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Alvim T, Telo da Gama MM, Coelho RCV. Solute dispersion in pre-turbulent confined active nematics. SOFT MATTER 2025; 21:2569-2577. [PMID: 39964286 DOI: 10.1039/d4sm01175a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/03/2025]
Abstract
We investigate the dispersion of solutes in active nematic fluids confined to narrow channels based on simulations of nematohydrodynamics. The study focuses on two pre-turbulent regimes: oscillatory flow, with net mass flux, and dancing flow, without net flux. Non-diffusive tracers exhibit markedly different behaviors in oscillatory and dancing flows. By contrast, the hydrodynamic dispersion of solutes driven by active flows, both in the oscillatory and dancing flows, are similar and can be described by an extension of the Taylor-Aris law. This study contributes to our understanding of micromixing in active flows both in nature and in applications.
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Affiliation(s)
- Tomás Alvim
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal.
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, P-1749-016 Lisboa, Portugal
| | - Margarida M Telo da Gama
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal.
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, P-1749-016 Lisboa, Portugal
| | - Rodrigo C V Coelho
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal.
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, P-1749-016 Lisboa, Portugal
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2
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Schimming CD, Reichhardt CJO, Reichhardt C. Turbulence-to-order transitions in activity-patterned active nematics. Phys Rev E 2025; 111:035404. [PMID: 40247521 DOI: 10.1103/physreve.111.035404] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2024] [Accepted: 02/25/2025] [Indexed: 04/19/2025]
Abstract
We numerically study two-dimensional active nematics with periodic activity patterning. For stripes of activity, we observe a transition from two-dimensional to one-dimensional active turbulence as the maximum active force and distance between activity stripes increases, followed by a transition to stable vortices ordered antiferromagnetically along the stripes and ferromagnetically transverse to the stripes. By comparing to a triangular lattice of activity circles, we find that transitions to two-dimensional active turbulence emerge from interplays between the active length scale and activity density, independent of the patterning geometry. The vortex ordering, however, is highly sensitive to patterning geometry, which we show by comparing the activity stripes to columns of activity circles, where the vortex ordering is lost. Our results provide a mechanism for inducing nonequilibrium phase transitions in active nematics using activity inhomogeneity, which can be further exploited to create activity patterned ordered phases.
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Affiliation(s)
- Cody D Schimming
- Johns Hopkins University, Department of Physics and Astronomy, Baltimore, Maryland 21218, USA
- Los Alamos National Laboratory, Theoretical Division and Center for Nonlinear Studies, Los Alamos, New Mexico 87545, USA
| | - C J O Reichhardt
- Los Alamos National Laboratory, Theoretical Division and Center for Nonlinear Studies, Los Alamos, New Mexico 87545, USA
| | - C Reichhardt
- Los Alamos National Laboratory, Theoretical Division and Center for Nonlinear Studies, Los Alamos, New Mexico 87545, USA
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3
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Ardaševa A, Vélez-Cerón I, Pedersen MC, Ignés-Mullol J, Sagués F, Doostmohammadi A. Beyond Dipolar Activity: Quadrupolar Stress Drives Collapse of Nematic Order on Frictional Substrates. PHYSICAL REVIEW LETTERS 2025; 134:088301. [PMID: 40085853 DOI: 10.1103/physrevlett.134.088301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Revised: 12/04/2024] [Accepted: 01/28/2025] [Indexed: 03/16/2025]
Abstract
The field of active nematics has traditionally employed descriptions based on dipolar activity. However, it is theoretically predicted that interactions with a substrate, prevalent in most biological systems, lead to novel forms of activity, such as quadrupolar activity, that are governed by hydrodynamic screening. Here, combining experiments and numerical simulations, we show that upon light-induced solidification of the underlying medium, microtubule-kinesin mixtures undergo a transformation that leads to a biphasic active suspension. Using an active lyotropic model, we prove that the transition is governed by screening effects that alter the dominant form of active stress. Specifically, the combined effect of friction and quadrupolar activity leads to a hierarchical folding that follows the intrinsic bend instability of the active nematic layer. Our results demonstrate the dynamics of the collapse of orientational order in active nematics and present a new route for controlling active matter by modifying the activity through changing the surrounding environment.
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Affiliation(s)
- Aleksandra Ardaševa
- Niels Bohr Institute, University of Copenhagen, Blegdamsvej 17, Copenhagen, Denmark
| | - Ignasi Vélez-Cerón
- Universitat de Barcelona, Department of Materials Science and Physical Chemistry, Barcelona 08028, Spain
- Universitat de Barcelona, Institute of Nanoscience and Nanotechnology, IN2UB, Barcelona 08028, Spain
| | | | - Jordi Ignés-Mullol
- Universitat de Barcelona, Department of Materials Science and Physical Chemistry, Barcelona 08028, Spain
- Universitat de Barcelona, Institute of Nanoscience and Nanotechnology, IN2UB, Barcelona 08028, Spain
| | - Francesc Sagués
- Universitat de Barcelona, Department of Materials Science and Physical Chemistry, Barcelona 08028, Spain
- Universitat de Barcelona, Institute of Nanoscience and Nanotechnology, IN2UB, Barcelona 08028, Spain
| | - Amin Doostmohammadi
- Niels Bohr Institute, University of Copenhagen, Blegdamsvej 17, Copenhagen, Denmark
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Wang W, Ren H, Zhang R. Symmetry Breaking of Self-Propelled Topological Defects in Thin-Film Active Chiral Nematics. PHYSICAL REVIEW LETTERS 2024; 132:038301. [PMID: 38307071 DOI: 10.1103/physrevlett.132.038301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2023] [Revised: 10/09/2023] [Accepted: 11/28/2023] [Indexed: 02/04/2024]
Abstract
Active nematics represent a range of dense active matter systems which can engender spontaneous flows and self-propelled topological defects. Two-dimensional (2D) active nematic theory and simulation have been successful in explaining many quasi-2D experiments in which self-propelled +1/2 defects are observed to move along their symmetry axis. However, many active liquid crystals are essentially chiral nematic, but their twist mode becomes irrelevant under the 2D assumption. Here, we use theory and simulation to examine a three-dimensional active chiral nematic confined to a thin film, thus forming a quasi-2D system. We predict that the self-propelled +1/2 disclination in a curved thin film can break its mirror symmetry by moving circularly. Our prediction is confirmed by hydrodynamic simulations of thin spherical-shell and thin cylindrical-shell systems. In the spherical-shell confinement, the four emerged +1/2 disclinations exhibit rich dynamics as a function of activity and chirality. As such, we have proposed a new symmetry-breaking scenario in which self-propelled defects in quasi-2D active nematics can acquire an active angular velocity, greatly enriching their dynamics for finer control and emerging applications.
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Affiliation(s)
- Weiqiang Wang
- Department of Physics, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong SAR
| | - Haijie Ren
- Department of Physics, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong SAR
| | - Rui Zhang
- Department of Physics, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong SAR
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5
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Kinoshita Y, Uchida N. Flow patterns and defect dynamics of active nematic liquid crystals under an electric field. Phys Rev E 2023; 108:014605. [PMID: 37583184 DOI: 10.1103/physreve.108.014605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 06/19/2023] [Indexed: 08/17/2023]
Abstract
The effects of an electric field on the flow patterns and defect dynamics of two-dimensional active nematic liquid crystals are numerically investigated. We found that field-induced director reorientation causes anisotropic active turbulence characterized by enhanced flow perpendicular to the electric field. The average flow speed and its anisotropy are maximized at an intermediate field strength. Topological defects in the anisotropic active turbulence are localized and show characteristic dynamics with simultaneous creation of two pairs of defects. A laning state characterized by stripe domains with alternating flow directions is found at a larger field strength near the transition to the uniformly aligned state. We obtained periodic oscillations between the laning state and active turbulence, which resembles an experimental observation of active nematics subject to anisotropic friction.
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Affiliation(s)
- Yutaka Kinoshita
- Department of Physics, Tohoku University, Sendai 980-8578, Japan
| | - Nariya Uchida
- Department of Physics, Tohoku University, Sendai 980-8578, Japan
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Coelho RCV, Araújo NAM, Telo da Gama MM. Dispersion of activity at an active-passive nematic interface. SOFT MATTER 2022; 18:7642-7653. [PMID: 36169262 DOI: 10.1039/d2sm00988a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Efficient nutrient mixing is crucial for the survival of bacterial colonies and other living systems known as active nematics. However, the dynamics of this mixing is non-trivial as there is a coupling between nutrients concentration and velocity field. To address this question, we solve the hydrodynamic equation for active nematics to model the bacterial swarms coupled to an advection-diffusion equation for the activity field, which is proportional to the concentration of nutrients. At the interface between active and passive nematics the activity field is transported by the interfacial flows and in turn it modifies them through the generation of active stresses. We find that the dispersion of this conserved activity field is subdiffusive due to the emergence of a barrier of negative defects at the active-passive interface, which hinders the propagation of the motile positive defects.
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Affiliation(s)
- Rodrigo C V Coelho
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, P-1749-016 Lisboa, Portugal.
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, P-1749-016 Lisboa, Portugal
| | - Nuno A M Araújo
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, P-1749-016 Lisboa, Portugal.
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, P-1749-016 Lisboa, Portugal
| | - Margarida M Telo da Gama
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, P-1749-016 Lisboa, Portugal.
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, P-1749-016 Lisboa, Portugal
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Thampi SP. Channel Confined Active Nematics. Curr Opin Colloid Interface Sci 2022. [DOI: 10.1016/j.cocis.2022.101613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Coelho RCV, Araújo NAM, Telo da Gama MM. Director alignment at the nematic-isotropic interface: elastic anisotropy and active anchoring. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2021; 379:20200394. [PMID: 34455836 DOI: 10.1098/rsta.2020.0394] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 04/13/2021] [Indexed: 06/13/2023]
Abstract
Activity in nematics drives interfacial flows that lead to preferential alignment that is tangential or planar for extensile systems (pushers) and perpendicular or homeotropic for contractile ones (pullers). This alignment is known as active anchoring and has been reported for a number of systems and described using active nematic hydrodynamic theories. The latter are based on the one-elastic constant approximation, i.e. they assume elastic isotropy of the underlying passive nematic. Real nematics, however, have different elastic constants, which lead to interfacial anchoring. In this paper, we consider elastic anisotropy in multiphase and multicomponent hydrodynamic models of active nematics and investigate the competition between the interfacial alignment driven by the elastic anisotropy of the passive nematic and the active anchoring. We start by considering systems with translational invariance to analyse the alignment at flat interfaces and, then, consider two-dimensional systems and active nematic droplets. We investigate the competition of the two types of anchoring over a wide range of the other parameters that characterize the system. The results of the simulations reveal that the active anchoring dominates except at very low activities, when the interfaces are static. In addition, we found that the elastic anisotropy does not affect the dynamics but changes the active length that becomes anisotropic. This article is part of the theme issue 'Progress in mesoscale methods for fluid dynamics simulation'.
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Affiliation(s)
- Rodrigo C V Coelho
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal
| | - Nuno A M Araújo
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal
| | - Margarida M Telo da Gama
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal
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Coelho RCV, Araújo NAM, Telo da Gama MM. Propagation of active nematic-isotropic interfaces on substrates. SOFT MATTER 2020; 16:4256-4266. [PMID: 32301453 DOI: 10.1039/c9sm02306b] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Motivated by results for the propagation of active-passive interfaces of bacterial Serratia marcescens swarms [Nat. Commun., 2018, 9, 5373], we used a hydrodynamic multiphase model to investigate the propagation of interfaces of active nematics on substrates. We characterized the active nematic phase of the model through the calculation of the spatial and temporal auto correlation functions and the energy spectrum and discussed its description of the statistical dynamics of the swarms reported in the experiment. We then studied the propagation of circular and flat active-passive interfaces. We found that the closing time of the circular passive domain decays quadratically with the activity and that the structure factor of the flat interface is similar to that reported for the swarms, with an activity dependent exponent. Finally, the effect of the substrate friction was investigated. We found an activity dependent threshold, above which the turbulent active nematic forms isolated islands that shrink until the system becomes isotropic and below which the active nematic expands, with a well defined propagating interface. We also found that the interface becomes static in the presence of a friction gradient.
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Affiliation(s)
- Rodrigo C V Coelho
- Centro de Física Teórica e Computacional, Universidade de Lisboa, 1749-016 Lisboa, Portugal.
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Coelho RC, Araújo NAM, Telo da Gama MM. Lattice-Boltzmann simulation of free nematic-isotropic interfaces. EPJ WEB OF CONFERENCES 2020. [DOI: 10.1051/epjconf/202023302001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
We use a hybrid method of lattice Boltzmann and finite differences to simulate flat and curved interfaces between the nematic and isotropic phases of a liquid crystal described by the Landau-de Gennes theory. For the flat in¬terface, we measure the interfacial velocity at different temperatures around the coexistence. We show that the interface is completely static at the coexistence temperature and that the profile width is in line with the theoretical predictions. The interface is stable in a range of temperatures around coexistence and dis¬appears when one of the two phases becomes mechanically unstable. We stabi¬lize circular nematic domains by a shift in temperature, related to the Laplace pressure, and estimate the spurious velocities of these lattice Boltzmann simu¬lations.
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