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Caporusso CB, Cugliandolo LF, Digregorio P, Gonnella G, Suma A. Phase separation kinetics and cluster dynamics in two-dimensional active dumbbell systems. SOFT MATTER 2024; 20:4208-4225. [PMID: 38741521 DOI: 10.1039/d4sm00200h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2024]
Abstract
Molecular dynamics simulations were employed to investigate the phase separation process of a two-dimensional active Brownian dumbbell model. We evaluated the time dependence of the typical size of the dense component using the scaling properties of the structure factor, along with the averaged number of clusters and their radii of gyration. The growth observed is faster than in active disk models, and this effect is further enhanced under stronger activity. Next, we focused on studying the hexatic order of the clusters. The length associated with the orientational order increases algebraically with time and faster than for spherical active Brownian particles. Under weak active forces, most clusters exhibit a uniform internal orientational order. However, under strong forces, large clusters consist of domains with different orientational orders. We demonstrated that the latter configurations are not stable, and given sufficient time to evolve, they eventually achieve homogeneous configurations as well. No gas bubbles are formed within the clusters, even when there are patches of different hexatic order. Finally, attention was directed towards the geometry and motion of the clusters themselves. By employing a tracking algorithm, we showed that clusters smaller than the typical size at the observation time exhibit regular shapes, while larger ones display fractal characteristics. In between collisions or break-ups, the clusters behave as solid bodies. Their centers of mass undergo circular motion, with radii increasing with the cluster size. The angular velocity of the center of mass equals that of the constituents with respect to their center of mass. These observations were rationalised with a simple mechanical model.
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Affiliation(s)
- C B Caporusso
- Dipartimento Interateneo di Fisica, Università degli Studi di Bari, via Amendola 173, Bari, I-70126, Italy
- INFN, Sezione di Bari, via Amendola 173, Bari, I-70126, Italy
| | - L F Cugliandolo
- CNRS, Laboratoire de Physique Théorique et Hautes Energies, LPTHE, Sorbonne Université, F-75005 Paris, France
- Institut Universitaire de France, 1 rue Descartes, 75231 Paris Cedex 05, France
| | - P Digregorio
- Departement de Fisica de la Materia Condensada, Facultat de Fisica, Universitat de Barcelona, Martí i Franquès 1, E08028 Barcelona, Spain.
- UBICS University of Barcelona Institute of Complex Systems, Martí i Franquès 1, E08028 Barcelona, Spain
| | - G Gonnella
- Dipartimento Interateneo di Fisica, Università degli Studi di Bari, via Amendola 173, Bari, I-70126, Italy
- INFN, Sezione di Bari, via Amendola 173, Bari, I-70126, Italy
| | - A Suma
- Dipartimento Interateneo di Fisica, Università degli Studi di Bari, via Amendola 173, Bari, I-70126, Italy
- INFN, Sezione di Bari, via Amendola 173, Bari, I-70126, Italy
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Wamsler K, Head LC, Shendruk TN. Lock-key microfluidics: simulating nematic colloid advection along wavy-walled channels. SOFT MATTER 2024; 20:3954-3970. [PMID: 38682298 PMCID: PMC11095502 DOI: 10.1039/d3sm01536j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Accepted: 04/10/2024] [Indexed: 05/01/2024]
Abstract
Liquid crystalline media mediate interactions between suspended particles and confining geometries, which not only has potential to guide patterning and bottom-up colloidal assembly, but can also control colloidal migration in microfluidic devices. However, simulating such dynamics is challenging because nemato-elasticity, diffusivity and hydrodynamic interactions must all be accounted for within complex boundaries. We model the advection of colloids dispersed in flowing and fluctuating nematic fluids confined within 2D wavy channels. A lock-key mechanism between homeotropic colloids and troughs is found to be stronger for planar anchoring on the wavy walls compared to homeotropic anchoring on the wavy walls due to the relative location of the colloid-associated defects. Sufficiently large amplitudes result in stick-slip trajectories and even permanent locking of colloids in place. These results demonstrate that wavy walls not only have potential to direct colloids to specific docking sites but also to control site-specific resting duration and intermittent elution.
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Affiliation(s)
- Karolina Wamsler
- School of Physics and Astronomy, The University of Edinburgh, Peter Guthrie Tait Road, Edinburgh, EH9 3FD, UK.
| | - Louise C Head
- School of Physics and Astronomy, The University of Edinburgh, Peter Guthrie Tait Road, Edinburgh, EH9 3FD, UK.
| | - Tyler N Shendruk
- School of Physics and Astronomy, The University of Edinburgh, Peter Guthrie Tait Road, Edinburgh, EH9 3FD, UK.
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Clopés J, Gompper G, Winkler RG. Alignment and propulsion of squirmer pusher-puller dumbbells. J Chem Phys 2022; 156:194901. [DOI: 10.1063/5.0091067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The properties of microswimmer dumbbells composed of pusher-puller pairs are investigated by mesoscale hydrodynamic simulations employing the multiparticle collision dynamics approach for the fluid. An individual microswimmer is represented by a squirmer, and various active-stress combinations in a dumbbell are considered. The squirmers are connected by a bond, which does not impose any geometrical restriction on the individual rotational motion. Our simulations reveal a strong influence of the squirmers' flow fields on the orientation of their propulsion directions, their fluctuations, and the swimming behavior of a dumbbell. The properties of pusher-puller pairs with equal magnitude of the active stresses dependent only weakly on the stress magnitude. This is similar to dumbbells of microswimmers without hydrodynamic interactions. However, for non-equal stress magnitudes, the active stress implies strong orientational correlations of the swimmers' propulsion directions with respect to each other as well as the bond vector. The orientational coupling is most pronounced for pairs with large differences of the active stress magnitude. The alignment of the squirmer propulsion directions with respect to each other is preferentially orthogonal in dumbbells with a strong pusher and weak puller, and antiparallel in the opposite case when the puller dominates. These strong correlations affect the active motion of dumbbells which is faster for strong pushers and slower for strong pullers.
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Affiliation(s)
| | - Gerhard Gompper
- Institute of Biological Information Processing, Forschungszentrum Jülich GmbH, Germany
| | - Roland G. Winkler
- Institute for Advanced Simulation, Forschungszentrum Jülich, Germany
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Clopés Llahí J, Martín-Gómez A, Gompper G, Winkler RG. Simulating wet active polymers by multiparticle collision dynamics. Phys Rev E 2022; 105:015310. [PMID: 35193189 DOI: 10.1103/physreve.105.015310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Accepted: 01/05/2022] [Indexed: 06/14/2023]
Abstract
The conformational and dynamical properties of active Brownian polymers embedded in a fluid depend on the nature of the driving mechanism, e.g., self-propulsion or external actuation of the monomers. Implementations of self-propelled and actuated active Brownian polymers in a multiparticle collision (MPC) dynamics fluid are presented, which capture the distinct differences between the two driving mechanisms. The active force-free nature of self-propelled monomers requires adaptations of the MPC simulation scheme, with its streaming and collision steps, where the monomer self-propulsion velocity has to be omitted in the collision step. Comparison of MPC simulation results for active polymers in dilute solution with results of Brownian dynamics simulations accounting for hydrodynamics via the Rotne-Prager-Yamakawa tensor confirm the suitability of the implementation. The polymer conformational and dynamical properties are analyzed by the static and dynamic structure factor, and the scaling behavior of the latter with respect to the wave number and time dependence are discussed. The dynamic structure factor displays various activity-induced temporal regimes, depending on the considered wave number, which reflect the persistent diffusive motion of the whole polymer at small wave numbers, and the activity-enhanced internal dynamics at large wave numbers. The obtained simulation results are compared with theoretical predictions.
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Affiliation(s)
- Judit Clopés Llahí
- Theoretical Physics of Living Matter, Institute of Biological Information Processing and Institute for Advanced Simulation, Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Aitor Martín-Gómez
- Theoretical Physics of Living Matter, Institute of Biological Information Processing and Institute for Advanced Simulation, Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Gerhard Gompper
- Theoretical Physics of Living Matter, Institute of Biological Information Processing and Institute for Advanced Simulation, Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Roland G Winkler
- Theoretical Physics of Living Matter, Institute of Biological Information Processing and Institute for Advanced Simulation, Forschungszentrum Jülich, 52425 Jülich, Germany
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Liebchen B, Mukhopadhyay AK. Interactions in active colloids. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2021; 34:083002. [PMID: 34788232 DOI: 10.1088/1361-648x/ac3a86] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Accepted: 11/16/2021] [Indexed: 06/13/2023]
Abstract
The past two decades have seen a remarkable progress in the development of synthetic colloidal agents which are capable of creating directed motion in an unbiased environment at the microscale. These self-propelling particles are often praised for their enormous potential to self-organize into dynamic nonequilibrium structures such as living clusters, synchronized super-rotor structures or self-propelling molecules featuring a complexity which is rarely found outside of the living world. However, the precise mechanisms underlying the formation and dynamics of many of these structures are still barely understood, which is likely to hinge on the gaps in our understanding of how active colloids interact. In particular, besides showing comparatively short-ranged interactions which are well known from passive colloids (Van der Waals, electrostatic etc), active colloids show novel hydrodynamic interactions as well as phoretic and substrate-mediated 'osmotic' cross-interactions which hinge on the action of the phoretic field gradients which are induced by the colloids on other colloids in the system. The present article discusses the complexity and the intriguing properties of these interactions which in general are long-ranged, non-instantaneous, non-pairwise and non-reciprocal and which may serve as key ingredients for the design of future nonequilibrium colloidal materials. Besides providing a brief overview on the state of the art of our understanding of these interactions a key aim of this review is to emphasize open key questions and corresponding open challenges.
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Affiliation(s)
- Benno Liebchen
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, 64289 Darmstadt, Germany
| | - Aritra K Mukhopadhyay
- Institute for Condensed Matter Physics, Technische Universität Darmstadt, 64289 Darmstadt, Germany
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Dhont JKG, Park GW, Briels WJ. Motility-induced inter-particle correlations and dynamics: a microscopic approach for active Brownian particles. SOFT MATTER 2021; 17:5613-5632. [PMID: 33998621 DOI: 10.1039/d1sm00426c] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Amongst the theoretical approaches towards the dynamics and phase behaviour of suspensions of active Brownian particles (ABPs), no attempt has been made to specify the motility-induced inter-particle correlations as quantified by the pair-correlation function. Here, we derive expressions for the pair-correlation function for ABPs with very short-ranged direct interactions for small and large swimming velocities and low concentrations. The pair-correlation function is the solution of a differential equation that is obtained from the Fokker-Planck equation for the probability density function of the positions and orientations of the ABPs. For large swimming Peclet numbers, λ, the pair-correlation function is highly asymmetric. The pair-correlation function attains a large value, ∼λ, within a small region of spatial extent, ∼1/λ, near contact of the ABPs when the ABPs approach each other. The pair-correlation function is small within a large region of spatial extent, ∼λ1/3, when the ABPs move apart, with a contact value that is essentially zero. From the explicit expressions for the pair-correlation function, Fick's diffusion equation is generalized to include motility. It is shown that mass transport, in case of large swimming velocities, is dominated by a preferred swimming direction that is induced by concentration gradients. The expression for the pair-correlation function derived in this paper could serve as a starting point to obtain approximate results for high concentrations, which could then be employed in a first-principles analysis of the dynamics and phase behaviour of ABPs at higher concentrations.
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Affiliation(s)
- J K G Dhont
- Institute of Biological Information Processing, IBI-4, Biomacromolecular Systems and Processes, Forschungszentrum Jülich GmbH, D-52428 Jülich, Germany. and Heinrich Heine Universität, 40225 Düsseldorf, Germany
| | - G W Park
- Institute of Biological Information Processing, IBI-4, Biomacromolecular Systems and Processes, Forschungszentrum Jülich GmbH, D-52428 Jülich, Germany.
| | - W J Briels
- Institute of Biological Information Processing, IBI-4, Biomacromolecular Systems and Processes, Forschungszentrum Jülich GmbH, D-52428 Jülich, Germany. and MESA+ Institute for Nanotechnology, University of Twente, P. O. Box 217, 7500 AE Enschede, The Netherlands.
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