1
|
Dong L, Zhang Y, Fu B, Swart C, Jiang H, Liu Y, Huggett J, Wielgosz R, Niu C, Li Q, Zhang Y, Park SR, Sui Z, Yu L, Liu Y, Xie Q, Zhang H, Yang Y, Dai X, Shi L, Yin Y, Fang X. Reliable biological and multi-omics research through biometrology. Anal Bioanal Chem 2024; 416:3645-3663. [PMID: 38507042 DOI: 10.1007/s00216-024-05239-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 02/28/2024] [Accepted: 03/04/2024] [Indexed: 03/22/2024]
Abstract
Metrology is the science of measurement and its applications, whereas biometrology is the science of biological measurement and its applications. Biometrology aims to achieve accuracy and consistency of biological measurements by focusing on the development of metrological traceability, biological reference measurement procedures, and reference materials. Irreproducibility of biological and multi-omics research results from different laboratories, platforms, and analysis methods is hampering the translation of research into clinical uses and can often be attributed to the lack of biologists' attention to the general principles of metrology. In this paper, the progresses of biometrology including metrology on nucleic acid, protein, and cell measurements and its impacts on the improvement of reliability and comparability in biological research are reviewed. Challenges in obtaining more reliable biological and multi-omics measurements due to the lack of primary reference measurement procedures and new standards for biological reference materials faced by biometrology are discussed. In the future, in addition to establishing reliable reference measurement procedures, developing reference materials from single or multiple parameters to multi-omics scale should be emphasized. Thinking in way of biometrology is warranted for facilitating the translation of high-throughput omics research into clinical practices.
Collapse
Affiliation(s)
- Lianhua Dong
- Center for Advanced Measurement of Science, National Institute of Metrology, Beijing, 100029, China.
| | - Yu Zhang
- Center for Advanced Measurement of Science, National Institute of Metrology, Beijing, 100029, China
| | - Boqiang Fu
- Center for Advanced Measurement of Science, National Institute of Metrology, Beijing, 100029, China
| | - Claudia Swart
- Physikalisch-Technische Bundesanstalt, 38116, Braunschweig, Germany
| | | | - Yahui Liu
- Center for Advanced Measurement of Science, National Institute of Metrology, Beijing, 100029, China
| | - Jim Huggett
- National Measurement Laboratory at LGC (NML), Teddington, Middlesex, UK
| | - Robert Wielgosz
- Bureau International Des Poids Et Mesures (BIPM), Pavillon de Breteuil, 92312, Sèvres Cedex, France
| | - Chunyan Niu
- Center for Advanced Measurement of Science, National Institute of Metrology, Beijing, 100029, China
| | - Qianyi Li
- BGI, BGI-Shenzhen, Shenzhen, 518083, China
| | - Yongzhuo Zhang
- Center for Advanced Measurement of Science, National Institute of Metrology, Beijing, 100029, China
| | - Sang-Ryoul Park
- Korea Research Institute of Standards and Science, Daejeon, Republic of Korea
| | - Zhiwei Sui
- Center for Advanced Measurement of Science, National Institute of Metrology, Beijing, 100029, China
| | - Lianchao Yu
- Center for Advanced Measurement of Science, National Institute of Metrology, Beijing, 100029, China
| | | | - Qing Xie
- BGI, BGI-Shenzhen, Shenzhen, 518083, China
| | - Hongfu Zhang
- BGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China
| | | | - Xinhua Dai
- Center for Advanced Measurement of Science, National Institute of Metrology, Beijing, 100029, China.
| | - Leming Shi
- State Key Laboratory of Genetic Engineering, School of Life Sciences and Human Phenome Institute, Fudan University, Shanghai, 200438, China
| | - Ye Yin
- BGI, BGI-Shenzhen, Shenzhen, 518083, China.
| | - Xiang Fang
- Center for Advanced Measurement of Science, National Institute of Metrology, Beijing, 100029, China.
| |
Collapse
|
2
|
Terpiłowska S, Pięta E, Roman M, Paluszkiewicz C, Kwiatek WM. Spectroscopic imaging to assess biochemical alterations in liver carcinoma cells exposed to transition metals. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 303:123228. [PMID: 37579664 DOI: 10.1016/j.saa.2023.123228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Revised: 07/17/2023] [Accepted: 08/01/2023] [Indexed: 08/16/2023]
Abstract
Despite the invaluable role of transition metals in every living organism, it should be remembered that failure to maintain the proper balance and exceed the appropriate dose may have the opposite effect. In the era of such a popular and propagated need for supplementation in the media, one should bear in mind the harmful effects that may become the result of improper and excessive intake of transition metals. This article establishes the feasibility of Raman (RS) and Fourier-transform infrared (FT-IR) spectroscopic imaging at the single-cell level to investigate the cellular response to various transition metals. These two non-destructive and perfectly complementary methods allow for in-depth monitoring of changes taking place within the cell under the influence of the agent used. HepG2 liver carcinoma cells were exposed to chromium, iron, cobalt, molybdenum, and nickel at 1 and 2 mM concentrations. Spectroscopic results were further supported by biological evaluation of selected caspases concentration. The caspase- 3, 6, 8, 9, and 12 concentrations were determined with the use of the enzyme-linked immunosorbent assay (ELISA) method. This study shows the induction of apoptosis in the intrinsic pathway by all studied transition metals. Cellular metabolism alterations are induced by mitochondrial metabolism changes and endoplasmic reticulum (ER) metabolism variations. Moreover, nickel induces not only the intrinsic pathway of apoptosis but also the extrinsic pathway of this process.
Collapse
Affiliation(s)
- Sylwia Terpiłowska
- Jan Kochanowski University of Kielce, Collegium Medicum, Department of Surgical Medicine with the Laboratory of Medical Genetics, IX Wieków Kielc 19A Av., 25-317 Kielce, Poland.
| | - Ewa Pięta
- Institute of Nuclear Physics Polish Academy of Sciences, PL-31342 Krakow, Poland
| | - Maciej Roman
- Institute of Nuclear Physics Polish Academy of Sciences, PL-31342 Krakow, Poland
| | | | - Wojciech M Kwiatek
- Institute of Nuclear Physics Polish Academy of Sciences, PL-31342 Krakow, Poland
| |
Collapse
|
3
|
Assad M, Paracha RN, Siddique AB, Shaheen MA, Ahmad N, Mustaqeem M, Kanwal F, Mustafa MZU, Rehman MFU, Fatima S, Lu C. In Silico and In Vitro Studies of 4-Hydroxycoumarin-Based Heterocyclic Enamines as Potential Anti-Tumor Agents. Molecules 2023; 28:5828. [PMID: 37570800 PMCID: PMC10421012 DOI: 10.3390/molecules28155828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Revised: 07/20/2023] [Accepted: 07/26/2023] [Indexed: 08/13/2023] Open
Abstract
The present study reports the one-step synthesis of several 3-formyl-4-hydroxycouramin-derived enamines (4a-4i) in good yields (65-94%). The characterization of the synthesized compounds was carried out via advanced analytical and spectroscopic techniques, such as melting point, electron impact mass spectrometry (EI-MS), 1H-NMR, 13C-NMR, elemental analysis, FTIR, and UV-Visible spectroscopy. The reaction conditions were optimized, and the maximum yield was obtained at 3-4 h of reflux of the reactants, using 2-butanol as a solvent. The potato disc tumor assay was used to assess Agrobacterium tumefaciens-induced tumors to evaluate the anti-tumor activities of compounds (4a-4i), using Vinblastine as a standard drug. The compound 4g showed the lowest IC50 value (1.12 ± 0.2), which is even better than standard Vinblastine (IC50 7.5 ± 0.6). For further insight into their drug actions, an in silico docking of the compounds was also carried out against the CDK-8 protein. The binding energy values of compounds were found to agree with the experimental results. The compounds 4g and 4h showed the best affinities toward protein, with a binding energy value of -6.8 kcal/mol.
Collapse
Affiliation(s)
- Mediha Assad
- College of Biological Sciences and Medical Engineering, Donghua University, 2999 North Ren Min Road, Shanghai 201620, China
- Department of Chemistry, Government Graduate Islamia College for Women Cantt Lahore, Lahore 54000, Pakistan
| | | | - Abu Bakar Siddique
- Institute of Chemistry, University of Sargodha, Sargodha 40100, Pakistan; (A.B.S.)
| | | | - Nadeem Ahmad
- Department of Pharmacy, Comsats University Islamabad, Lahore Campus, Lahore 54000, Pakistan
| | - Muhammad Mustaqeem
- Institute of Chemistry, University of Sargodha, Sargodha 40100, Pakistan; (A.B.S.)
| | - Fariha Kanwal
- School of Biomedical Engineering, Shanghai Jiaotong University, Shanghai 200030, China
| | | | | | - Sumaya Fatima
- Research Center, The Fourth Hospital of Hebei Medical University, Shijiazhuang 050011, China
| | - Changrui Lu
- College of Biological Sciences and Medical Engineering, Donghua University, 2999 North Ren Min Road, Shanghai 201620, China
| |
Collapse
|
4
|
Song B, Fan X, Gu H. Chestnut-Tannin-Crosslinked, Antibacterial, Antifreezing, Conductive Organohydrogel as a Strain Sensor for Motion Monitoring, Flexible Keyboards, and Velocity Monitoring. ACS APPLIED MATERIALS & INTERFACES 2023; 15:2147-2162. [PMID: 36562537 DOI: 10.1021/acsami.2c18441] [Citation(s) in RCA: 35] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Flexible sensing devices (FSDs) fabricated using conductive hydrogels have attracted researchers' extensive enthusiasm in recent years due to their versatility. Considering the complexity of their application environments, the integration of various functional characteristics (e.g., excellent mechanical, antibacterial, and antifreezing properties) is an important guarantee for FSDs to stably perform their applications in different environments. Herein, we developed a multifunctional conductive polyvinyl alcohol (PVA) organohydrogel PVA-CT-Ag-Al-Gly (PCAAG) by using a green, natural, and cheap biomass, chestnut tannin (CT), as a crosslinking agent, nano-silver particles (AgNPs) as an antimicrobial agent, aluminum trichloride (AlCl3) as a conducting medium, and the mixed water-glycerol as the solvent system. In this organohydrogel system, CT acted not only as the reducing and stabilizing agent for the preparation of antibacterial AgNPs but also as the crosslinking agent owing to its strong multiple hydrogen bonding interactions with PVA, realizing its multifunctional application. The PCAAG organohydrogel possessed outstanding physical and mechanical properties (350.54% of the maximum fracture strain and 1.55 MPa of the maximum tensile strength), considerable bacteriostatic effects against both Escherichia coli and Staphylococcus aureus, and excellent freeze resistance (it could function normally at -20 °C). The motion-monitoring sensor based on the PCAAG organohydrogel exhibited excellent specificity recognition for both large-amplitude (e.g., elbow bending, wrist bending, finger bending, running and walking, etc.) and small-amplitude (frowning and swallowing) human movements. The flexible keyboard constructed by using the PCAAG organohydrogel could easily achieve the transformation between digital signals and electrical signals, and the signal output had both specificity and stability. The velocity-monitoring sensor fabricated by using the PCAAG organohydrogel could accurately measure the speed of the object movement (less than 3% of relative error). In short, the present PCAAG organohydrogel solves the problems of the single application environment and a few application scenarios of traditional conductive hydrogels and possesses remarkable application potential as a multifunctional FSD in many fields such as artificial intelligence, sport management, soft robots, and human-computer interface.
Collapse
Affiliation(s)
- Bin Song
- Key Laboratory of Leather Chemistry and Engineering of Ministry of Education, Sichuan University, Chengdu610065, China
- National Engineering Research Center of Clean Technology in Leather Industry, Sichuan University, Chengdu610065, China
| | - Xin Fan
- Key Laboratory of Leather Chemistry and Engineering of Ministry of Education, Sichuan University, Chengdu610065, China
- National Engineering Research Center of Clean Technology in Leather Industry, Sichuan University, Chengdu610065, China
| | - Haibin Gu
- Key Laboratory of Leather Chemistry and Engineering of Ministry of Education, Sichuan University, Chengdu610065, China
- National Engineering Research Center of Clean Technology in Leather Industry, Sichuan University, Chengdu610065, China
| |
Collapse
|
5
|
He Z, Liu J, Fan X, Song B, Gu H. Tara Tannin-Cross-Linked, Underwater-Adhesive, Super Self-Healing, and Recyclable Gelatin-Based Conductive Hydrogel as a Strain Sensor. Ind Eng Chem Res 2022. [DOI: 10.1021/acs.iecr.2c03253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Affiliation(s)
- Zhen He
- Key Laboratory of Leather Chemistry and Engineering of Ministry of Education, Sichuan University, Chengdu610065, China
- National Engineering Research Center of Clean Technology in Leather Industry, Sichuan University, Chengdu610065, China
| | - Jiachang Liu
- Key Laboratory of Leather Chemistry and Engineering of Ministry of Education, Sichuan University, Chengdu610065, China
- National Engineering Research Center of Clean Technology in Leather Industry, Sichuan University, Chengdu610065, China
| | - Xin Fan
- Key Laboratory of Leather Chemistry and Engineering of Ministry of Education, Sichuan University, Chengdu610065, China
- National Engineering Research Center of Clean Technology in Leather Industry, Sichuan University, Chengdu610065, China
| | - Bin Song
- Key Laboratory of Leather Chemistry and Engineering of Ministry of Education, Sichuan University, Chengdu610065, China
- National Engineering Research Center of Clean Technology in Leather Industry, Sichuan University, Chengdu610065, China
| | - Haibin Gu
- Key Laboratory of Leather Chemistry and Engineering of Ministry of Education, Sichuan University, Chengdu610065, China
- National Engineering Research Center of Clean Technology in Leather Industry, Sichuan University, Chengdu610065, China
| |
Collapse
|