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Song Z, Shao X, Wu W, Liu Z, Yang M, Liu M, Wang H. Structures and Stabilities of Carbon Chain Clusters Influenced by Atomic Antimony. Molecules 2023; 28:molecules28031358. [PMID: 36771025 PMCID: PMC9921706 DOI: 10.3390/molecules28031358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 01/18/2023] [Accepted: 01/21/2023] [Indexed: 02/04/2023] Open
Abstract
The C-C bond lengths of the linear magnetic neutral CnSb, CnSb+ cations and CnSb- anions are within 1.255-1.336 Å, which is typical for cumulene structures with moderately strong double-bonds. In this report, we found that the adiabatic ionization energy (IE) of CnSb decreased with n. When comparing the IE~n relationship of CnSb with that of pure Cn, we found that the latter exhibited a stair-step pattern (n ≥ 6), but the IE~n relationship of CnSb chains took the shape of a flat curve. The IEs of CnSb were lower than those of corresponding pure carbon chains. Different from pure carbon chains, the adiabatic electron affinity of CnSb does not exhibit a parity effect. There is an even-odd alternation for the incremental binding energies of the open chain CnSb (for n = 1-16) and CnSb+ (n = 1-10, when n > 10, the incremental binding energies of odd (n) chain of CnSb+ are larger than adjacent clusters). The difference in the incremental binding energies between the even and odd chains of both CnSb and pure Cn diminishes with the increase in n. The incremental binding energies for CnSb- anions do not exhibit a parity effect. For carbon chain clusters, the most favorable binding site of atomic antimony is the terminal carbon of the carbon cluster because the terminal carbon with a large spin density bonds in an unsaturated way. The C-Sb bond is a double bond with Wiberg bond index (WBI) between 1.41 and 2.13, which is obviously stronger for a carbon chain cluster with odd-number carbon atoms. The WBI of all C-C bonds was determined to be between 1.63 and 2.01, indicating the cumulene character of the carbon chain. Generally, the alteration of WBI and, in particular, the carbon chain cluster is consistent with the bond length alteration. However, the shorter C-C distance did not indicate a larger WBI. Rather than relying on the empirical comparison of bond distance, the WBI is a meaningful quantitative indicator for predicting the bonding strength in the carbon chain.
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Affiliation(s)
- Zhenjun Song
- School of Pharmaceutical and Chemical Engineering, Taizhou University, Taizhou 318000, China
- Department of Chemistry, Tongji University, Shanghai 200092, China
| | - Xiji Shao
- School of Intelligent Engineering, Shaoguan University, Shaoguan 512005, China
| | - Wei Wu
- Department of Physics and Astronomy, London Centre for Nanotechnology, University College London, London WC1E 6BT, UK
| | - Zhenzhong Liu
- Research Institute of Zhejiang University-Taizhou, Zhejiang University, Taizhou 318000, China
| | - Meiding Yang
- School of Pharmaceutical and Chemical Engineering, Taizhou University, Taizhou 318000, China
- Correspondence: (M.Y.); (M.L.); (H.W.)
| | - Mingyue Liu
- School of Pharmaceutical and Chemical Engineering, Taizhou University, Taizhou 318000, China
- Correspondence: (M.Y.); (M.L.); (H.W.)
| | - Hai Wang
- Key Laboratory of Yunnan Provincial Higher Education Institutions for Organic Optoelectronic Materials and Devices, Kunming University, Kunming 650214, China
- Yunnan Key Laboratory of Metal-Organic Molecular Materials and Devices, Kunming University, Kunming 650091, China
- Correspondence: (M.Y.); (M.L.); (H.W.)
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The Binary-Encounter-Bethe Model for Computation of Singly Differential Cross Sections Due to Electron-Impact Ionization. ATOMS 2022. [DOI: 10.3390/atoms10020060] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
In the present work, we assess the effectiveness of singly differential cross sections (SDCS) due to electron-impact ionization by invoking the binary-encounter-Bethe (BEB) model on various atomic and molecular targets. The computed results were compared with the experimental and theoretical data. A good agreement was observed between the present and the available results. This agreement improves as the incident energy of the projectile increases. The model can be applied to compute the SDCS for the ions produced due to the electron-impact dissociative ionization process and the average energy due to the secondary electrons. Both these quantities are of interest in plasma processing and radiation physics.
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Barnum TJ, Siebert MA, Lee KLK, Loomis RA, Changala PB, Charnley SB, Sita ML, Xue C, Remijan AJ, Burkhardt AM, McGuire BA, Cooke IR. A Search for Heterocycles in GOTHAM Observations of TMC-1. J Phys Chem A 2022; 126:2716-2728. [PMID: 35442689 DOI: 10.1021/acs.jpca.2c01435] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We have conducted an extensive search for nitrogen-, oxygen-, and sulfur-bearing heterocycles toward Taurus Molecular Cloud 1 (TMC-1) using the deep, broadband centimeter-wavelength spectral line survey of the region from the GOTHAM large project on the Green Bank Telescope. Despite their ubiquity in terrestrial chemistry, and the confirmed presence of a number of cyclic and polycyclic hydrocarbon species in the source, we find no evidence for the presence of any heterocyclic species. Here, we report the derived upper limits on the column densities of these molecules obtained by Markov Chain Monte Carlo (MCMC) analysis and compare this approach to traditional single-line upper limit measurements. We further hypothesize why these molecules are absent in our data, how they might form in interstellar space, and the nature of observations that would be needed to secure their detection.
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Affiliation(s)
- Timothy J Barnum
- Department of Chemistry, Union College, Schenectady, New York 12308, United States
| | - Mark A Siebert
- Department of Astronomy, University of Virginia, Charlottesville, Virginia 22904, United States
| | - Kin Long Kelvin Lee
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Ryan A Loomis
- National Radio Astronomy Observatory, Charlottesville, Virginia 22903, United States
| | - P Bryan Changala
- Center for Astrophysics
- Harvard & Smithsonian, Cambridge, Massachusetts 02138, United States
| | - Steven B Charnley
- Astrochemistry Laboratory and the Goddard Center for Astrobiology, NASA Goddard Space Flight Center, Greenbelt, Maryland 20771, United States
| | - Madelyn L Sita
- Department of Chemistry, University of Virginia, Charlottesville, Virginia 22904, United States
| | - Ci Xue
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Anthony J Remijan
- National Radio Astronomy Observatory, Charlottesville, Virginia 22903, United States
| | - Andrew M Burkhardt
- Department of Physics, Wellesley College, 106 Central Street, Wellesley, Massachusetts 02481, United States
| | - Brett A McGuire
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.,National Radio Astronomy Observatory, Charlottesville, Virginia 22903, United States.,Center for Astrophysics
- Harvard & Smithsonian, Cambridge, Massachusetts 02138, United States
| | - Ilsa R Cooke
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada
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Zamir A, Stein T. Isomerization of hydrogen cyanide and hydrogen isocyanide in a cluster environment: quantum chemical study. J Chem Phys 2022; 156:054307. [DOI: 10.1063/5.0077000] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Affiliation(s)
- Alon Zamir
- Fritz Haber Research Center for Molecular Dynamics, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel
| | - Tamar Stein
- Fritz Haber Research Center for Molecular Dynamics, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel
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The Effect of Cluster Size on the Intra-Cluster Ionic Polymerization Process. Molecules 2021; 26:molecules26164782. [PMID: 34443370 PMCID: PMC8399435 DOI: 10.3390/molecules26164782] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Revised: 08/02/2021] [Accepted: 08/04/2021] [Indexed: 11/17/2022] Open
Abstract
Polyaromatic hydrocarbons (PAHs) are widespread in the interstellar medium (ISM). The abundance and relevance of PAHs call for a clear understanding of their formation mechanisms, which, to date, have not been completely deciphered. Of particular interest is the formation of benzene, the basic building block of PAHs. It has been shown that the ionization of neutral clusters can lead to an intra-cluster ionic polymerization process that results in molecular growth. Ab-initio molecular dynamics (AIMD) studies in clusters consisting of 3-6 units of acetylene modeling ionization events under ISM conditions have shown maximum aggregation of three acetylene molecules forming bonded C6H6+ species; the larger the number of acetylene molecules, the higher the production of C6H6+. These results lead to the question of whether clusters larger than those studied thus far promote aggregation beyond three acetylene units and whether larger clusters can result in higher C6H6+ production. In this study, we report results from AIMD simulations modeling the ionization of 10 and 20 acetylene clusters. The simulations show aggregation of up to four acetylene units producing bonded C8H8+. Interestingly, C8H8+ bicyclic species were identified, setting a precedent for their astrochemical identification. Comparable reactivity rates were shown with 10 and 20 acetylene clusters.
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Molecular dynamics reveals formation path of benzonitrile and other molecules in conditions relevant to the interstellar medium. Proc Natl Acad Sci U S A 2021; 118:2101371118. [PMID: 33941678 DOI: 10.1073/pnas.2101371118] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
Polycyclic aromatic hydrocarbons and polycyclic aromatic nitrogen heterocycles are believed to be widespread in different areas of the interstellar medium. However, the astronomical detection of specific aromatic molecules is extremely challenging. As a result, only a few aromatic molecules have been identified, and very little is known about how they are formed in different areas of the interstellar medium. Recently, McGuire et al. [Science 359, 202-205 (2018)] detected the simple aromatic molecule benzonitrile in Taurus Molecular Cloud-1. Although benzonitrile has been observed, the molecular mechanism for its formation is still unknown. In this study, we use quantum chemistry and ab initio molecular dynamics to model ionization processes of van der Waals clusters containing cyanoacetylene and acetylene molecules. We demonstrate computationally that the clusters' ionization leads to molecular formation. For pure cyanoacetylene clusters, we observe bond formation among two and three monomer units, whereas in mixed clusters, bond formation can also occur in up to four units. We show that the large amount of energy available to the system after ionization can lead to barrier crossing and the formation of complex molecules. Our study reveals the rich chemistry that is observed upon ionization of the clusters, with a wide variety of molecules being formed. Benzonitrile is among the observed molecules, and we study the potential energy path for its formation. These results also offer insights that can guide astronomers in their search for aromatic molecules in the interstellar medium.
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Wang Y, Wang E, Zhou J, Dorn A, Ren X. Formation of covalently bound C 4H 4 + upon electron-impact ionization of acetylene dimer. J Chem Phys 2021; 154:144301. [PMID: 33858144 DOI: 10.1063/5.0045531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We investigate the formation mechanisms of covalently bound C4H4 + cations from direct ionization of hydrogen bonded dimers of acetylene molecules through fragment ion and electron coincident momentum spectroscopy and quantum chemistry calculations. The measurements of momenta and energies of two outgoing electrons and one ion in triple-coincidence allow us to assign the ionization channels associated with different ionic fragments. The measured binding energy spectra show that the formation of C4H4 + can be attributed to the ionization of the outermost 1πu orbital of acetylene. The kinetic energy distributions of the ionic fragments indicate that the C4H4 + ions originate from direct ionization of acetylene dimers while ions resulting from the fragmentation of larger clusters would obtain significantly larger momenta. The formation of C4H4 + through the evaporation mechanism in larger clusters is not identified in the present experiments. The calculated potential energy curves show a potential well for the electronic ground state of (C2H2)2+, supporting that the ionization of (C2H2)2 dimers can form stable C2H2⋅C2H2 +(1πu -1) cations. Further transition state analysis and ab initio molecular dynamics simulations reveal a detailed picture of the formation dynamics. After ionization of (C2H2)2, the system undergoes a significant rearrangement of the structure involving, in particular, C-C bond formation and hydrogen migrations, leading to different C44+ isomers.
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Affiliation(s)
- Yingying Wang
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Enliang Wang
- Max-Planck-Institut für Kernphysik, 69117 Heidelberg, Germany
| | - Jiaqi Zhou
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Alexander Dorn
- Max-Planck-Institut für Kernphysik, 69117 Heidelberg, Germany
| | - Xueguang Ren
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
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