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Khuu T, Schleif T, Mohamed A, Mitra S, Johnson MA, Valdiviezo J, Heindel JP, Head-Gordon T. Intra-cluster Charge Migration upon Hydration of Protonated Formic Acid Revealed by Anharmonic Analysis of Cold Ion Vibrational Spectra. J Phys Chem A 2023; 127:7501-7509. [PMID: 37669457 DOI: 10.1021/acs.jpca.3c03971] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/07/2023]
Abstract
The rates of many chemical reactions are accelerated when carried out in micron-sized droplets, but the molecular origin of the rate acceleration remains unclear. One example is the condensation reaction of 1,2-diaminobenzene with formic acid to yield benzimidazole. The observed rate enhancements have been rationalized by invoking enhanced acidity at the surface of methanol solvent droplets with low water content to enable protonation of formic acid to generate a cationic species (protonated formic acid or PFA) formed by attachment of a proton to the neutral acid. Because PFA is the key feature in this reaction mechanism, vibrational spectra of cryogenically cooled, microhydrated PFA·(H2O)n=1-6 were acquired to determine how the extent of charge localization depends on the degree of hydration. Analysis of these highly anharmonic spectra with path integral ab initio molecular dynamics simulations reveals the gradual displacement of the excess proton onto the water network in the microhydration regime at low temperatures with n = 3 as the tipping point for intra-cluster proton transfer.
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Affiliation(s)
- Thien Khuu
- Sterling Chemistry Laboratory, Department of Chemistry, Yale University, New Haven, Connecticut 06511, United States
| | - Tim Schleif
- Sterling Chemistry Laboratory, Department of Chemistry, Yale University, New Haven, Connecticut 06511, United States
| | - Ahmed Mohamed
- Sterling Chemistry Laboratory, Department of Chemistry, Yale University, New Haven, Connecticut 06511, United States
| | - Sayoni Mitra
- Sterling Chemistry Laboratory, Department of Chemistry, Yale University, New Haven, Connecticut 06511, United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Department of Chemistry, Yale University, New Haven, Connecticut 06511, United States
| | - Jesús Valdiviezo
- Pitzer Theory Center, Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Joseph P Heindel
- Pitzer Theory Center, Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Teresa Head-Gordon
- Pitzer Theory Center, Department of Chemistry, University of California, Berkeley, California 94720, United States
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2
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Zane AR, Curotto E. Electrolyte clusters as hydrogen sponges: diffusion Monte Carlo simulations. Phys Chem Chem Phys 2022; 24:26094-26101. [PMID: 36268906 DOI: 10.1039/d2cp03658d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
We carry out Diffusion Monte Carlo simulations of up to five hydrogen molecules aggregated with two Stockmayer clusters that solvate a single lithium ion. The first one contains six point dipole solvent particles with parameters tuned to emulate nitromethane. The second cluster is a relative large system investigated recently [G. DiEmma, S. Kalette, and E. Curotto, Chem. Phys. Lett. 2019, 725, 80-86]. In both cases we find that the aggregated hydrogen molecules perturb significantly the ground state of the host cluster and form a distorted tetrahedral cage around the Li+ ion. The fifth hydrogen molecule is absorbed by the larger Stockmayer cluster while remaining in the proximity of the solvated charge.
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Affiliation(s)
- A R Zane
- Department of Chemistry & Physics Arcadia University, 450 S. Easton Rd., Glenside, PA 19038, USA.
| | - E Curotto
- Department of Chemistry & Physics Arcadia University, 450 S. Easton Rd., Glenside, PA 19038, USA.
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3
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Mitra S, Khuu T, Choi TH, Huchmala RM, Jordan KD, McCoy AB, Johnson MA. Vibrational Signatures of HNO 3 Acidity When Complexed with Microhydrated Alkali Metal Ions, M +·(HNO 3)(H 2O) n=5 (M = Li, K, Na, Rb, Cs), at 20 K. J Phys Chem A 2022; 126:1640-1647. [PMID: 35249322 DOI: 10.1021/acs.jpca.1c10352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The speciation of strong acids like HNO3 under conditions of restricted hydration is an important factor in the rates of chemical reactions at the air-water interface. Here, we explore the trade-offs at play when HNO3 is attached to alkali ions (Li+-Cs+) with four water molecules in their primary hydration shells. This is achieved by analyzing the vibrational spectra of the M+·(HNO3)(H2O)5 clusters cooled to about 20 K in a cryogenic photofragmentation mass spectrometer. The local acidity of the acidic OH group is estimated by the extent of the red shift in its stretching frequency when attached to a single water molecule. The persistence of this local structural motif (HNO3-H2O) in all of these alkali metal clusters enables us to determine the competition between the effect of the direct complexation of the acid with the cation, which acts to enhance acidity, and the role of the water network in the first hydration shell around the ions, which acts to counter (screen) the intrinsic effect of the ion. Analysis of the vibrational features associated with the acid molecule, as well as those of the water network, reveals how cooperative interactions in the microhydration regime conspire to effectively offset the intrinsic enhancement of HNO3 acidity afforded by attachment to the smaller cations.
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Affiliation(s)
- Sayoni Mitra
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Thien Khuu
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Tae Hoon Choi
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
| | - Rachel M Huchmala
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Kenneth D Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
| | - Anne B McCoy
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
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Marlton SJP, Trevitt A. Laser Photodissocation, Action Spectroscopy and Mass Spectrometry Unite to Detect and Separate Isomers. Chem Commun (Camb) 2022; 58:9451-9467. [DOI: 10.1039/d2cc02101c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The separation and detection of isomers remains a challenge for many areas of mass spectrometry. This article highlights laser photodissociation and ion mobility strategies that have been deployed to tackle...
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Edington SC, Perez EH, Charboneau DJ, Menges FS, Hazari N, Johnson MA. Chemical Reduction of Ni II Cyclam and Characterization of Isolated Ni I Cyclam with Cryogenic Vibrational Spectroscopy and Inert-Gas-Mediated High-Resolution Mass Spectrometry. J Phys Chem A 2021; 125:6715-6721. [PMID: 34324319 DOI: 10.1021/acs.jpca.1c05016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
NiII cyclam (cyclam = 1,4,8,11-tetraazacyclotetradecane) is an efficient catalyst for the selective reduction of CO2 to CO. A crucial elementary step in the proposed catalytic cycle is the coordination of CO2 to a NiI cyclam intermediate. Isolation and spectroscopic characterization of this labile NiI species without solvent has proven to be challenging, however, and only partial IR spectra have previously been reported using multiple photon fragmentation of ions generated by gas-phase electron transfer to the NiII cyclam dication at 300 K. Here, we report a chemical reduction method that efficiently prepares NiI cyclam in solution. This enables the NiI complex to be transferred into a cryogenic photofragmentation mass spectrometer using inert-gas-mediated electrospray ionization. The vibrational spectra of the 30 K ion using both H2 and N2 messenger tagging over the range 800-4000 cm-1 were then measured. The resulting spectra were analyzed with the aid of electronic structure calculations, which show strong method dependence in predicted band positions and small molecule activation. The conformational changes of the cyclam ligand induced by binding of the open shell NiI cation were compared with those caused by the spherical, closed-shell LiI cation, which has a similar ionic radius. We also report the vibrational spectrum of a NiI cyclam complex with a strongly bound O2 ligand. The cyclam ligand supporting this species exhibits a large conformational change compared to the complexes with weakly bound N2 and H2, which is likely due to significant charge transfer from Ni to the coordinated O2.
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Affiliation(s)
- Sean C Edington
- Sterling Chemistry Laboratory, Chemistry Department, Yale University, New Haven, Connecticut 06520, United States
| | - Evan H Perez
- Sterling Chemistry Laboratory, Chemistry Department, Yale University, New Haven, Connecticut 06520, United States
| | - David J Charboneau
- Sterling Chemistry Laboratory, Chemistry Department, Yale University, New Haven, Connecticut 06520, United States
| | - Fabian S Menges
- Sterling Chemistry Laboratory, Chemistry Department, Yale University, New Haven, Connecticut 06520, United States
| | - Nilay Hazari
- Sterling Chemistry Laboratory, Chemistry Department, Yale University, New Haven, Connecticut 06520, United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Chemistry Department, Yale University, New Haven, Connecticut 06520, United States
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Chakraborty A, Schmahl S, Asmis KR. Isomer-Specific Vibrational Spectroscopy of Microhydrated Lithium Dichloride Anions: Spectral Fingerprint of Solvent-Shared Ion Pairs. Chemphyschem 2021; 22:1036-1041. [PMID: 33783947 PMCID: PMC8252531 DOI: 10.1002/cphc.202100170] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Revised: 03/28/2021] [Indexed: 12/21/2022]
Abstract
The vibrational spectroscopy of lithium dichloride anions microhydrated with one to three water molecules, [LiCl2 (H2 O)1-3 ]- , is studied in the OH stretching region (3800-2800 cm-1 ) using isomer-specific IR/IR double-resonance population labelling experiments. The spectroscopic fingerprints of individual isomers can only be unambiguously assigned after anharmonic effects are considered, but then yield molecular level insight into the onset of salt dissolution in these gas phase model systems. Based on the extent of the observed frequency shifts ΔνOH of the hydrogen-bonded OH stretching oscillators solvent-shared ion pair motifs (<3200 cm-1 ) can be distinguished from intact-core structures (>3200 cm-1 ). The characteristic fingerprint of a water molecule trapped directly in-between two ions of opposite charge provides an alternative route to evaluate the extent of ion pairing in aqueous electrolyte solutions.
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Affiliation(s)
- Arghya Chakraborty
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, Linnéstrasse 2, D-04103, Leipzig, Germany
| | - Sonja Schmahl
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, Linnéstrasse 2, D-04103, Leipzig, Germany
| | - Knut R Asmis
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, Linnéstrasse 2, D-04103, Leipzig, Germany
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Mitra S, Yang N, McCaslin LM, Gerber RB, Johnson MA. Size-Dependent Onset of Nitric Acid Dissociation in Cs +·(HNO 3)(H 2O) n=0-11 Clusters at 20 K. J Phys Chem Lett 2021; 12:3335-3342. [PMID: 33779169 DOI: 10.1021/acs.jpclett.1c00235] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
We report the water-mediated charge separation of nitric acid upon incorporation into size-selected Cs+·(HNO3)(H2O)n=0-11 clusters at 20 K. Dramatic spectral changes are observed in the n = 7-9 range that are traced to the formation of many isomeric structures associated with intermediate transfer of the acidic proton to the water network. This transfer is complete by n = 10, which exhibits much simpler vibrational band patterns consistent with those expected for a tricoordinated hydronium ion (the Eigen motif) along with the NO stretching bands predicted for a hydrated NO3- anion that is directly complexed to the Cs+ cation. Theoretical analysis of the n = 10 spectrum indicates that the dissociated ions adopt a solvent-separated ion-pair configuration such that the Cs+ and H3O+ cations flank the NO3- anion in a microhydrated salt bridge. This charge separation motif is evidently assisted by the electrostatic stabilization of the product NO3-/H3O+ ion pair by the proximal metal ion.
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Affiliation(s)
- Sayoni Mitra
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06511, United States
| | - Nan Yang
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06511, United States
| | - Laura M McCaslin
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94550, United States
| | - R Benny Gerber
- Institute of Chemistry and the Fritz-Haber Center for Molecular Dynamics, The Hebrew University, Jerusalem, Israel
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06511, United States
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Saparbaev E, Aladinskaia V, Zviagin A, Boyarkin OV. Microhydration of Biomolecules: Revealing the Native Structures by Cold Ion IR Spectroscopy. J Phys Chem Lett 2021; 12:907-911. [PMID: 33439655 DOI: 10.1021/acs.jpclett.0c03678] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The native-like structures of protonated glycine and peptide Gly3H+ were elucidated using cold ion IR spectroscopy of these biomolecules hydrated by a controlled number of water molecules. The complexes were generated directly from an aqueous solution using gentle electrospray ionization. Already with a single retained water molecule, GlyH+ exhibits the native-like structure characterized by a lack of intramolecular hydrogen bonds. We use our spectra to calibrate the available data for the same complexes, which are produced by cryogenic condensation of water onto the gas-phase glycine. In some conformers of these complexes, GlyH+ adopts the native-like structure, while in the others, it remains "kinetically" trapped in the intrinsic state. Upon condensation of 4-5 water molecules, the embedded amino acid fully adopts its native-like structure. Similarly, condensation of one water molecule onto the tripeptide is insufficient to fully eliminate its kinetically trapped intrinsic states.
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Affiliation(s)
- Erik Saparbaev
- Laboratoire de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, Station-6, 1015 Lausanne, Switzerland
| | - Viktoriia Aladinskaia
- Laboratoire de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, Station-6, 1015 Lausanne, Switzerland
| | - Andrei Zviagin
- Laboratoire de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, Station-6, 1015 Lausanne, Switzerland
| | - Oleg V Boyarkin
- Laboratoire de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, Station-6, 1015 Lausanne, Switzerland
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Zeng HJ, Khuu T, Chambreau SD, Boatz JA, Vaghjiani GL, Johnson MA. Ionic Liquid Clusters Generated from Electrospray Thrusters: Cold Ion Spectroscopic Signatures of Size-Dependent Acid-Base Interactions. J Phys Chem A 2020; 124:10507-10516. [PMID: 33284621 DOI: 10.1021/acs.jpca.0c07595] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
We determine the intramolecular distortions at play in the 2-hydroxyethylhydrazinium nitrate (HEHN) ionic liquid (IL) propellant, which presents the interesting case that the HEH+ cation has multiple sites (i.e., hydroxy, primary amine, and secondary ammonium groups) available for H-bonding with the nitrate anion. These interactions are quantified by analyzing the vibrational band patterns displayed by cold cationic clusters, (HEH+)n(NO3-)n-1, n = 2-6, which are obtained using IR photodissociation of the cryogenically cooled, mass-selected ions. The strong interaction involving partial proton transfer of the acidic N-H proton in HEH+ cation to the nitrate anion is strongly enhanced in the ternary n = 2 cluster but is suppressed with increasing cluster size. The cluster spectra recover the bands displayed by the bulk liquid by n = 5, thus establishing the minimum domain required to capture this aspect of macroscopic behavior.
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Affiliation(s)
- Helen J Zeng
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Thien Khuu
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Steven D Chambreau
- Jacobs Technology, Inc., Air Force Research Laboratory, AFRL/RQRP, Edwards Air Force Base, California 93524, United States
| | - Jerry A Boatz
- Propellants Branch, Rocket Propulsion Division, Aerospace Systems Directorate, Air Force Research Laboratory, AFRL/RQRP, Edwards Air Force Base, California 93524, United States
| | - Ghanshyam L Vaghjiani
- In-Space Propulsion Branch, Rocket Propulsion Division, Aerospace Systems Directorate, Air Force Research Laboratory, AFRL/RQRP, Edwards Air Force Base, California 93524, United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
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