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Gupta A, Saulanki P, Bharatam PV. Neutral Cyclic Nitreones: Electronic Structure Analysis Reveals an Unorthodox Perspective of Several Zwitterionic Heterocyclic Species. J Phys Chem A 2025; 129:2854-2865. [PMID: 40065583 DOI: 10.1021/acs.jpca.4c08235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2025]
Abstract
Nitreones are compounds with the general formula L → N+ ← L'. These compounds exhibit medicinal properties and have found applications in phase transfer catalysis. A few nitreones are cyclic; protonated cycloguanil (an antimalarial agent) is the most prominent example. Recently, a few more cyclic compounds were experimentally reported, in which the central N+ was shown to exhibit nitreone character. This led to attention being paid to the chemistry of neutral cyclic nitreones. A thorough literature search led to two sets of cyclic nitreones: C → N ← C type and P → N ← P type. In this work, we report quantum chemical analysis in exploring the electronic structure of neutral cyclic nitreones. Molecular orbital analysis, electron density analysis, charge, electron localization function (ELF), complexation energy values, and Tolman electronic parameter (TEP) all indicate that the studied compounds do carry nitrogen in the N(I) oxidation state and the two lone pairs are at the central nitrogen; thus, they qualify to be considered as cyclic nitreones.
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Affiliation(s)
- Astha Gupta
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Sector 67, S.A.S. Nagar, Mohali 160062 Punjab, India
| | - Pooja Saulanki
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Sector 67, S.A.S. Nagar, Mohali 160062 Punjab, India
| | - Prasad V Bharatam
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Sector 67, S.A.S. Nagar, Mohali 160062 Punjab, India
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Mukhopadhyay J, Sahoo SC, Bharatam PV. (Imidazol-2-ylidene) → S coordination interactions and its modulation upon S-oxidation. Dalton Trans 2024; 53:17050-17058. [PMID: 39356278 DOI: 10.1039/d4dt02286f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/03/2024]
Abstract
(NHC) → E coordination interactions are being explored in many chemical species, including carbones and nitreones. (NHC) → S interactions are rare, but increasing attention is being paid to the compounds containing such interactions. The electron deficiency at the S centre is responsible for triggering electron donation from the NHC unit in (NHC) → SR(+) systems. It is well known that the positive charge at the sulfur centre increases upon single oxidation and further increases upon double oxidation. This implies that (NHC) → S interactions may become explicit after S-oxidation in the (NHC) → SR(+) systems. To explore this hypothesis, we performed quantum chemical design and synthesis of (NHC) → SR(+), (NHC) → S(O)R(+), and (NHC) → S(O)2R(+) complexes in which the ligands are imidazol-2-ylidene derivatives. Eight derivatives of the (imidazol-2-ylidene) → SR(+) systems were generated, and their sulfoxide and sulfone derivatives were obtained by oxidation using urea-H2O2 and mCPBA, respectively. The crystal structures of three compounds belonging to a series were determined. A comparison of the geometric, energetic and electronic characteristics confirmed the hypothesis that the (NHC) → S coordination interaction becomes comparatively stronger with an increase in oxygen atoms at the sulfur centre.
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Affiliation(s)
- Joy Mukhopadhyay
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), Sector 67, S. A. S. Nagar, Punjab 160062, India.
| | - Subash C Sahoo
- Department of Chemistry, Panjab University, Sector 14, Chandigarh, 160014, India
| | - Prasad V Bharatam
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), Sector 67, S. A. S. Nagar, Punjab 160062, India.
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3
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Obi AD, Deng CL, Alexis AJ, Dickie DA, Gilliard RJ. Geminal bimetallic coordination of a carbone to main-group and transition metals. Chem Commun (Camb) 2024. [PMID: 38284335 DOI: 10.1039/d3cc06226k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2024]
Abstract
The non-bonding carbone lone pair in geometrically-constrained antimony and bismuth carbodiphosphorane complexes readily complexed AuCl to afford rare examples of geminal bimetallic carbone coordination featuring a main-group metal.
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Affiliation(s)
- Akachukwu D Obi
- Department of Chemistry, University of Virginia, 409 McCormick Road, PO Box 400319, Charlottesville, Virginia, 22904, USA
| | - Chun-Lin Deng
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Building 18-596, Cambridge, MA 02139-4307, USA.
| | - Andrew J Alexis
- Department of Chemistry, University of Virginia, 409 McCormick Road, PO Box 400319, Charlottesville, Virginia, 22904, USA
| | - Diane A Dickie
- Department of Chemistry, University of Virginia, 409 McCormick Road, PO Box 400319, Charlottesville, Virginia, 22904, USA
| | - Robert J Gilliard
- Department of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Building 18-596, Cambridge, MA 02139-4307, USA.
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Leach IF, Speelman T, Somsen C, Klein JEMN, Havenith RWA. Revisiting sp 2 Dilithio Methandiides: From Geometric Curiosity to Simple Bonding Description. Chemistry 2023; 29:e202301911. [PMID: 37427720 DOI: 10.1002/chem.202301911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 07/07/2023] [Accepted: 07/10/2023] [Indexed: 07/11/2023]
Abstract
The reported tetracoordinate dilithio methandiide complex from Liddle and co-workers (1) is investigated from a coordination chemistry perspective, to probe the origin of its intriguing geometry. Through the application of a variety of computational techniques, non-covalent (steric, electrostatic) interactions are found to be dominant. Further, we arrive at a bonding description which emphasizes the tricoordinate sp2 -hybridized nature of the central methandiide carbon, differing somewhat from the original proposal. Thus, 1 is distinct from other dilithio methandiides since it contains only one C-Li σ-bond, and is found to be comparable to a simple aryllithium compound, phenyllithium.
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Affiliation(s)
- Isaac F Leach
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Tom Speelman
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Chiel Somsen
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Johannes E M N Klein
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Remco W A Havenith
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
- Ghent Quantum Chemistry Group, Department of Chemistry, Ghent University, 9000, Gent, Belgium
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Dubey G, Awari S, Singh T, Sahoo SC, Bharatam PV. Mesoionic and N-Heterocyclic Carbenes Coordinated N + Center: Experimental and Computational Analysis. Chempluschem 2021; 86:1416-1420. [PMID: 34636173 DOI: 10.1002/cplu.202100281] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 09/17/2021] [Indexed: 11/07/2022]
Abstract
N-Heterocyclic carbenes, carbocyclic carbenes, remote N-heterocyclic carbenes and N-heterocyclic silylenes are known to form L→N+ coordination bonds. However, mesoionic carbenes (MICs) are not reported to form coordination bonds with cationic nitrogen. Herein, synthesis and quantum chemical studies were performed on 1,2,3-triazol-5-ylidene stabilized N+ center. Six compounds with MIC→N+ ←NHC were synthesized. Density functional theory calculations and energy decomposition analysis were carried out to explore the bonding situation between MIC and N+ center. The C→N+ bond lengths were in the range of 1.295-1.342 Å and bond dissociation energies were <400 kcal/mol. Natural bond orbital analysis supported the presence of excess electron density (>3 electrons) at the N+ center. The computational and X-ray diffraction analysis results confirmed the presence of divalent NI character of center nitrogen and MIC→N+ ←NHC coordination interactions.
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Affiliation(s)
- Gurudutt Dubey
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Sector 67, S.A.S. Nagar, 160062, Punjab, India
| | - Shruti Awari
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Sector 67, S.A.S. Nagar, 160062, Punjab, India
| | - Tejender Singh
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Sector 67, S.A.S. Nagar, 160062, Punjab, India
| | - Subash C Sahoo
- Department of Chemistry, Panjab University, Sector 14, Chandigarh, 160014, India
| | - Prasad V Bharatam
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Sector 67, S.A.S. Nagar, 160062, Punjab, India
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Weyer N, Heinz M, Bruhn C, Holthausen MC, Siemeling U. Reactivity of an N-heterocyclic silylene with a 1,1'-ferrocenediyl backbone towards carbonyl compounds, including carbon suboxide. Chem Commun (Camb) 2021; 57:9378-9381. [PMID: 34528963 DOI: 10.1039/d1cc03947d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Reactions of a silylene with a ketene and with carbon suboxide are reported, respectively leading to the first silaallene oxide and to a silylketene, whose reaction with water affords the first structurally characterised stable methyleneketene and constitutes a unique type of single-crystal-to-single-crystal transformation of a molecular solid by a stoichiometric gas-solid chemical reaction.
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Affiliation(s)
- Nadine Weyer
- Institut für Chemie, Universität Kassel, Heinrich-Plett-Straße 40, 34132 Kassel, Germany.
| | - Myron Heinz
- Institut für Anorganische und Analytische Chemie, Goethe-Universität, Max-von-Laue-Straße 7, 60438 Frankfurt am Main, Germany
| | - Clemens Bruhn
- Institut für Chemie, Universität Kassel, Heinrich-Plett-Straße 40, 34132 Kassel, Germany.
| | - Max C Holthausen
- Institut für Anorganische und Analytische Chemie, Goethe-Universität, Max-von-Laue-Straße 7, 60438 Frankfurt am Main, Germany
| | - Ulrich Siemeling
- Institut für Chemie, Universität Kassel, Heinrich-Plett-Straße 40, 34132 Kassel, Germany.
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Pan S, Frenking G. A Critical Look at Linus Pauling's Influence on the Understanding of Chemical Bonding. Molecules 2021; 26:4695. [PMID: 34361846 PMCID: PMC8348226 DOI: 10.3390/molecules26154695] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 07/27/2021] [Accepted: 07/28/2021] [Indexed: 11/22/2022] Open
Abstract
The influence of Linus Pauling on the understanding of chemical bonding is critically examined. Pauling deserves credit for presenting a connection between the quantum theoretical description of chemical bonding and Gilbert Lewis's classical bonding model of localized electron pair bonds for a wide range of chemistry. Using the concept of resonance that he introduced, he was able to present a consistent description of chemical bonding for molecules, metals, and ionic crystals which was used by many chemists and subsequently found its way into chemistry textbooks. However, his one-sided restriction to the valence bond method and his rejection of the molecular orbital approach hindered further development of chemical bonding theory for a while and his close association of the heuristic Lewis binding model with the quantum chemical VB approach led to misleading ideas until today.
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Affiliation(s)
- Sudip Pan
- Jiangsu National Synergetic Innovation Center for Advanced Materials, School of Chemistry and Molecular Engineering, Institute of Advanced Synthesis, Nanjing Tech University, Nanjing 211816, China;
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Str. 4, 35037 Marburg, Germany
| | - Gernot Frenking
- Jiangsu National Synergetic Innovation Center for Advanced Materials, School of Chemistry and Molecular Engineering, Institute of Advanced Synthesis, Nanjing Tech University, Nanjing 211816, China;
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Str. 4, 35037 Marburg, Germany
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