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Dai S, Zhong J, Yang X, Chen C, Zhou L, Liu X, Sun J, Ye K, Zhang H, Li L, Naumov P, Lu R. Strategies to Diversification of the Mechanical Properties of Organic Crystals. Angew Chem Int Ed Engl 2024; 63:e202320223. [PMID: 38588224 DOI: 10.1002/anie.202320223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Revised: 04/06/2024] [Accepted: 04/08/2024] [Indexed: 04/10/2024]
Abstract
Structurally ordered soft materials that respond to complementary stimuli are susceptible to control over their spatial and temporal morphostructural configurations by intersectional or combined effects such as gating, feedback, shape-memory, or programming. In the absence of general and robust design and prediction strategies for their mechanical properties, at present, combined chemical and crystal engineering approaches could provide useful guidelines to identify effectors that determine both the magnitude and time of their response. Here, we capitalize on the purported ability of soft intermolecular interactions to instigate mechanical compliance by using halogenation to elicit both mechanical and photochemical activity of organic crystals. Starting from (E)-1,4-diphenylbut-2-ene-1,4-dione, whose crystals are brittle and photoinert, we use double and quadruple halogenation to introduce halogen-bonded planes that become interfaces for molecular gliding, rendering the material mechanically and photochemically plastic. Fluorination diversifies the mechanical effects further, and crystals of the tetrafluoro derivative are not only elastic but also motile, displaying the rare photosalient effect.
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Affiliation(s)
- Shuting Dai
- Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, 130021, P. R. China
| | - Jiangbin Zhong
- Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, 130021, P. R. China
| | - Xiqiao Yang
- Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, 130021, P. R. China
| | - Chao Chen
- Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, 130021, P. R. China
| | - Liping Zhou
- Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, 130021, P. R. China
| | - Xinyu Liu
- Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, 130021, P. R. China
| | - Jingbo Sun
- Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, 130021, P. R. China
| | - Kaiqi Ye
- Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, 130021, P. R. China
| | - Hongyu Zhang
- Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, 130021, P. R. China
| | - Liang Li
- Smart Materials Lab, New York University Abu Dhabi PO Box 129188, Abu Dhabi, UAE
- Department of Sciences and Engineering, Sorbonne University Abu Dhabi, PO Box 38044, Abu Dhabi, UAE
| | - Panče Naumov
- Smart Materials Lab, New York University Abu Dhabi PO Box 129188, Abu Dhabi, UAE
- Center for Smart Engineering Materials, New York University Abu Dhabi, PO Box 129188, Abu Dhabi, UAE
- Research Center for Environment and Materials, Macedonian Academy of Sciences and Arts, Bul. Krste Misirkov 2, MK-1000, Skopje, Macedonia
- Molecular Design Institute, Department of Chemistry, New York University, 100 Washington Square East, New York, NY 10003, USA
| | - Ran Lu
- Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, 130021, P. R. China
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Beran GJO, Greenwell C, Cook C, Řezáč J. Improved Description of Intra- and Intermolecular Interactions through Dispersion-Corrected Second-Order Møller-Plesset Perturbation Theory. Acc Chem Res 2023; 56:3525-3534. [PMID: 37963266 DOI: 10.1021/acs.accounts.3c00578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2023]
Abstract
ConspectusThe quantum chemical modeling of organic crystals and other molecular condensed-phase problems requires computationally affordable electronic structure methods which can simultaneously describe intramolecular conformational energies and intermolecular interactions accurately. To achieve this, we have developed a spin-component-scaled, dispersion-corrected second-order Møller-Plesset perturbation theory (SCS-MP2D) model. SCS-MP2D augments canonical MP2 with a dispersion correction which removes the uncoupled Hartree-Fock dispersion energy present in canonical MP2 and replaces it with a more reliable coupled Kohn-Sham treatment, all evaluated within the framework of Grimme's D3 dispersion model. The spin-component scaling is then used to improve the description of the residual (nondispersion) portion of the correlation energy.The SCS-MP2D model improves upon earlier corrected MP2 models in a few ways. Compared to the highly successful dispersion-corrected MP2C model, which is based solely on intermolecular perturbation theory, the SCS-MP2D dispersion correction improves the description of both inter- and intramolecular interactions. The dispersion correction can also be evaluated with trivial computational cost, and nuclear analytic gradients are computed readily to enable geometry optimizations. In contrast to earlier spin-component scaling MP2 models, the optimal spin-component scaling coefficients are only mildly sensitive to the choice of training data, and a single global parametrization of the model can describe both thermochemistry and noncovalent interactions.The resulting dispersion-corrected, spin-component-scaled MP2 (SCS-MP2D) model predicts conformational energies and intermolecular interactions with accuracy comparable to or better than those of many range-separated and double-hybrid density functionals, as is demonstrated on a variety of benchmark tests. Among the functionals considered here, only the revDSD-PBEP86-D3(BJ) functional gives consistently smaller errors in benchmark tests. The results presented also hint that further improvements of SCS-MP2D may be possible through a more robust fitting procedure for the seven empirical parameters.To demonstrate the performance of SCS-MP2D further, several applications to molecular crystal problems are presented. The three chosen examples all represent cases where density-driven delocalization error causes GGA or hybrid density functionals to artificially stabilize crystals exhibiting more extended π-conjugation. Our pragmatic strategy addresses the delocalization error by combining a periodic density functional theory (DFT) treatment of the infinite lattice with intramolecular/conformational energy corrections computed with SCS-MP2D. For the anticancer drug axitinib, applying the SCS-MP2D conformational energy correction produces crystal polymorph stabilities that are consistent with experiment, in contrast to earlier studies. For the crystal structure prediction of the ROY molecule, so named for its colorful red, orange, and yellow crystals, this approach leads to the first plausible crystal energy landscape, and it reveals that the lowest-energy polymorphs have already been found experimentally. Finally, in the context of photomechanical crystals, which transform light into mechanical work, these techniques are used to predict the structural transformations and extract design principles for maximizing the work performed.
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Affiliation(s)
- Gregory J O Beran
- Department of Chemistry, University of California, Riverside, California 92521, United States
| | - Chandler Greenwell
- Department of Chemistry, University of California, Riverside, California 92521, United States
| | - Cameron Cook
- Department of Chemistry, University of California, Riverside, California 92521, United States
| | - Jan Řezáč
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 160 00 Prague, Czech Republic
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Beran GJO. Frontiers of molecular crystal structure prediction for pharmaceuticals and functional organic materials. Chem Sci 2023; 14:13290-13312. [PMID: 38033897 PMCID: PMC10685338 DOI: 10.1039/d3sc03903j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Accepted: 11/02/2023] [Indexed: 12/02/2023] Open
Abstract
The reliability of organic molecular crystal structure prediction has improved tremendously in recent years. Crystal structure predictions for small, mostly rigid molecules are quickly becoming routine. Structure predictions for larger, highly flexible molecules are more challenging, but their crystal structures can also now be predicted with increasing rates of success. These advances are ushering in a new era where crystal structure prediction drives the experimental discovery of new solid forms. After briefly discussing the computational methods that enable successful crystal structure prediction, this perspective presents case studies from the literature that demonstrate how state-of-the-art crystal structure prediction can transform how scientists approach problems involving the organic solid state. Applications to pharmaceuticals, porous organic materials, photomechanical crystals, organic semi-conductors, and nuclear magnetic resonance crystallography are included. Finally, efforts to improve our understanding of which predicted crystal structures can actually be produced experimentally and other outstanding challenges are discussed.
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Affiliation(s)
- Gregory J O Beran
- Department of Chemistry, University of California Riverside Riverside CA 92521 USA
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Cook CJ, Perry CJ, Beran GJO. Organic Crystal Packing Is Key to Determining the Photomechanical Response. J Phys Chem Lett 2023:6823-6831. [PMID: 37487003 DOI: 10.1021/acs.jpclett.3c01676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/26/2023]
Abstract
Organic photomechanical crystals have great promise as molecular machines, but their development has been hindered by a lack of clear theoretical design principles. While much research has focused on the choice of the molecular photochrome, density functional theory calculations here demonstrate that crystal packing has a major impact on the work densities that can be produced by a photochrome. Examination of two diarylethene molecules reveals that the predicted work densities can vary by an order of magnitude across different experimentally known crystal structures of the same species. The highest work densities occur when molecules are aligned in parallel, thereby producing a highly anisotropic photomechanical response. These results suggest that a greater emphasis on polymorph screening and/or crystal engineering could improve the work densities achieved by photomechanical engines. Finally, an inherent thermodynamic asymmetry is identified that biases photomechanical engines to exhibit higher work densities in the forward stroke direction.
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Affiliation(s)
- Cameron J Cook
- Department of Chemistry, University of California, Riverside, California 92521, United States
| | - Cody J Perry
- Department of Chemistry, University of California, Riverside, California 92521, United States
| | - Gregory J O Beran
- Department of Chemistry, University of California, Riverside, California 92521, United States
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Cook CJ, Li W, Lui BF, Gately TJ, Al-Kaysi RO, Mueller LJ, Bardeen CJ, Beran GJO. A theoretical framework for the design of molecular crystal engines. Chem Sci 2023; 14:937-949. [PMID: 36755715 PMCID: PMC9890974 DOI: 10.1039/d2sc05549j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Accepted: 12/19/2022] [Indexed: 12/24/2022] Open
Abstract
Photomechanical molecular crystals have garnered attention for their ability to transform light into mechanical work, but difficulties in characterizing the structural changes and mechanical responses experimentally have hindered the development of practical organic crystal engines. This study proposes a new computational framework for predicting the solid-state crystal-to-crystal photochemical transformations entirely from first principles, and it establishes a photomechanical engine cycle that quantifies the anisotropic mechanical performance resulting from the transformation. The approach relies on crystal structure prediction, solid-state topochemical principles, and high-quality electronic structure methods. After validating the framework on the well-studied [4 + 4] cycloadditions in 9-methyl anthracene and 9-tert-butyl anthracene ester, the experimentally-unknown solid-state transformation of 9-carboxylic acid anthracene is predicted for the first time. The results illustrate how the mechanical work is done by relaxation of the crystal lattice to accommodate the photoproduct, rather than by the photochemistry itself. The large ∼107 J m-3 work densities computed for all three systems highlight the promise of photomechanical crystal engines. This study demonstrates the importance of crystal packing in determining molecular crystal engine performance and provides tools and insights to design improved materials in silico.
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Affiliation(s)
- Cameron J. Cook
- Department of Chemistry, University of California RiversideRiverside CA 92521USA
| | - Wangxiang Li
- Department of Chemistry, University of California Riverside Riverside CA 92521 USA
| | - Brandon F. Lui
- Department of Chemistry, University of California RiversideRiverside CA 92521USA
| | - Thomas J. Gately
- Department of Chemistry, University of California RiversideRiverside CA 92521USA
| | - Rabih O. Al-Kaysi
- College of Science and Health Professions-3124, King Saud Bin Abdulaziz University for Health Sciences, and King Abdullah International Medical Research Center, Ministry of National Guard Health AffairsRiyadh 11426Kingdom of Saudi Arabia
| | - Leonard J. Mueller
- Department of Chemistry, University of California RiversideRiverside CA 92521USA
| | | | - Gregory J. O. Beran
- Department of Chemistry, University of California RiversideRiverside CA 92521USA
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Rana B, Beran GJO, Herbert JM. Correcting π-delocalisation errors in conformational energies using density-corrected DFT, with application to crystal polymorphs. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2138789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
Affiliation(s)
- Bhaskar Rana
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA
| | | | - John M. Herbert
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA
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Ravi A, Hassan SZ, Bhandary S, Sureshan KM. Topochemical Postulates: Are They Relevant for Topochemical Reactions Occurring at Elevated Temperatures? Angew Chem Int Ed Engl 2022; 61:e202200954. [PMID: 35258143 DOI: 10.1002/anie.202200954] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Indexed: 12/26/2022]
Abstract
A rigid inositol-derived monomer functionalized with azide and alkyne as the complementary reactive groups (CRGs) crystallized as three distinct polymorphs I-III. Despite the unsuitable orientation of CRGs in the crystals for complete polymerization, all the three polymorphs underwent regiospecific and quantitative topochemical azide-alkyne cycloaddition (TAAC) polymerization upon heating to yield three different polymorphs of 1,2,3-triazol-1,4-diyl-linked-poly-neo-inositol. The molecules in these polymorphs exploit the weak intermolecular interactions, free space in the crystal lattice, and heat energy for their large and cooperative molecular motion to attain a transient reactive orientation, ultimately leading to the regiospecific TAAC reaction yielding distinct crystalline polymers. This study cautions that the overreliance on topochemical postulates for the prediction of topochemical reactivity at high temperatures could be misleading.
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Affiliation(s)
- Arthi Ravi
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, 695551, Vithura, India
| | - Syed Zahid Hassan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, 695551, Vithura, India.,Present Address: Department of Chemical Engineering, Pohang University of Science & Technology (POSTECH), Pohang, 37673, Republic of Korea
| | - Subhrajyoti Bhandary
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, 695551, Vithura, India.,Present Address: Department of Chemistry, Ghent University, Krijgslaan 281-S3, 9000, Ghent, Belgium
| | - Kana M Sureshan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, 695551, Vithura, India
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8
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Ravi A, Hassan SZ, Bhandary S, Sureshan KM. Topochemical Postulates: Are They Relevant for Topochemical Reactions Occurring at Elevated Temperatures? Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202200954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Arthi Ravi
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram 695551 Vithura India
| | - Syed Zahid Hassan
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram 695551 Vithura India
- Present Address: Department of Chemical Engineering Pohang University of Science & Technology (POSTECH) Pohang 37673 Republic of Korea
| | - Subhrajyoti Bhandary
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram 695551 Vithura India
- Present Address: Department of Chemistry Ghent University Krijgslaan 281-S3 9000 Ghent Belgium
| | - Kana M. Sureshan
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram 695551 Vithura India
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Gupta P, Allu S, Hazarika PJ, Ray NR, Nangia AK, Nath NK. Fast and reversible bidirectional photomechanical response displayed by a flexible polycrystalline aggregate of a hydrazone. CrystEngComm 2022. [DOI: 10.1039/d2ce00829g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this study, a typical laboratory experiment was carried out to isolate the flat strips of a flexible polycrystalline aggregate of a hydrazone derivative.
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Affiliation(s)
- Poonam Gupta
- Department of Chemistry, National Institute of Technology, Meghalaya 793003, India
| | - Suryanarayana Allu
- School of Chemistry, University of Hyderabad, Central University P.O., Prof. C. R. Rao Road, Hyderabad 500046, India
| | - Pragyan J. Hazarika
- Department of Chemistry, National Institute of Technology, Meghalaya 793003, India
| | - Nisha R. Ray
- Department of Chemistry, National Institute of Technology, Meghalaya 793003, India
| | - Ashwini K. Nangia
- School of Chemistry, University of Hyderabad, Central University P.O., Prof. C. R. Rao Road, Hyderabad 500046, India
| | - Naba K. Nath
- Department of Chemistry, National Institute of Technology, Meghalaya 793003, India
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