Ultrafast molecular dynamics in ionized 1- and 2-propanol: from simple fragmentation to complex isomerization and roaming mechanisms

Ultrafast fragmentation of highly-excited doubly-ionized deoxyribose: role of the liquid water environment

Ab initio molecular dynamics simulations are used to investigate the fragmentation dynamics following the double ionization of 2-deoxy-D-ribose (DR), a major component in the DNA chain. Different ionization scenarios are considered to provide a complete picture. First focusing on isolated DR2+, fragmentation patterns are determined for the ground electronic state, adding randomly distributed excitation energy to the nuclei. These patterns differ for the two isomers studied. To compare thermal and electronic excitation effects, Ehrenfest dynamics are also performed, allowing to remove the two electrons from selected molecular orbitals. Two intermediate-energy orbitals, localized on the carbon chain, were selected. The dissociation pattern corresponds to the most frequent pattern obtained when adding thermal excitation. On the contrary, targeting the four deepest orbitals, localized on the oxygen atoms, leads to selective ultrafast C-O and/or O-H bond dissociation. To probe the role of environment, a system consisting of a DR molecule embedded in liquid water is then studied. The two electrons are removed from either the DR or the water molecules directly linked to the sugar through hydrogen bonds. Although the dynamics onset is similar to that of isolated DR when removing the same deep orbitals localized on the sugar oxygen atoms, the subsequent fragmentation patterns differ. Sugar damage also occurs following the Coulomb explosion of neighboring H2O2+ molecules due to interaction with the emitted O or H atoms.

Tracing Photoinduced Hydrogen Migration in Alcohol Dications from Time-Resolved Molecular-Frame Photoelectron Angular Distributions

The recent implementation of attosecond and few-femtosecond X-ray pump/X-ray probe schemes in large-scale free-electron laser facilities has opened the way to visualize fast nuclear dynamics in molecules with unprecedented temporal and spatial resolution. Here, we present the results of theoretical calculations showing how polarization-averaged molecular-frame photoelectron angular distributions (PA-MFPADs) can be used to visualize the dynamics of hydrogen migration in methanol, ethanol, propanol, and isopropyl alcohol dications generated by X-ray irradiation of the corresponding neutral species. We show that changes in the PA-MFPADs with the pump-probe delay as a result of intramolecular photoelectron diffraction carry information on the dynamics of hydrogen migration in real space. Although visualization of this dynamics is more straightforward in the smaller systems, methanol and ethanol, one can still recognize the signature of that motion in propanol and isopropyl alcohol and assign a tentative path to it. A possible pathway for a corresponding experiment requires an angularly resolved detection of photoelectrons in coincidence with molecular fragment ions used to define a molecular frame of reference. Such studies have become, in principle, possible since the first XFELs with sufficiently high repetition rates have emerged. To further support our findings, we provide experimental evidence of H migration in ethanol-OD from ion-ion coincidence measurements performed with synchrotron radiation.

Initial-site characterization of hydrogen migration following strong-field double-ionization of ethanol

An essential problem in photochemistry is understanding the coupling of electronic and nuclear dynamics in molecules, which manifests in processes such as hydrogen migration. Measurements of hydrogen migration in molecules that have more than two equivalent hydrogen sites, however, produce data that is difficult to compare with calculations because the initial hydrogen site is unknown. We demonstrate that coincidence ion-imaging measurements of a few deuterium-tagged isotopologues of ethanol can determine the contribution of each initial-site composition to hydrogen-rich fragments following strong-field double ionization. These site-specific probabilities produce benchmarks for calculations and answer outstanding questions about photofragmentation of ethanol dications; e.g., establishing that the central two hydrogen atoms are 15 times more likely to abstract the hydroxyl proton than a methyl-group proton to form H[Formula: see text] and that hydrogen scrambling, involving the exchange of hydrogen between different sites, is important in H2O+ formation. The technique extends to dynamic variables and could, in principle, be applied to larger non-cyclic hydrocarbons.

Molecular photodissociation dynamics revealed by Coulomb explosion imaging

Coulomb explosion imaging (CEI) methods are finding ever-growing use as a means of exploring and distinguishing the static stereo-configurations of small quantum systems (molecules, clusters, etc). CEI experiments initiated by ultrafast (femtosecond-duration) laser pulses also allow opportunities to track the time-evolution of molecular structures, and thereby advance understanding of molecular fragmentation processes. This Perspective illustrates two emerging families of dynamical studies. 'One-colour' studies (employing strong field ionisation driven by intense near infrared or single X-ray or extreme ultraviolet laser pulses) afford routes to preparing multiply charged molecular cations and exploring how their fragmentation progresses from valence-dominated to Coulomb-dominated dynamics with increasing charge and how this evolution varies with molecular size and composition. 'Two-colour' studies use one ultrashort laser pulse to create electronically excited neutral molecules (or monocations), whose structural evolution is then probed as a function of pump-probe delay using an ultrafast ionisation pulse along with time and position-sensitive detection methods. This latter type of experiment has the potential to return new insights into not just molecular fragmentation processes but also charge transfer processes between moieties separating with much better defined stereochemical control than in contemporary ion-atom and ion-molecule charge transfer studies.

Dynamics of Hydrogen Bond Breaking Induced by Outer-Valence Intermolecular Coulombic Decay

The photoexcitation of weakly bound complexes can lead to several decay pathways, depending on the nature of the potential energy surfaces. Upon excitation of a chromophore in a weakly bound complex, ionization of its neighbor upon energy transfer can occur due to a unique relaxation process known as intermolecular Coulombic decay (ICD), a phenomenon of renewed focus owing to its relevance in biological systems. Herein, we report the evidence for outer-valence ICD induced by multiphoton excitation by near-ultraviolet radiation of 4.4 eV photons, hitherto unknown in molecular systems. In the binary complexes of 2,6-difluorophenylacetylene with aliphatic amines, a resonant two-photon excitation localized on the 2,6-difluorophenylacetylene chromophore results in the formation of an amine cation following an outer-valence ICD process. The unique trends in experimentally observed translational energy distribution profiles of the amine cations following hydrogen bond dissociation, analyzed with the help of electronic structure and ab initio molecular dynamics calculations, revealed the presence of a delicate interplay of roaming dynamics, methyl-rotor dynamics, and binding energy.

Ultrafast Roaming Mechanisms in Ethanol Probed by Intense Extreme Ultraviolet Free-Electron Laser Radiation: Electron Transfer versus Proton Transfer

Ultrafast H₂⁺ and H₃⁺ formation from ethanol is studied using pump-probe spectroscopy with an extreme ultraviolet (XUV) free-electron laser. The first pulse creates a dication, triggering H₂ roaming that leads to H₂⁺ and H₃⁺ formation, which is disruptively probed by a second pulse. At photon energies of 28 and 32 eV, the ratio of H₂⁺ to H₃⁺ increases with time delay, while it is flat at a photon energy of 70 eV. The delay-dependent effect is ascribed to a competition between electron and proton transfer. High-level quantum chemistry calculations show a flat potential energy surface for H₂ formation, indicating that the intermediate state may have a long lifetime. The ab initio molecular dynamics simulation confirms that, in addition to the direct emission, a small portion of H₂ undergoes a roaming mechanism that leads to two competing pathways: electron transfer from H₂ to C₂H₄O²⁺ and proton transfer from C₂H₄O²⁺ to H₂.

Hydrogen migration in inner-shell ionized halogenated cyclic hydrocarbons

We have studied the fragmentation of the brominated cyclic hydrocarbons bromocyclo-propane, bromocyclo-butane, and bromocyclo-pentane upon Br(3d) and C(1s) inner-shell ionization using coincidence ion momentum imaging. We observe a substantial yield of CH₃⁺ fragments, whose formation requires intramolecular hydrogen (or proton) migration, that increases with molecular size, which contrasts with prior observations of hydrogen migration in linear hydrocarbon molecules. Furthermore, by inspecting the fragment ion momentum correlations of three-body fragmentation channels, we conclude that CH_x⁺ fragments (with x = 0, …, 3) with an increasing number of hydrogens are more likely to be produced via sequential fragmentation pathways. Overall trends in the molecular-size-dependence of the experimentally observed kinetic energy releases and fragment kinetic energies are explained with the help of classical Coulomb explosion simulations.

Multi-mass velocity map imaging study of the 805 nm strong field ionization of CF3I

Multi-mass velocity map imaging studies of charged fragments formed by near infrared strong field ionization together with covariance map image analysis offer a new window through which to explore the dissociation dynamics of several different highly charged parent cations, simultaneously - as demonstrated here for the case of CF₃I^Z+ cations with charges Z ranging from 1 to at least 5. Previous reports that dissociative ionization of CF₃I⁺ cations yields CF₃⁺, I⁺ and CF₂I⁺ fragment ions are confirmed, and some of the CF₃⁺ fragments are deduced to undergo secondary loss of one or more neutral F atoms. Covariance map imaging confirms the dominance of CF₃⁺ + I⁺ products in the photodissociation of CF₃I²⁺ cations and, again, that some of the primary CF₃⁺ photofragments can shed one or more F atoms. Rival charge symmetric dissociation pathways to CF₂I⁺ + F⁺ and to IF⁺ + CF₂⁺ products and charge asymmetric dissociations to CF₃ + I²⁺ and CF₂I²⁺ + F products are all also identified. The findings for parent cations with Z ≥ 3 are wholly new. In all cases, the fragment recoil velocity distributions imply dissociation dynamics in which coulombic repulsive forces play a dominant role. The major photoproducts following dissociation of CF₃I³⁺ ions are CF₃⁺ and I²⁺, with lesser contributions from the rival CF₂I²⁺ + F⁺ and CF₃²⁺ + I⁺ channels. The CF₃²⁺ fragment ion images measured at higher incident intensities show a faster velocity sub-group consistent with their formation in tandem with I²⁺ fragments, from photodissociation of CF₃I⁴⁺ parent ions. The measured velocity distributions of the I³⁺ fragment ions contain features attributable to CF₃I⁵⁺ photodissociation to CF₃²⁺ + I³⁺ and the images of fragments with mass to charge (m/z) ratio ∼31 show formation of I⁴⁺ products that must originate from parent ions with yet higher Z.

Sequential and concerted C-C and C-O bond dissociation in the Coulomb explosion of 2-propanol

We study the competing mechanisms in the Coulomb explosion of 2-propanol dication, formed by an ultrafast EUV pulse. Over 20 product channels are identified and characterized using 3D coincidence imaging of the ionic fragments. The momentum correlations in the three-body fragmentation channels provide evidence for a dominant sequential mechanism, starting with cleavage of a C-C bond, ejecting and cations, followed by a secondary fragmentation of the hydroxyethyl cation that can be delayed for up to a microsecond after ionization. C-O bond dissociation channels are less frequent, involving proton-transfer and double-proton transfer, forming and products respectively and exhibiting mixed sequential and concerted character. These results can be explained by the high potential barrier for the C-O bond dissociation seen in our ab initio quantum chemical calculations. We also observe coincident COH+ + C2Hn+ ions, suggesting exotic structural rearrangements, starting from the Frank-Condon geometry of the neutral 2-propanol system. Remarkably, the relative yield of the product is suppressed compared with methanol and alkene dications. Ab initio potentials and ground-state molecular dynamics simulations show that a rapid and direct C-C bond cleavage dominates the Coulomb explosion process, leaving no time for roaming which is a necessary precursor to the formation.

Two- and three-body fragmentation of multiply charged tribromomethane by ultrafast laser pulses

This article provides mechanistic insight into the two- and three-body fragmentation dynamics of CHBr3 after strong-field ionization and discusses the possible isomerization of CHBr3 to BrCHBr–Br (iso-CHBr3) prior to the fragmentation.