH9 3BF, U.K.
| | - Jianhua Qian
- School
of Petrochemical Engineering, Liaoning Petrochemical
University, Fushun 113001, China
| | - Xianfeng Fan
- Institute
for Materials and Processes, School of Engineering, The University of Edinburgh, Edinburgh EH9 3BF, U.K.
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5
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Valiulina LI, Cherepanov VN, Khoroshkin K. Insight into magnetically induced ring currents and photophysics of six-porphyrin nanorings. Phys Chem Chem Phys 2024; 26:22337-22345. [PMID: 39157944 DOI: 10.1039/d4cp02547d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/20/2024]
Abstract
The series of nanorings based on Zn-porphyrins and tetraoxa-isophlorins in different oxidation states (Q = 0, 2+, 4+, 6+) have been studied studied computationally at density functional theory level (DFT) using BHandHLYP functional combined with def2-SVP basis sets. Magnetically induced ring currents of nanorings have been calculated using the GIMIC method and the Ampère-Maxwell integration scheme. Ring current calculations show that neutral nanorings sustain equal diatropic and paratropic currents of 8 nA T-1, resulting in zero net ring current strengths. The charged nanorings sustain strong ring currents with tropicity depending on the oxidation state Q. Among the considered nanorings, the nanoring composed of 6 isophlorins c-Iso66+ is the most aromatic with a ring current of IGIMIC = 81.6 nA T-1. The structure c-P62+ with a ring current of IGIMIC = 54.9 nA T-1 can be considered as the most aromatic among the synthesized porphyrin nanorings. Spin-orbit coupling matrix elements, oscillator strengths, and excitation energies calculated at the CAM-B3LYP/def2-SVP level of theory were used to estimate rate constants for radiative and nonradiative processes. The algorithm based on X-H approximation were used to calculate the internal conversion rates (kIC). The main channel for the deactivation of the excitation energy in the studied nanorings is the process of internal conversion. The deactivation of excited energy occurs due to the vibrations of certain groups of C-H bonds in the nanorings. The nanoring c-Iso6 has magnetically allowed low-lying transitions that contributes significantly to the paratropic ring current, resulting in strong local antiaromaticity in the tetraoxa-isophlorin units.
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Affiliation(s)
- Lenara I Valiulina
- Department of Optics and Spectroscopy, Tomsk State University, Tomsk, 634050, Russia.
| | - Victor N Cherepanov
- Department of Optics and Spectroscopy, Tomsk State University, Tomsk, 634050, Russia.
| | - Kirill Khoroshkin
- Department of Optics and Spectroscopy, Tomsk State University, Tomsk, 634050, Russia.
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6
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Denison SB, Jin P, Zygourakis K, Senftle TP, Alvarez PJJ. Mechanistic Implications of the Varying Susceptibility of PAHs to Pyro-Catalytic Treatment as a Function of Their Ionization Potential and Hydrophobicity. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024. [PMID: 39021055 DOI: 10.1021/acs.est.4c04811] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/20/2024]
Abstract
Transition metal catalysts in soil constituents (e.g., clays) can significantly decrease the pyrolytic treatment temperature and energy requirements for efficient removal of polycyclic aromatic hydrocarbons (PAHs) and, thus, lead to more sustainable remediation of contaminated soils. However, the catalytic mechanism and its rate-limiting steps are not fully understood. Here, we show that PAHs with lower ionization potential (IP) are more easily removed by pyro-catalytic treatment when deposited onto Fe-enriched bentonite (1.8% wt. ion-exchanged content). We used four PAHs with decreasing IP: naphthalene > pyrene > benz(a)anthracene > benzo(g,h,i)perylene. Density functional theory (DFT) calculations showed that lower IP results in stronger PAH adsorption to Fe(III) sites and easier transfer of π-bond electrons from the aromatic ring to Fe(III) at the onset of pyrolysis. We postulate that the formation of aromatic radicals via this direct electron transfer (DET) mechanism is the initiation step of a cascade of aromatic polymerization reactions that eventually convert PAHs to a non-toxic and fertility-preserving char, as we demonstrated earlier. However, IP is inversely correlated with PAH hydrophobicity (log Kow), which may limit access to the Fe(III) catalytic sites (and thus DET) if it increases PAH sorption to soil OM. Thus, ensuring adequate contact between sorbed PAHs and the catalytic reaction centers represents an engineering challenge to achieve faster remediation with a lower carbon footprint via pyro-catalytic treatment.
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7
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Wahab A, Gershoni-Poranne R. COMPAS-3: a dataset of peri-condensed polybenzenoid hydrocarbons. Phys Chem Chem Phys 2024; 26:15344-15357. [PMID: 38758092 DOI: 10.1039/d4cp01027b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2024]
Abstract
We introduce the third installment of the COMPAS Project - a COMputational database of Polycyclic Aromatic Systems, focused on peri-condensed polybenzenoid hydrocarbons. In this installment, we develop two datasets containing the optimized ground-state structures and a selection of molecular properties of ∼39k and ∼9k peri-condensed polybenzenoid hydrocarbons (at the GFN2-xTB and CAM-B3LYP-D3BJ/cc-pvdz//CAM-B3LYP-D3BJ/def2-SVP levels, respectively). The manuscript details the enumeration and data generation processes and describes the information available within the datasets. An in-depth comparison between the two types of computation is performed, and it is found that the geometrical disagreement is maximal for slightly-distorted molecules. In addition, a data-driven analysis of the structure-property trends of peri-condensed PBHs is performed, highlighting the effect of the size of peri-condensed islands and linearly annulated rings on the HOMO-LUMO gap. The insights described herein are important for rational design of novel functional aromatic molecules for use in, e.g., organic electronics. The generated datasets provide a basis for additional data-driven machine- and deep-learning studies in chemistry.
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Affiliation(s)
- Alexandra Wahab
- The Laboratory for Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, 8093 Zurich, Switzerland
| | - Renana Gershoni-Poranne
- The Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion - Israel Institute of Technology, Haifa 32000, Israel.
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8
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Radenković S, Đorđević S, Nikolendžić M. Effect of Benzo-Annelation on Triplet State Energies in Polycyclic Conjugated Hydrocarbons. Chemistry 2024; 30:e202400361. [PMID: 38488676 DOI: 10.1002/chem.202400361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Indexed: 04/09/2024]
Abstract
In a series of earlier studies, the effect of benzo-annelation was found to be a useful tool for tuning the aromaticity in polycyclic conjugated compounds to desired level. In this work we studied the (anti)aromaticity of benzo-annelated derivatives of three conjugated hydrocarbons (anthracene, fluoranthene and biphenylene) in their lowest lying singlet (S0) and triplet (T1) states by means of the energy effect (ef), harmonic oscillator model of aromaticity (HOMA), multicentre delocalization indices (MCI), magnetically induced current densities (MICDs) and nucleus independent chemical shifts (NICS). We showed that benzo-annelation is a topology-based effect which can be used to modify the T1 state excitation energies (E(T1)). A quantitative model was established being able to accurately predict the E(T1) based only on the numbers of angularly, linearly and geminally annelated benzene rings. In addition, it was demonstrated that the E(T1) can be directly related to the (anti)aromatic character of the central ring in the studied molecules in their S0 state.
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Affiliation(s)
- Slavko Radenković
- University of Kragujevac, Faculty of Science, P.O. Box 60, Kragujevac, 34000, Serbia
| | - Slađana Đorđević
- University of Kragujevac, Faculty of Science, P.O. Box 60, Kragujevac, 34000, Serbia
| | - Marijana Nikolendžić
- University of Kragujevac, Faculty of Science, P.O. Box 60, Kragujevac, 34000, Serbia
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9
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Rončević I, Leslie FJ, Rossmannek M, Tavernelli I, Gross L, Anderson HL. Aromaticity Reversal Induced by Vibrations in Cyclo[16]carbon. J Am Chem Soc 2023; 145:26962-26972. [PMID: 38039504 PMCID: PMC10722511 DOI: 10.1021/jacs.3c10207] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2023] [Revised: 10/29/2023] [Accepted: 10/31/2023] [Indexed: 12/03/2023]
Abstract
Aromaticity is typically regarded as an intrinsic property of a molecule, correlated with electron delocalization, stability, and other properties. Small variations in the molecular geometry usually result in small changes in aromaticity, in line with Hammond's postulate. For example, introducing bond-length alternation in benzene and square cyclobutadiene by modulating the geometry along the Kekulé vibration gradually decreases the magnitude of their ring currents, making them less aromatic and less antiaromatic, respectively. A sign change in the ring current, corresponding to a reversal of aromaticity, typically requires a gross perturbation such as electronic excitation, addition or removal of two electrons, or a dramatic change in the molecular geometry. Here, we use multireference calculations to show how movement along the Kekulé vibration, which controls bond-length alternation, induces a sudden reversal in the ring current of cyclo[16]carbon, C16. This reversal occurs when the two orthogonal π systems of C16 sustain opposing currents. These results are rationalized by a Hückel model which includes bond-length alternation, and which is combined with a minimal model accounting for orbital contributions to the ring current. Finally, we successfully describe the electronic structure of C16 with a "divide-and-conquer" approach suitable for execution on a quantum computer.
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Affiliation(s)
- Igor Rončević
- Department
of Chemistry, Oxford University, Chemistry
Research Laboratory, Oxford OX1 3TA, United
Kingdom
| | - Freddie J. Leslie
- Department
of Chemistry, Oxford University, Chemistry
Research Laboratory, Oxford OX1 3TA, United
Kingdom
| | - Max Rossmannek
- IBM
Research Europe − Zurich, Säumerstrasse 4, Rüschlikon 8803, Switzerland
| | - Ivano Tavernelli
- IBM
Research Europe − Zurich, Säumerstrasse 4, Rüschlikon 8803, Switzerland
| | - Leo Gross
- IBM
Research Europe − Zurich, Säumerstrasse 4, Rüschlikon 8803, Switzerland
| | - Harry L. Anderson
- Department
of Chemistry, Oxford University, Chemistry
Research Laboratory, Oxford OX1 3TA, United
Kingdom
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10
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Abstract
Heterole (pyrrole, thiophene, furan, thiophene-S,S-dioxide)-fused s-indacenes are known for their enhanced paratropic ring-current strength. However, the outcome of the antiaromatic properties for dibenzoheterole-fused s-indacene antiaromatics remained underexplored. Carbazole-, dibenzothiophene-, dibenzofuran-, and dibenzo[b,d]thiophene-5,5-dioxide-fused s-indacenes 1-4, respectively, were synthesized and characterized by experimental (NMR, single-crystal, UV-vis, CV) and computational (DFT) approaches to study the ground-state antiaromatic properties. Sulfone-containing 4 showed the weakest paratropic ring-current strength for the s-indacene unit, while 1-3 showed a relatively greater paratropicity for the s-indacene unit, as evidenced by the changes in 1H NMR chemical shifts of s-indacene protons. Such observation was explained by the electron-withdrawing effect of the sulfone group and loss of 4n + 2 aromaticity of the heterole unit for 4 reducing its s-indacene paratropicity strength as the nonaromaticity of the heterole unit reduces the π-bond character at the dibenzo[b,d]thiophene-5,5-dioxide/s-indacene fusion site to avoid antiaromatic s-indacene ring formation. The modulation of the paratropic ring-current strength of s-indacene for 1-4 was further supported by the NICS(1)zz and ring-current (ACID) calculations.
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Affiliation(s)
- Hemonta Kumar Saha
- Department of Chemistry, Indian Institute of Technology Ropar, Rupnagar 140001, Punjab, India
| | - Dibyendu Mallick
- Department of Chemistry, Presidency University, Kolkata 700073, West Bengal, India
| | - Soumyajit Das
- Department of Chemistry, Indian Institute of Technology Ropar, Rupnagar 140001, Punjab, India
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11
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Sparks N, Vijayan SM, Roy JK, Dorris A, Lambert E, Karunathilaka D, Hammer NI, Leszczynski J, Watkins DL. Synthesis and Characterization of Novel Thienothiadiazole-Based D-π-A-π-D Fluorophores as Potential NIR Imaging Agents. ACS OMEGA 2023; 8:24513-24523. [PMID: 37457472 PMCID: PMC10339328 DOI: 10.1021/acsomega.3c02602] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/16/2023] [Accepted: 06/12/2023] [Indexed: 07/18/2023]
Abstract
As fluorescence bioimaging has increased in popularity, there have been numerous reports on designing organic fluorophores with desirable properties amenable to perform this task, specifically fluorophores with emission in the near-infrared II (NIR-II) region. One such strategy is to utilize the donor-π-acceptor-π-donor approach (D-π-A-π-D), as this allows for control of the photophysical properties of the resulting fluorophores through modulation of the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) energy levels. Herein, we illustrate the properties of thienothiadiazole (TTD) as an effective acceptor moiety in the design of NIR emissive fluorophores. TTD is a well-known electron-deficient species, but its use as an acceptor in D-π-A-π-D systems has not been extensively studied. We employed TTD as an acceptor unit in a series of two fluorophores and characterized the photophysical properties through experimental and computational studies. Both fluorophores exhibited emission maxima in the NIR-I that extends into the NIR-II. We also utilized electron paramagnetic resonance (EPR) spectroscopy to rationalize differences in the measured quantum yield values and demonstrated, to our knowledge, the first experimental evidence of radical species on a TTD-based small-molecule fluorophore. Encapsulation of the fluorophores using a surfactant formed polymeric nanoparticles, which were studied by photophysical and morphological techniques. The results of this work illustrate the potential of TTD as an acceptor in the design of NIR-II emissive fluorophores for fluorescence bioimaging applications.
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Affiliation(s)
- Nicholas
E. Sparks
- Department
of Chemistry and Biochemistry, University
of Mississippi University, Oxford, Mississippi 38677, United States
- Department
of Chemistry and Biochemistry, The Ohio
State University, Columbus, Ohio 43210, United States
| | - Sajith M. Vijayan
- Department
of Chemistry and Biochemistry, University
of Mississippi University, Oxford, Mississippi 38677, United States
| | - Juganta K. Roy
- Interdisciplinary
Center for Nanotoxicity, Department of Chemistry, Physics and Atmospheric
Sciences, Jackson-State University, Jackson, Mississippi 39217, United States
| | - Austin Dorris
- Department
of Chemistry and Biochemistry, University
of Mississippi University, Oxford, Mississippi 38677, United States
| | - Ethan Lambert
- Department
of Chemistry and Biochemistry, University
of Mississippi University, Oxford, Mississippi 38677, United States
| | - Dilan Karunathilaka
- Department
of Chemistry and Biochemistry, University
of Mississippi University, Oxford, Mississippi 38677, United States
| | - Nathan I. Hammer
- Department
of Chemistry and Biochemistry, University
of Mississippi University, Oxford, Mississippi 38677, United States
| | - Jerzy Leszczynski
- Interdisciplinary
Center for Nanotoxicity, Department of Chemistry, Physics and Atmospheric
Sciences, Jackson-State University, Jackson, Mississippi 39217, United States
| | - Davita L. Watkins
- Department
of Chemistry and Biochemistry, University
of Mississippi University, Oxford, Mississippi 38677, United States
- Department
of Chemistry and Biochemistry, The Ohio
State University, Columbus, Ohio 43210, United States
- William
G. Lowrie Department of Chemical and Biomolecular Engineering, The Ohio State University, 151 W Woodruff Avenue, Columbus, Ohio 43210, United States
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12
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Pennachio M, Zhou Z, Wei Z, Tsybizova A, Gershoni-Poranne R, Petrukhina MA. Interplay of Charge and Aromaticity Upon Chemical Reduction of p-Quinquephenyl with Alkali Metals. Organometallics 2023. [DOI: 10.1021/acs.organomet.2c00583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Matthew Pennachio
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
| | - Zheng Zhou
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
- School of Materials Science and Engineering, Tongji University, 4800 Cao’an Road, Shanghai 201804, China
| | - Zheng Wei
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
| | - Alexandra Tsybizova
- Laboratory for Organic Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, Zurich 8092, Switzerland
| | - Renana Gershoni-Poranne
- Schulich Faculty of Chemistry, Technion − Israel Institute of Technology, Technion City, Haifa 32000, Israel
| | - Marina A. Petrukhina
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
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13
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Casademont‐Reig I, Woller T, García V, Contreras‐García J, Tiznado W, Torrent‐Sucarrat M, Matito E, Alonso M. Quest for the Most Aromatic Pathway in Charged Expanded Porphyrins. Chemistry 2023; 29:e202202264. [PMID: 36194440 PMCID: PMC10099525 DOI: 10.1002/chem.202202264] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Indexed: 11/05/2022]
Abstract
Despite the central role of aromaticity in the chemistry of expanded porphyrins, the evaluation of aromaticity remains difficult for these extended macrocycles. The presence of multiple conjugation pathways and different planar and nonplanar π-conjugation topologies makes the quantification of global and local aromaticity even more challenging. In neutral expanded porphyrins, the predominance of the aromatic conjugation pathway passing through the imine-type nitrogens and circumventing the amino NH groups is established. However, for charged macrocycles, the question about the main conjugation circuit remains open. Accordingly, different conjugation pathways in a set of neutral, anionic, and cationic expanded porphyrins were investigated by means of several aromaticity indices rooted in the structural, magnetic, and electronic criteria. Overall, our results reveal the predominance of the conjugation pathway that passes through all nitrogen atoms to describe the aromaticity of deprotonated expanded porphyrins, while the outer pathway through the perimeter carbon atoms becomes the most aromatic in protonated macrocycles. In nonplanar and charged macrocycles, a discrepancy between electronic and magnetic descriptors is observed. Nevertheless, our work demonstrates AVmin remains the best tool to determine the main conjugation pathway of expanded porphyrins.
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Affiliation(s)
- Irene Casademont‐Reig
- Department of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB)Pleinlaan 21050BrusselsBelgium
| | - Tatiana Woller
- Department of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB)Pleinlaan 21050BrusselsBelgium
- Laboratoire de Chimie Théorique (LCT)Sorbonne Universitéplace Jussieu 475052ParisFrance
| | - Victor García
- Computational and Theoretical Chemistry GroupDepartamento de Ciencias QuímicasFacultad de Ciencias ExactasUniversidad Andrés BelloRepública 498SantiagoChile
- Departamento Académico de FisicoquímicaFacultad de Química e Ingeniería QuímicaUniversidad Nacional Mayor de San MarcosLimaPeru
| | | | - William Tiznado
- Computational and Theoretical Chemistry GroupDepartamento de Ciencias QuímicasFacultad de Ciencias ExactasUniversidad Andrés BelloRepública 498SantiagoChile
| | - Miquel Torrent‐Sucarrat
- Donostia International Physics Center (DIPC)20018DonostiaEuskadiSpain
- Ikerbasque, Basque Foundation for Science48009BilbaoEuskadiSpain
- Department of Organic Chemistry IUniversidad del País Vasco/Euskal Herriko UnibertsitateaUPV/EHU)20018 Donostia, EuskadiSpain
| | - Eduard Matito
- Donostia International Physics Center (DIPC)20018DonostiaEuskadiSpain
- Ikerbasque, Basque Foundation for Science48009BilbaoEuskadiSpain
| | - Mercedes Alonso
- Department of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB)Pleinlaan 21050BrusselsBelgium
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14
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Paenurk E, Gershoni-Poranne R. Simple and efficient visualization of aromaticity: bond currents calculated from NICS values. Phys Chem Chem Phys 2022; 24:8631-8644. [PMID: 35132428 DOI: 10.1039/d1cp05757j] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Aromaticity is a fundamental concept in chemistry, underpinning the properties and reactivity of many organic compounds and materials. The ability to easily and accurately discern aromatic behavior is key to leveraging it as a design element, yet most aromaticity metrics struggle to combine accurate quantitative evaluation, intuitive interpretability, and user-friendliness. We introduce a new method, NICS2BC, which uses simple and inexpensive NICS calculations to generate information-rich and easily-interpreted bond-current graphs. We test the quantitative and qualitative characterizations afforded by NICS2BC for a selection of molecules of varying structural and electronic complexity, to demonstrate its accuracy and ease of analysis. Moreover, we show that NICS2BC successfully identifies ring-current patterns in molecules known to be difficult cases to interpret with NICS and enables deeper understanding of local aromaticity trends, demonstrating that our method adds additional insight.
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Affiliation(s)
- Eno Paenurk
- Laboratorium für Organische Chemie, Department of Chemistry and Applied Biosciences, ETH Zürich, 8093 Zürich, Switzerland
| | - Renana Gershoni-Poranne
- Laboratorium für Organische Chemie, Department of Chemistry and Applied Biosciences, ETH Zürich, 8093 Zürich, Switzerland.,Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Haifa 32000, Israel.
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15
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Osman Abdelkarim OI, Asiri AM. NBO Technique as a Descriptor of Aromaticity. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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16
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Wen Z, Karas LJ, Wu JIC. Hydrogen bonding interactions can decrease clar sextet character in acridone pigments. Org Biomol Chem 2021; 19:9619-9623. [PMID: 34708853 DOI: 10.1039/d1ob01720a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Computed nucleus-independent chemical shifts (NICS), contour plots of isotropic magnetic shielding (IMS), and gauge-including magnetically induced current (GIMIC) plots suggest that polarization of the π-system of acridones may perturb the numbers and positions of Clar sextet rings. Decreasing numbers of Clar sextets are connected to experimental observations of a narrowing HOMO-LUMO gap and increased charge mobility in solid-state assemblies of quinacridone and epindolidione.
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Affiliation(s)
- Zhili Wen
- Department of Chemistry, University of Houston, Houston, Texas 77204, USA.
| | - Lucas José Karas
- Department of Chemistry, University of Houston, Houston, Texas 77204, USA.
| | - Judy I-Chia Wu
- Department of Chemistry, University of Houston, Houston, Texas 77204, USA.
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17
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Tzeli D, Petsalakis ID, Theodorakopoulos G, Rahman FU, Yu Y, Rebek J. The role of electric field, peripheral chains, and magnetic effects on significant 1H upfield shifts of the encapsulated molecules in chalcogen-bonded capsules. Phys Chem Chem Phys 2021; 23:19647-19658. [PMID: 34524297 DOI: 10.1039/d1cp02277f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
The chalcogen-bonded homo-cavitand and hetero-cavitand AY+AY' capsules (Y, Y' = Se, Te), as well as their encapsulated complexes with one or two guest molecules have been studied theoretically via density functional theory (DFT), while the 1H NMR spectra of the homo-cavitand encapsulated complexes (in ASe+ASe) have been measured experimentally. There is excellent agreement between theoretical and experimental spectra. In all cases, we found significant 1H upfield shifts which are more intense in the ASe+ASe cage compared to the ATe+ATe and ASe+ATe cages. The non-uniform electron distribution which gives rise to an inherent electric field and a non-zero electric dipole moment of the encapsulated complexes, the induced electric field effects, the magnetic anisotropy which is enhanced due to the polarizability of chalcogen atoms, and the peripheral chains, which are responsible for the solubility of the cages, increase the upfield shifts of 1H of the encapsulated molecules; the peripheral chains lead to an increase of the upfield shifts by up to 1.8 ppm for H of the rim and up to 1.2 ppm for the terminal H in the interior of the cage. Hence, substantial 1H upfield chemical shifts of the guests in these capsules are consequences of (i) the enhanced aromaticity of the walls of the capsules due to the polarizability of chalcogen atoms, (ii) the induced and inherent electric field effects, and (iii) the peripheral chains.
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Affiliation(s)
- Demeter Tzeli
- Laboratory of Physical Chemistry, Department of Chemistry, National and Kapodistrian University of Athens, Panepistimiopolis Zografou, Athens 157 71, Greece. .,Theoretical and Physical Chemistry Institute, National Hellenic Research Foundation, 48 Vassileos Constantinou Ave., Athens 116 35, Greece.
| | - Ioannis D Petsalakis
- Theoretical and Physical Chemistry Institute, National Hellenic Research Foundation, 48 Vassileos Constantinou Ave., Athens 116 35, Greece.
| | - Giannoula Theodorakopoulos
- Theoretical and Physical Chemistry Institute, National Hellenic Research Foundation, 48 Vassileos Constantinou Ave., Athens 116 35, Greece.
| | - Faiz-Ur Rahman
- Inner Mongolia Mongolia University Research Center for Glycochemistry of Characteristic Medicinal Resources, Department of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot, China.,Center for Supramolecular Chemistry and Catalysis and Department of Chemistry, Shanghai University, 99 Shang-Da Road, Shanghai 200444, P. R. China
| | - Yang Yu
- Center for Supramolecular Chemistry and Catalysis and Department of Chemistry, Shanghai University, 99 Shang-Da Road, Shanghai 200444, P. R. China
| | - Julius Rebek
- Center for Supramolecular Chemistry and Catalysis and Department of Chemistry, Shanghai University, 99 Shang-Da Road, Shanghai 200444, P. R. China.,Skaggs Institute for Chemical Biology and Department of Chemistry, The Scripps Research Institute, La Jolla, California 92037, USA
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18
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Friederich P, Krenn M, Tamblyn I, Aspuru-Guzik A. Scientific intuition inspired by machine learning-generated hypotheses. MACHINE LEARNING-SCIENCE AND TECHNOLOGY 2021. [DOI: 10.1088/2632-2153/abda08] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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19
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Paenurk E, Feusi S, Gershoni-Poranne R. Predicting bond-currents in polybenzenoid hydrocarbons with an additivity scheme. J Chem Phys 2021; 154:024110. [DOI: 10.1063/5.0038292] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Affiliation(s)
- Eno Paenurk
- Laboratorium für Organische Chemie, ETH Zurich, Switzerland
| | - Stefan Feusi
- Laboratorium für Organische Chemie, ETH Zurich, Switzerland
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20
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Vijayan SM, Sparks N, Roy JK, Smith C, Tate C, Hammer NI, Leszczynski J, Watkins DL. Evaluating Donor Effects in Isoindigo-Based Small Molecular Fluorophores. J Phys Chem A 2020; 124:10777-10786. [PMID: 33305579 DOI: 10.1021/acs.jpca.0c07796] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Small molecular organic fluorophores have garnered significant interest because of their indispensable use in fluorescence imaging (FI) and optoelectronic devices. Herein, we designed triphenylamine (TPA)-capped donor-acceptor-donor (D-A-D)-based fluorophores having a variation at the heterocyclic donor (D) units, 3,4-ethylenedioxythiophene (EDOT), furan (FURAN), thiophene (THIO), and 1-methyl-1H-pyrrole (MePyr), with isoindigo as the core electron acceptor (A) unit. Synthesis of these fluorophores (II-X-TPA) resulted in four symmetrical dye molecules: II-EDOT-TPA, II-FURAN-TPA, II-THIO-TPA, and II-MePyr-TPA, where TPA functioned as a terminal unit and a secondary electron donor group. Photophysical, electrochemical, and computational analyses were conducted to investigate the effect of heterocyclic donor units on the II-X-TPA derivatives. Density functional theory (DFT) and time-dependent DFT (TD-DFT) calculations provided insightful features of structural and electronic properties of each fluorophore and correlated well with experimental observations. Electron density distribution maps, overlapping frontier molecular orbital diagrams, and highest occupied molecular orbital (HOMO) to lowest unoccupied molecular orbital (LUMO) electron transfer indicated intramolecular charge transfer (ICT). Theoretical studies confirmed the experimental HOMO energy trend and demonstrated its crucial importance in understanding each heterocycle's donor ability. Stokes shifts of up to ∼178 nm were observed, whereas absorptions and emissions were shifted deeper into the NIR region, resulting from ICT. Results suggest that this isoindigo fluorophore series has potential as a molecular scaffold for the development of efficient FI agents. The studied fluorophores can be further tuned with different donor fragments to enhance the ICT and facilitate in shifting the optical properties further into the NIR region.
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Affiliation(s)
- Sajith M Vijayan
- Department of Chemistry and Biochemistry, University of Mississippi, Oxford, Mississippi 38677, United States
| | - Nicholas Sparks
- Department of Chemistry and Biochemistry, University of Mississippi, Oxford, Mississippi 38677, United States
| | - Juganta K Roy
- Interdisciplinary Center for Nanotoxicity, Department of Chemistry, Physics and Atmospheric Sciences, Jackson State University, Jackson, Mississippi 39217, United States
| | - Cameron Smith
- Department of Chemistry and Biochemistry, University of Mississippi, Oxford, Mississippi 38677, United States
| | - Christopher Tate
- Department of Chemistry and Biochemistry, University of Mississippi, Oxford, Mississippi 38677, United States
| | - Nathan I Hammer
- Department of Chemistry and Biochemistry, University of Mississippi, Oxford, Mississippi 38677, United States
| | - Jerzy Leszczynski
- Interdisciplinary Center for Nanotoxicity, Department of Chemistry, Physics and Atmospheric Sciences, Jackson State University, Jackson, Mississippi 39217, United States
| | - Davita L Watkins
- Department of Chemistry and Biochemistry, University of Mississippi, Oxford, Mississippi 38677, United States
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21
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Vu KB, Le Phuc Nhi T, Vu VV, Tung Ngo S. How do magnetic, structural, and electronic criteria of aromaticity relate to HOMO – LUMO gap? An evaluation for graphene quantum dot and its derivatives. Chem Phys 2020. [DOI: 10.1016/j.chemphys.2020.110951] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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22
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Bragato M, von Rudorff GF, von Lilienfeld OA. Data enhanced Hammett-equation: reaction barriers in chemical space. Chem Sci 2020; 11:11859-11868. [PMID: 34094415 PMCID: PMC8163012 DOI: 10.1039/d0sc04235h] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Accepted: 10/02/2020] [Indexed: 11/21/2022] Open
Abstract
It is intriguing how the Hammett equation enables control of chemical reactivity throughout chemical space by separating the effect of substituents from chemical process variables, such as reaction mechanism, solvent, or temperature. We generalize Hammett's original approach to predict potential energies of activation in non aromatic molecular scaffolds with multiple substituents. We use global regression to optimize Hammett parameters ρ and σ in two experimental datasets (rate constants for benzylbromides reacting with thiols and ammonium salt decomposition), as well as in a synthetic dataset consisting of computational activation energies of ∼2400 SN2 reactions, with various nucleophiles and leaving groups (-H, -F, -Cl, -Br) and functional groups (-H, -NO2, -CN, -NH3, -CH3). Individual substituents contribute additively to molecular σ with a unique regression term, which quantifies the inductive effect. The position dependence of substituents can be modeled by a distance decaying factor for SN2. Use of the Hammett equation as a base-line model for Δ-machine learning models of the activation energy in chemical space results in substantially improved learning curves reaching low prediction errors for small training sets.
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Affiliation(s)
- Marco Bragato
- Institute of Physical Chemistry and National Center for Computational Design and Discovery of Novel Materials (MARVEL), Department of Chemistry, University of Basel Klingelbergstrasse 80 CH-4056 Basel Switzerland
| | - Guido Falk von Rudorff
- Institute of Physical Chemistry and National Center for Computational Design and Discovery of Novel Materials (MARVEL), Department of Chemistry, University of Basel Klingelbergstrasse 80 CH-4056 Basel Switzerland
| | - O Anatole von Lilienfeld
- Institute of Physical Chemistry and National Center for Computational Design and Discovery of Novel Materials (MARVEL), Department of Chemistry, University of Basel Klingelbergstrasse 80 CH-4056 Basel Switzerland
- Faculty of Physics, University of Vienna Kolingasse 14-16 AT 1090 Vienna Austria
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23
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Ma Y, Cai D, Wan S, Wang P, Wang J, Zheng Q. Ladder‐Type Heteroheptacenes with Different Heterocycles for Nonfullerene Acceptors. Angew Chem Int Ed Engl 2020; 59:21627-21633. [PMID: 32790114 DOI: 10.1002/anie.202007907] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Revised: 07/16/2020] [Indexed: 11/12/2022]
Affiliation(s)
- Yunlong Ma
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences 155 Yangqiao Road West Fuzhou Fujian 350002 China
| | - Dongdong Cai
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences 155 Yangqiao Road West Fuzhou Fujian 350002 China
| | - Shuo Wan
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences 155 Yangqiao Road West Fuzhou Fujian 350002 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Pengsong Wang
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences 155 Yangqiao Road West Fuzhou Fujian 350002 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Jinyun Wang
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences 155 Yangqiao Road West Fuzhou Fujian 350002 China
| | - Qingdong Zheng
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences 155 Yangqiao Road West Fuzhou Fujian 350002 China
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24
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Ma Y, Cai D, Wan S, Wang P, Wang J, Zheng Q. Ladder‐Type Heteroheptacenes with Different Heterocycles for Nonfullerene Acceptors. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202007907] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Yunlong Ma
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences 155 Yangqiao Road West Fuzhou Fujian 350002 China
| | - Dongdong Cai
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences 155 Yangqiao Road West Fuzhou Fujian 350002 China
| | - Shuo Wan
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences 155 Yangqiao Road West Fuzhou Fujian 350002 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Pengsong Wang
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences 155 Yangqiao Road West Fuzhou Fujian 350002 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Jinyun Wang
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences 155 Yangqiao Road West Fuzhou Fujian 350002 China
| | - Qingdong Zheng
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences 155 Yangqiao Road West Fuzhou Fujian 350002 China
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25
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Venkatraman R, Panneer SVK, Varathan E, Subramanian V. Aromaticity-Photovoltaic Property Relationship of Triphenylamine-Based D-π-A Dyes: Leads from DFT Calculations. J Phys Chem A 2020; 124:3374-3385. [PMID: 32115951 DOI: 10.1021/acs.jpca.9b10245] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
D-π-A-based dyes find a wide range of applications in molecular electronics and photovoltaics in general and dye-sensitized solar cells (DSSC) in particular. We speculated whether there exists a relationship between the degree of aromaticity of the π-spacers used in the D-π-A type dyes and their structural, electronic, energetic, photophysical, and intramolecular charge transfer properties. Triphenylamine (TPA) and cyanoacrylic acid (CAA) have been chosen as the donor and acceptor, respectively. In order to carry out the investigation systematically the π-spacers have been logically chosen based on their experimental resonance energies, which follows the order, furan < pyrrole < thiophene < pyridine < benzene. All the properties have been discussed based on the degree of aromaticity of the π-spacers. Geometric properties such as dihedral angles and bond lengths have been discussed extensively. Energy levels of the frontier molecular orbitals, electrochemical properties, namely, ground and excited state oxidation potentials (GSOP/ESOP), and change in Gibbs free energy for electron injection and regeneration (ΔGinj/ΔGreg) have also been evaluated. Photophysical properties like wavelength of maximum absorption (λmax), oscillator strength (f), light harvesting efficiency (LHE), and intramolecular charge transfer properties, viz., charge transfer distance (DCT), fraction of charge transferred (qCT), and change in dipole moment (μCT) have been assessed. The adsorption characteristics of dye with (TiO2)9 nanocluster have been studied along with their optical properties. Results reveal that the nature of the relationship between the aforementioned properties and the extent of aromaticity of the π-spacers is inherently multifaceted. It thus turns out that it is highly difficult to quantify the relationship. These properties of D-π1-π2-A molecules can be regarded to be arising from two groups, namely, π-spacers with lower and higher resonance energies. This results in a natural trade-off in selection of competing properties. The qualitative aromaticity photovoltaic property relationship thus obtained may serve as a guide to tailor-design various properties of D-π-A type dyes for application in the intramolecular charge transfer devices.
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Affiliation(s)
- Raghavendra Venkatraman
- Inorganic and Physical Chemistry Division, CSIR-Central Leather Research Institute, Adyar, Chennai, 600020, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Shyam Vinod Kumar Panneer
- Inorganic and Physical Chemistry Division, CSIR-Central Leather Research Institute, Adyar, Chennai, 600020, India
| | - Elumalai Varathan
- Inorganic and Physical Chemistry Division, CSIR-Central Leather Research Institute, Adyar, Chennai, 600020, India
| | - Venkatesan Subramanian
- Inorganic and Physical Chemistry Division, CSIR-Central Leather Research Institute, Adyar, Chennai, 600020, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
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26
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Stanger A, Monaco G, Zanasi R. NICS‐
XY
‐Scan Predictions of Local, Semi‐Global, and Global Ring Currents in Annulated Pentalene and s‐Indacene Cores Compared to First‐Principles Current Density Maps. Chemphyschem 2019; 21:65-82. [DOI: 10.1002/cphc.201900952] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Revised: 10/23/2019] [Indexed: 11/09/2022]
Affiliation(s)
- Amnon Stanger
- Schulich faculty of ChemistryTechnion-Israel Institute of Technology Haifa 32000 Israel
| | - Guglielmo Monaco
- Dipartimento di Chimica e Biologia “A. Zambelli”Università degli Studi di Salerno via Giovanni Paolo II 132 Fisciano 84084, SA Italy
| | - Riccardo Zanasi
- Dipartimento di Chimica e Biologia “A. Zambelli”Università degli Studi di Salerno via Giovanni Paolo II 132 Fisciano 84084, SA Italy
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27
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Stuyver T, Danovich D, Shaik S. Captodative Substitution Enhances the Diradical Character of Compounds, Reduces Aromaticity, and Controls Single-Molecule Conductivity Patterns: A Valence Bond Study. J Phys Chem A 2019; 123:7133-7141. [PMID: 31318209 DOI: 10.1021/acs.jpca.9b06096] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The present contribution uses a valence bond (VB) perspective to consider the captodative substitution strategy, a method to enhance the diradical character of (potentially aromatic) compounds. We confirm the qualitative reasoning that has generally been used to rationalize the diradical-character-enhancing effect of captodative substitution: this type of substitution scheme disproportionally stabilizes specific Dewar/diradical(oid) VB structures, thus increasing their weight in the full ground-state wave function. Furthermore, we assess the effect of captodative substitution on the aromaticity of the considered compound. We observe a clear trade-off between diradical character and aromaticity for our model systems: as one of these properties increases, the other decreases. This finding is especially significant within the field of single-molecule electronics because it enables unification of the previously observed inverse proportionality between the aromaticity of a compound and the magnitude of conductance through that molecule, with the observed proportionality between diradical character and the magnitude of conductance associated with a compound. To some extent, both properties, i.e., aromaticity and diradical character, appear to be the flip-sides of the same coin.
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Affiliation(s)
- Thijs Stuyver
- Department of Organic Chemistry and the Lise Meitner-Minerva Centre for Computational Quantum Chemistry , The Hebrew University , Jerusalem 91904 , Israel.,Algemene Chemie , Vrije Universiteit Brussel , Pleinlaan 2 , 1050 Brussels , Belgium
| | - David Danovich
- Department of Organic Chemistry and the Lise Meitner-Minerva Centre for Computational Quantum Chemistry , The Hebrew University , Jerusalem 91904 , Israel
| | - Sason Shaik
- Department of Organic Chemistry and the Lise Meitner-Minerva Centre for Computational Quantum Chemistry , The Hebrew University , Jerusalem 91904 , Israel
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28
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Domingos SR, Martin K, Avarvari N, Schnell M. Water Docking Bias in [4]Helicene. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201902889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Sérgio R. Domingos
- Deutsches Elektronen-Synchrotron DESY Notkestraße 85 22607 Hamburg Germany
| | - Kévin Martin
- MOLTECH-Anjou, UMR 6200, CNRS, UNIV Angers 2 bd Lavoisier 49045 Angers Cedex France
| | - Narcis Avarvari
- MOLTECH-Anjou, UMR 6200, CNRS, UNIV Angers 2 bd Lavoisier 49045 Angers Cedex France
| | - Melanie Schnell
- Deutsches Elektronen-Synchrotron DESY Notkestraße 85 22607 Hamburg Germany
- Institut für Physikalische ChemieChristian-Albrechts-Universität zu Kiel Max-Eyth-Straße 1 24118 Kiel Germany
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Domingos SR, Martin K, Avarvari N, Schnell M. Water Docking Bias in [4]Helicene. Angew Chem Int Ed Engl 2019; 58:11257-11261. [PMID: 31081241 DOI: 10.1002/anie.201902889] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Revised: 05/10/2019] [Indexed: 11/06/2022]
Abstract
We report on the one- and two-water clusters of [4]helicene, the smallest polycyclic aromatic hydrocarbon with a helical sense, which were captured in the gas phase using high-resolution rotational spectroscopy. The structures of the complexes are unambiguously revealed using microwave spectra of isotopically enriched species. In the one-water cluster, the apparent splitting pattern is consistent with a tunneling motion that encompasses an exchange of strongly and weakly bonded water hydrogens. This motion is "locked" in the two-water cluster. The relevant intermolecular contacts, symmetry, and aromaticity effects are unveiled for the microsolvated chiral topologies. These observations entail the first glance at the structures and internal dynamics of the water binding motifs of a chiral polycyclic aromatic hydrocarbon.
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Affiliation(s)
- Sérgio R Domingos
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607, Hamburg, Germany
| | - Kévin Martin
- MOLTECH-Anjou, UMR 6200, CNRS, UNIV Angers, 2 bd Lavoisier, 49045, Angers Cedex, France
| | - Narcis Avarvari
- MOLTECH-Anjou, UMR 6200, CNRS, UNIV Angers, 2 bd Lavoisier, 49045, Angers Cedex, France
| | - Melanie Schnell
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607, Hamburg, Germany.,Institut für Physikalische Chemie, Christian-Albrechts-Universität zu Kiel, Max-Eyth-Straße 1, 24118, Kiel, Germany
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Escayola S, Callís M, Poater A, Solà M. Effect of Exocyclic Substituents and π-System Length on the Electronic Structure of Chichibabin Diradical(oid)s. ACS OMEGA 2019; 4:10845-10853. [PMID: 31460182 PMCID: PMC6648453 DOI: 10.1021/acsomega.9b00916] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Accepted: 06/03/2019] [Indexed: 06/10/2023]
Abstract
The ground state (GS) of Chichibabin's polycyclic hydrocarbons (CPHs) can be singlet [open- or closed-shell (OSS or CS)] or triplet (T), depending on the elongation of the π-system and the exocyclic substituents. CPHs with either a small singlet-triplet energy gap (ΔE ST) or even a triplet GS have potential applications in optoelectronics. To analyze the effect of the size and exocyclic substituents on the nature of the GS of CPHs, we have selected a number of them with different substituents in the exocyclic carbon atoms and different ring chain lengths. The OPBE/cc-pVTZ level of theory was used for the optimization of the systems. The aromaticity of the resulting electronic structures was evaluated with HOMA, NICS, FLU, PDI, Iring, and MCI aromaticity indices. Our results show that the shortest π-systems (one or two rings) have a singlet GS. However, systems with three to five rings favor OSS GSs. Electron-withdrawing groups (EWGs) and aromatic substituents in the exocyclic carbons tend to stabilize the OSS and T states, whereas electron-donating groups slightly destabilize them. For CS, OSS, and T states, aromaticity measures indicate a gain of aromaticity of the 6-membered rings of the CPHs with the increase in their size and when CPHs incorporate EWGs or aromatic substituents. In general, the CPHs analyzed present small singlet-triplet energy gaps, and in particular, the ones containing EWGs or aromatic substituents present the smallest singlet-triplet energy gaps.
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Affiliation(s)
- Sílvia Escayola
- Institut de Química
Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/Maria Aurèlia Capmany, 69, 17003 Girona, Catalonia, Spain
| | - Marc Callís
- Institut de Química
Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/Maria Aurèlia Capmany, 69, 17003 Girona, Catalonia, Spain
| | - Albert Poater
- Institut de Química
Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/Maria Aurèlia Capmany, 69, 17003 Girona, Catalonia, Spain
| | - Miquel Solà
- Institut de Química
Computacional i Catàlisi and Departament de Química, Universitat de Girona, C/Maria Aurèlia Capmany, 69, 17003 Girona, Catalonia, Spain
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Dey S, Manogaran D, Manogaran S, Schaefer HF. Substituent effects on the aromaticity of benzene-An approach based on interaction coordinates. J Chem Phys 2019; 150:214108. [PMID: 31176350 DOI: 10.1063/1.5090588] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Benzene and 23 monosubstituted and 32 disubstituted derivatives of benzene were optimized for minimum energy structures using the B3LYP/cc-pVTZ method. The force fields of all the compounds were evaluated at their optimized geometries using the same method and basis set. In order to understand the effect of substitution(s) on the aromaticity of benzene, the aromaticity index based on interaction coordinates (AIBIC) values were computed for each and the change from the benzene value was obtained. This difference, the substituent effect based on interaction coordinates (SEBIC), quantifies the effect of the substituent on the aromaticity of benzene ring satisfactorily. It is found that the AIBIC of disubstituted benzenes (XC6H4Y) could be predicted well by adding the respective SEBIC(C6H5X) and SEBIC(C6H5Y) values to the AIBIC of benzene. The projected force fields of the meta and para fragments of the monosubstituted benzenes when chosen properly contain the information about the directing influence of the substituent in terms of the electron density based on interaction coordinates (EDBIC). When the EDBIC(para) > EDBIC(meta) relative to benzene, the substituent is ortho-para directing, while when the reverse is true, it is meta directing. The effect of conformational changes on aromaticity has been studied using aminophenols and dihydroxybenzenes. The additivity rule and the EDBIC concept work adequately well in that the methods can have several useful practical applications that will benefit various areas of science. A good understanding of the substituent effects and the ability to predict them should add a new dimension to the applications of AIBIC.
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Affiliation(s)
- Soumyadeb Dey
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208 016, India
| | - Dhivya Manogaran
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208 016, India
| | - Sadasivam Manogaran
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208 016, India
| | - Henry F Schaefer
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
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Finkelstein P, Gershoni‐Poranne R. An Additivity Scheme for Aromaticity: The Heteroatom Case. Chemphyschem 2019; 20:1508-1520. [DOI: 10.1002/cphc.201900128] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2019] [Indexed: 11/06/2022]
Affiliation(s)
- Patrick Finkelstein
- Laboratorium für Organische ChemieETH Zurich Vladimir-Prelog-Weg 2 Zurich 8093 Switzerland
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