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Durdabak DB, Dogan S, Tekol SD, Celik C, Ozalp VC, Tuna BG. Direct Detection of Viral Infections from Swab Samples by Probe-Gated Silica Nanoparticle-Based Lateral Flow Assay. ChemistryOpen 2024; 13:e202300120. [PMID: 37824210 PMCID: PMC10853071 DOI: 10.1002/open.202300120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Revised: 09/11/2023] [Indexed: 10/14/2023] Open
Abstract
Point-of-care diagnosis is crucial to control the spreading of viral infections. Here, universal-modifiable probe-gated silica nanoparticles (SNPs) based lateral flow assay (LFA) is developed in the interest of the rapid and early detection of viral infections. The most superior advantage of the rapid assay is its utility in detecting various sides of the virus directly from the human swab samples and its adaptability to detect various types of viruses. For this purpose, a high concentration of fluorescein and rhodamine B as a reporting material was loaded into SNPs with excellent loading capacity and measured using standard curve, 4.19 μmol ⋅ g-1 and 1.23 μmol ⋅ g-1 , respectively. As a model organism, severe acute respiratory syndrome coronavirus-2 (CoV-2) infections were selected by targeting its nonstructural (NSP9, NSP12) and envelope (E) genes as target sites of the virus. We showed that NSP12-gated SNPs-based LFA significantly outperformed detection of viral infection in 15 minutes from 0.73 pg ⋅ mL-1 synthetic viral solution and with a dilution of 1 : 103 of unprocessed human samples with an increasing test line intensity compared to steady state (n=12). Compared to the RT-qPCR method, the sensitivity, specificity, and accuracy of NSP12-gated SNPs were calculated as 100 %, 83 %, and 92 %, respectively. Finally, this modifiable nanoparticle system is a high-performance sensing technique that could take advantage of upcoming point-of-care testing markets for viral infection detections.
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Affiliation(s)
- Dilara Buse Durdabak
- Department of Biophysics Faculty of MedicineYeditepe UniversityIstanbul34755Turkey
| | - Soner Dogan
- Department of Medical Biology Faculty of MedicineYeditepe UniversityIstanbul34755Turkey
| | - Serap Demir Tekol
- Department of Clinical MicrobiologyUniversity of Health Sciences Kartal Dr. Lutfi Kirdar City HospitalIstanbul34865Turkey
| | - Caner Celik
- Department of Emergency Medical ServiceMemorial Sisli HospitalIstanbulTurkey
| | - Veli Cengiz Ozalp
- Department of Medical Biology Faculty of MedicineAtilim UniversityAnkara06830Turkey
| | - Bilge Guvenc Tuna
- Department of Biophysics Faculty of MedicineYeditepe UniversityIstanbul34755Turkey
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Dursun AD, Borsa BA, Bayramoglu G, Arica MY, Ozalp VC. Surface plasmon resonance aptasensor for Brucella detection in milk. Talanta 2021; 239:123074. [PMID: 34809985 DOI: 10.1016/j.talanta.2021.123074] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Revised: 10/31/2021] [Accepted: 11/15/2021] [Indexed: 01/03/2023]
Abstract
A Surface Plasmon Resonance (SPR) aptasensor was developed for the detection of Brucella melitensis (B. melitensis) in milk samples. Brucellosis is a bacterial zoonotic disease with global distribution caused mostly by contaminated milk or their products. Aptamers recognizing B. melitensis were selected following a whole bacteria-SELEX procedure. Two aptamers were chosen for high affinity and high specificity. The high affinity aptamer (B70 aptamer) was immobilized on the surface of magnetic silica core-shell nanoparticles for initial purification of the target bacteria cells from milk matrix. Another aptamer, highly specific for B. melitensis cells (B46 aptamer), was used to prepare SPR sensor chips for sensitive determination of Brucella in eluted samples from magnetic purification since direct injection of milk samples to SPR sensor chips is known for a high background unspecific signal. Thus, we integrated a quick and efficient magnetic isolation step for subsequent instant detection of B. melitensis contamination in one ml of milk sample by SPR with a LOD value as low as 27 ± 11 cells.
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Affiliation(s)
- Ali D Dursun
- Department of Physiology, School of Medicine, Atilim University, 06830, Ankara, Turkey; Vocational School of Health Services, Atilim University, 06830, Ankara, Turkey
| | - Baris A Borsa
- Linköping University, Molecular Physics and Nanoscience (MOLYT), Nucleic Acids Technology Lab (Nat-Lab), Linköping, Sweden
| | - Gulay Bayramoglu
- Biochemical Processing and Biomaterial Research Laboratory, Gazi University, 06500, Teknikokullar, Ankara, Turkey; Department of Chemistry, Faculty of Sciences, Gazi University, 06500, Teknikokullar, Ankara, Turkey
| | - M Yakup Arica
- Biochemical Processing and Biomaterial Research Laboratory, Gazi University, 06500, Teknikokullar, Ankara, Turkey
| | - Veli C Ozalp
- Department of Biology, Medical School, Atilim University, 06830, Ankara, Turkey.
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Folate Functionalized Lipid Nanoparticles for Targeted Therapy of Methicillin-Resistant Staphylococcus aureus. Pharmaceutics 2021; 13:pharmaceutics13111791. [PMID: 34834208 PMCID: PMC8617750 DOI: 10.3390/pharmaceutics13111791] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2021] [Revised: 10/13/2021] [Accepted: 10/15/2021] [Indexed: 12/27/2022] Open
Abstract
Methicillin-resistant Staphylococcus aureus (MRSA), commonly called a superbug, is a highly alarming antibiotic-resistant population of Staphylococcus aureus (S. aureus) bacteria. Vancomycin (VAN) was first approved by the FDA in 1988, and it is still regarded as the treatment of choice for MRSA. The efficacy of VAN treatment has become less effective due to the development of VAN resistance in MRSA and the potential for nephrotoxicity. This study aims to improve the efficacy of VAN treatment by identifying the folate receptor for MRSA infected tissues and developing folate decorated lipid nanoparticles containing VAN (LVAN). In comparison to conventional VAN, LVAN showed a higher bactericidal effect and a superior ability to inhibit biofilm in MRSA with an enhanced accumulation in MRSA infected thigh tissues and a reduced accumulation in kidney. The results suggested that LVAN is a promising candidate to overcome the current limitations of bacterial resistance and adverse side effects in kidneys found in VAN.
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Sudagidan M, Yildiz G, Onen S, Al R, Temiz ŞN, Yurt MNZ, Tasbasi BB, Acar EE, Coban A, Aydin A, Dursun AD, Ozalp VC. Targeted mesoporous silica nanoparticles for improved inhibition of disinfectant resistant Listeria monocytogenes and lower environmental pollution. JOURNAL OF HAZARDOUS MATERIALS 2021; 418:126364. [PMID: 34329020 DOI: 10.1016/j.jhazmat.2021.126364] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Revised: 05/25/2021] [Accepted: 06/07/2021] [Indexed: 06/13/2023]
Abstract
Benzalkonium chloride (BAC) is a common ingredient of disinfectants used for industrial, medical, food safety and domestic applications. It is a common pollutant detected in surface and wastewaters to induce adverse effects on Human health as well as aquatic and terrestrial life forms. Since disinfectant use is essential in combatting against microorganisms, the best approach to reduce ecotoxicity level is to restrict BAC use. We report here that encapsulation of BAC in mesoporous silica nanoparticles can provide an efficient strategy for inhibition of microbial activity with lower than usual concentrations of disinfectants. As a proof-of-concept, Listeria monocytogenes was evaluated for minimum inhibitory concentration (MIC) of nanomaterial encapsulated BAC. Aptamer molecular gate structures provided a specific targeting of the disinfectant to Listeria cells, leading to high BAC concentrations around bacterial cells, but significantly reduced amounts in total. This strategy allowed to inhibition of BAC resistant Listeria strains with 8 times less the usual disinfectant dose. BAC encapsulated and aptamer functionalized silica nanoparticles (AptBACNP) effectively killed only target bacteria L. monocytogenes, but not the non-target cells, Staphylococcus aureus or Escherichia coli. AptBACNP was not cytotoxic to Human cells as determined by in vitro viability assays.
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Affiliation(s)
- Mert Sudagidan
- Kit-ARGEM R&D Center, Konya Food and Agriculture University, Konya 42080, Turkey.
| | - Gulsah Yildiz
- Kit-ARGEM R&D Center, Konya Food and Agriculture University, Konya 42080, Turkey.
| | - Selin Onen
- Department of Biology, Medical School, Atilim University, 06830 Ankara, Turkey; Department of Stem Cell Sciences, Graduate School of Health Sciences, Hacettepe University, Ankara 06100, Turkey.
| | - Rabia Al
- Department of Molecular Biology and Genetics, Muğla Sıtkı Koçman University, 48000 Muğla, Turkey.
| | | | | | - Behiye Busra Tasbasi
- Kit-ARGEM R&D Center, Konya Food and Agriculture University, Konya 42080, Turkey.
| | - Elif Esma Acar
- Kit-ARGEM R&D Center, Konya Food and Agriculture University, Konya 42080, Turkey.
| | - Aysen Coban
- Department of Gastronomy and Culinary Arts, Istanbul Gedik University, Kartal, 34876 Istanbul, Turkey.
| | - Ali Aydin
- Department of Food Hygiene and Technology, Faculty of Veterinary Medicine, Istanbul University-Cerrahpaşa, Avcilar, Istanbul, Turkey.
| | - Ali D Dursun
- Department of Physiology, Medical School, Atilim University, 06830 Ankara, Turkey.
| | - Veli C Ozalp
- Department of Biology, Medical School, Atilim University, 06830 Ankara, Turkey.
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