1
|
Sedmidubská B, Denisov S, Mostafavi M, Denifl S, Izadi F, Ončák M, Luxford TFM, Chvátil D, Pinkas J, Kočišek J. Nitro-Group π System Drives the Interaction of RRx-001 with Electrons in Solution. Chemistry 2025:e202500859. [PMID: 40260778 DOI: 10.1002/chem.202500859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2025] [Revised: 04/11/2025] [Accepted: 04/21/2025] [Indexed: 04/24/2025]
Abstract
Reactivity toward low-energy electrons (LEE) has been hypothesized as a cause of radio-modifying properties for various molecules. LEE's transient nature, however, prevents the establishment of clear links between initial processes at the sub-ps time scale and the final products of radiolysis. Here, such links are explored for the radio-modifying compound RRx-001 (1-bromoacetyl-3,3-dinitroazetidine). Picosecond pulse radiolysis demonstrates the high scavenging capacity of the molecule for secondary quasi-free and solvated electrons forming stable parent anions confirmed by studies of microsolvated RRx-001 in clusters. The anions decay either via auto-detachment of an electron or dissociate involving hydrogen transfer from solvent, resulting in NO2 and 1-(bromoacetyl)-3-nitroazetidine. Surprisingly, no Br dissociation is observed despite its high electron affinity. We assign this behavior to the "inaccessibility" of sigma virtual states for electrons in the solvent, which can be of a general nature.
Collapse
Affiliation(s)
- Barbora Sedmidubská
- J. Heyrovský Institute of Physical Chemistry of the CAS, Dolejškova 3, Prague, 182223, Czech Republic
- Institut de Chimie Physique UMR 8000, CNRS/Université Paris-Saclay, Bâtiment 349, Orsay, 91405, France
- Department of Nuclear Chemistry, Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague, Břehová 7, Prague, 11519, Czech Republic
| | - Sergey Denisov
- Institut de Chimie Physique UMR 8000, CNRS/Université Paris-Saclay, Bâtiment 349, Orsay, 91405, France
| | - Mehran Mostafavi
- Institut de Chimie Physique UMR 8000, CNRS/Université Paris-Saclay, Bâtiment 349, Orsay, 91405, France
| | - Stephan Denifl
- Universität Innsbruck, Institut für Ionenphysik und Angewandte Physik, Technikerstraße 25, Innsbruck, 6020, Austria
- Center for Molecular Biosciences Innsbruck, Universität Innsbruck, Technikerstraße 25, Innsbruck, A-6020, Austria
| | - Fahrad Izadi
- Universität Innsbruck, Institut für Ionenphysik und Angewandte Physik, Technikerstraße 25, Innsbruck, 6020, Austria
- Department of Chemistry and Biochemistry, Texas State University, San Marcos, TX, 78666, USA
| | - Milan Ončák
- Universität Innsbruck, Institut für Ionenphysik und Angewandte Physik, Technikerstraße 25, Innsbruck, 6020, Austria
| | - Thomas F M Luxford
- J. Heyrovský Institute of Physical Chemistry of the CAS, Dolejškova 3, Prague, 182223, Czech Republic
| | - David Chvátil
- Department of Accelerators, Nuclear Physics Institute of the CAS, Rez, 25068, Czech Republic
| | - Jiří Pinkas
- J. Heyrovský Institute of Physical Chemistry of the CAS, Dolejškova 3, Prague, 182223, Czech Republic
| | - Jaroslav Kočišek
- J. Heyrovský Institute of Physical Chemistry of the CAS, Dolejškova 3, Prague, 182223, Czech Republic
| |
Collapse
|
2
|
Tiefenthaler L, Scheier P, Erdmann E, Aguirre NF, Díaz-Tendero S, Luxford TFM, Kočišek J. Non-ergodic fragmentation upon collision-induced activation of cysteine-water cluster cations. Phys Chem Chem Phys 2023; 25:5361-5371. [PMID: 36647750 PMCID: PMC9930733 DOI: 10.1039/d2cp04172c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Accepted: 10/20/2022] [Indexed: 01/18/2023]
Abstract
Cysteine-water cluster cations Cys(H2O)3,6+ and Cys(H2O)3,6H+ are assembled in He droplets and probed by tandem mass spectrometry with collision-induced activation. Benchmark experimental data for this biologically important system are complemented with theory to elucidate the details of the collision-induced activation process. Experimental energy thresholds for successive release of water are compared to water dissociation energies from DFT calculations showing that clusters do not only fragment exclusively by sequential emission of single water molecules but also by the release of small water clusters. Release of clustered water is observed also in the ADMP (atom centered density matrix propagation) molecular dynamics model of small Cys(H2O)3+ and Cys(H2O)3H+ clusters. For large clusters Cys(H2O)6+ and Cys(H2O)6H+ the less computationally demanding statistical Microcanonical Metropolis Monte-Carlo method (M3C) is used to model the experimental fragmentation patterns. We are able to detail the energy redistribution in clusters upon collision activation. In the present case, about two thirds of the collision energy redistribute via an ergodic process, while the remaining one third is transferred into a non-ergodic channel leading to ejection of a single water molecule from the cluster. In contrast to molecular fragmentation, which can be well described by statistical models, modelling of collision-induced activation of weakly bound clusters requires inclusion of non-ergodic processes.
Collapse
Affiliation(s)
- Lukas Tiefenthaler
- Institute for Ion Physics and Applied Physics, University of Innsbruck, Austria.
| | - Paul Scheier
- Institute for Ion Physics and Applied Physics, University of Innsbruck, Austria.
| | - Ewa Erdmann
- Faculty of Applied Physics and Mathematics, Gdansk University of Technology, Narutowicza 11/12, 80-233 Gdansk, Poland
- Departamento de Química, Universidad Autónoma de Madrid, 28049, Madrid, Spain.
| | - Néstor F Aguirre
- Software for Chemistry and Materials (SCM), Amsterdam, The Netherlands
| | - Sergio Díaz-Tendero
- Departamento de Química, Universidad Autónoma de Madrid, 28049, Madrid, Spain.
- Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Institute for Advanced Research in ChemicalSciences (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Thomas F M Luxford
- J. Heyrovský Institute of Physical Chemistry v.v.i., The Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czechia.
| | - Jaroslav Kočišek
- J. Heyrovský Institute of Physical Chemistry v.v.i., The Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czechia.
| |
Collapse
|
3
|
Deneva V, Slavova S, Kumanova A, Vassilev N, Nedeltcheva-Antonova D, Antonov L. Favipiravir-Tautomeric and Complexation Properties in Solution. Pharmaceuticals (Basel) 2022; 16:ph16010045. [PMID: 36678542 PMCID: PMC9864296 DOI: 10.3390/ph16010045] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 12/16/2022] [Accepted: 12/23/2022] [Indexed: 12/31/2022] Open
Abstract
The tautomeric properties of favipiravir were investigated experimentally for the first time by using molecular spectroscopy (UV-Vis absorption, fluorescence and NMR), as well as DFT quantum-chemical calculations. According to the obtained results, the enol tautomer is substantially more stable in most of the organic solvents. In the presence of water, a keto form appears to be favored due to the specific solute-solvent interactions. Upon the addition of alkaline-earth-metal ions, deprotonation and complexation occurred simultaneously, giving the formation of 2 : 1 ligand : metal complexes. According to the theoretical simulations, the metal ion is captured between the carbonyl groups as a result of the size-fit effect.
Collapse
Affiliation(s)
- Vera Deneva
- Institute of Electronics, Bulgarian Academy of Sciences, 1784 Sofia, Bulgaria
- Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria
- Correspondence: (V.D.); (L.A.)
| | - Sofia Slavova
- Institute of Electronics, Bulgarian Academy of Sciences, 1784 Sofia, Bulgaria
- Institute of General and Inorganic Chemistry, Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria
| | - Alina Kumanova
- Institute of Electronics, Bulgarian Academy of Sciences, 1784 Sofia, Bulgaria
| | - Nikolay Vassilev
- Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria
| | - Daniela Nedeltcheva-Antonova
- Institute of Electronics, Bulgarian Academy of Sciences, 1784 Sofia, Bulgaria
- Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria
| | - Luidmil Antonov
- Institute of Electronics, Bulgarian Academy of Sciences, 1784 Sofia, Bulgaria
- Correspondence: (V.D.); (L.A.)
| |
Collapse
|
4
|
Lietard A, Verlet JRR. Effect of Microhydration on the Temporary Anion States of Pyrene. J Phys Chem Lett 2022; 13:3529-3533. [PMID: 35420036 PMCID: PMC9084602 DOI: 10.1021/acs.jpclett.2c00523] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 03/28/2022] [Indexed: 06/14/2023]
Abstract
The influence of incremental hydration (≤4) on the electronic resonances of the pyrene anion is studied using two-dimensional photoelectron spectroscopy. The photoexcitation energies of the resonances do not change; therefore, from the anion's perspective, the resonances remain the same, but from the neutral's perspective of the electron-molecule reaction, the resonances decrease in energy by the binding energy of the water molecules. The autodetachment of the resonances shows that hydration has very little effect, showing that even the dynamics of most of the resonances are not impacted by hydration. Two specific resonances do show changes that are explained by the closing of specific autodetachment channels. The lowest-energy resonance leads to efficient electron capture as observed through thermionic emission and evaporation of water molecules (dissociative electron attachment). The implications of low-energy electron capture in dense molecular interstellar clouds are discussed.
Collapse
|