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Paul D, Sun BJ, He C, Yang Z, Goettl SJ, Yang T, Zhang BY, Chang AHH, Kaiser RI. Competing Si 2CH 4-H 2 and SiCH 2-SiH 4 Channels in the Bimolecular Reaction of Ground-State Atomic Carbon (C( 3P j)) with Disilane (Si 2H 6, X 1A 1g) under Single Collision Conditions. J Phys Chem A 2023; 127:1901-1908. [PMID: 36790335 DOI: 10.1021/acs.jpca.2c08417] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
Abstract
The bimolecular gas-phase reaction of ground-state atomic carbon (C(3Pj)) with disilane (Si2H6, X1A1g) was explored under single-collision conditions in a crossed molecular beam machine at a collision energy of 36.6 ± 4.5 kJ mol-1. Two channels were observed: a molecular hydrogen elimination plus Si2CH4 (reaction 1) pathway and a silane loss channel along with the formation of SiCH2 (reaction 2), with branching ratios of 20 ± 3 and 80 ± 4%, respectively. Both channels involved indirect scattering dynamics via long-lived Si2CH6 reaction intermediate(s); the latter eject molecular hydrogen and silane in "molecular" elimination channels within the rotational plane of the fragmenting intermediate nearly perpendicularly to the total angular momentum vector. These molecular elimination channels are associated with tight exit transition states as reflected in a significant electron rearrangement as visible from the chemical bonding in the light reaction products molecular hydrogen and silane. Once these hydrogenated silicon-carbide clusters are formed within the inner envelope of carbon stars such as of IRC + 10216, the stellar wind can drive both Si2CH4 and SiCH2 to the outside sections of the envelope, where they can be photolyzed. This is of particular importance to unravel potential formation pathways to disilicon monocarbide (Si2C) observed recently in the circumstellar shell of IRC + 10216.
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Affiliation(s)
- Dababrata Paul
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, Hawaii 96822, United States
| | - Bing-Jian Sun
- Department of Chemistry, National Dong Hwa University, Shoufeng, Hualien 974, Taiwan
| | - Chao He
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, Hawaii 96822, United States
| | - Zhenghai Yang
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, Hawaii 96822, United States
| | - Shane J Goettl
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, Hawaii 96822, United States
| | - Tao Yang
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, Hawaii 96822, United States
| | - Bo-Yu Zhang
- Department of Chemistry, National Dong Hwa University, Shoufeng, Hualien 974, Taiwan
| | - Agnes H H Chang
- Department of Chemistry, National Dong Hwa University, Shoufeng, Hualien 974, Taiwan
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, Hawaii 96822, United States
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2
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He C, Kaiser RI, Lu W, Ahmed M, Reyes Y, Wnuk SF, Mebel AM. Exotic Reaction Dynamics in the Gas-Phase Preparation of Anthracene (C 14H 10) via Spiroaromatic Radical Transients in the Indenyl-Cyclopentadienyl Radical-Radical Reaction. J Am Chem Soc 2023; 145:3084-3091. [PMID: 36701838 DOI: 10.1021/jacs.2c12045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
The gas-phase reaction between the 1-indenyl (C9H7•) radical and the cyclopentadienyl (C5H5•) radical has been investigated for the first time using synchrotron-based mass spectrometry coupled with a pyrolytic reactor. Soft photoionization with tunable vacuum ultraviolet photons afforded for the isomer-selective identification of the production of phenanthrene, anthracene, and benzofulvalene (C14H10). The classical theory prevalent in the literature proposing that radicals combine only at their specific radical centers is challenged by our discovery of an unusual reaction pathway that involves a barrierless combination of a resonantly stabilized hydrocarbon radical with an aromatic radical at the carbon atom adjacent to the traditional C1 radical center; this unconventional addition is followed by substantial isomerization into phenanthrene and anthracene via a category of exotic spiroaromatic intermediates. This result leads to a deeper understanding of the evolution of the cosmic carbon budget and provides new methodologies for the bottom-up synthesis of unique spiroaromatics that may be relevant for the synthesis of more complex aromatic carbon skeletons in deep space.
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Affiliation(s)
- Chao He
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, Hawaii 96822, United States
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, Hawaii 96822, United States
| | - Wenchao Lu
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Yahaira Reyes
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States
| | - Stanislaw F Wnuk
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States
| | - Alexander M Mebel
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States
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Yang Z, Sun BJ, He C, Li JQ, Chang AHH, Kaiser RI. Gas-Phase Preparation of 1-Germavinylidene (H 2CGe; X 1A 1), the Isovalent Counterpart of Vinylidene (H 2CC; X 1A 1), via Non-adiabatic Dynamics through the Elementary Reaction of Ground State Atomic Carbon (C; 3P) with Germane (GeH 4; X 1A 1). J Phys Chem Lett 2023; 14:430-436. [PMID: 36622768 DOI: 10.1021/acs.jpclett.2c03749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
1-Germavinylidene (H2CGe; X1A1), the germanium analogue of vinylidene (H2CC; X1A1), was prepared via a directed gas-phase synthesis through the bimolecular reaction of ground state atomic carbon (C; 3P) with germane (GeH4; X1A1) under single-collision conditions. The reaction commences with the barrierless insertion of carbon into the Ge-H bond followed by intersystem crossing from the triplet to singlet surface and migration of atomic hydrogen to germylene (H2GeCH2), which predominantly decomposes via molecular hydrogen loss to 1-germavinylidene (H2CGe; X1A1). Therefore, the replacement of a single carbon atom in the acetylene-vinylidene system by germanium critically impacts the chemical bonding, molecular structure, and thermodynamic stability of the carbene-type structures favoring 1-germavinylidene (H2CGe) over germyne (HGeCH) by 160 kJ mol-1. Hence, the carbon-germane system represents a benchmark in the exploration of the chemistries of main group 14 elements with germanium-bearing systems showing few similarities with the isovalent carbon system.
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Affiliation(s)
- Zhenghai Yang
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, Hawaii 96822, United States
| | - Bing-Jian Sun
- Department of Chemistry, National Dong Hwa University, Shoufeng, Hualien 974, Taiwan
| | - Chao He
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, Hawaii 96822, United States
| | - Jin-Qi Li
- Department of Chemistry, National Dong Hwa University, Shoufeng, Hualien 974, Taiwan
| | - Agnes H H Chang
- Department of Chemistry, National Dong Hwa University, Shoufeng, Hualien 974, Taiwan
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, Hawaii 96822, United States
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Plamper D, Fujioka K, Schmidt S, Sun R, Weitzel KM. Ion-molecule reactions in the HBr + + HCl (DCl) system: a combined experimental and theoretical study. Phys Chem Chem Phys 2023; 25:2629-2640. [PMID: 36602406 DOI: 10.1039/d2cp03654a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Reactions in the system HBr+ + HCl (DCl) were investigated inside a guided ion-beam apparatus under single-collision conditions. In the HBr+ + HCl system, the proton transfer (PTHCl) and charge transfer (CT) are observable. In the HBr+ + DCl system, proton transfer (PTDCl) and deuterium abstraction (DA) are accessible. The cross sections for all reaction channels were measured as a function of the collision energy Ecm and of the rotational energy Erot of the ion. The rotationally state-selective formation of the ionic species was realized by resonance-enhanced multiphoton ionization (REMPI). As expected, the PT-channels are exothermic, and the cross section decreases with increasing collision energy for both PTHCl and PTDCl. The cross section for DA also decreases with an increasing Ec.m.. In the case of a considerably endothermic CT-channel, the reaction efficiency increases with increasing collision energy but has an overall much smaller cross sections compared to PT and DA reactions. Both PT-reactions are hindered by ion rotation, whereas DA is independent of Erot. The CT-channel shows a rotational enhancement near the thermochemical threshold. The experiment is complemented by theory, using ab initio molecular dynamics (AIMD, also known as direct dynamics) simulations and taking the rotational enhancement of HBr+ into account. The simulations show good agreement with the experimental results. The cross section of PTHCl decreases with an increase of the rotational energy. Furthermore, the absolute cross sections are in the same order of magnitude. The CT channel shows no reactions in the simulation.
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Affiliation(s)
- Dominik Plamper
- Philipps-Universität Marburg, Fachbereich Chemie, 35032 Marburg, Germany.
| | - Kazuumi Fujioka
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, Hawaii 96822, USA.
| | - Sebastian Schmidt
- Philipps-Universität Marburg, Fachbereich Chemie, 35032 Marburg, Germany.
| | - Rui Sun
- Department of Chemistry, University of Hawai'i at Manoa, Honolulu, Hawaii 96822, USA.
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Liu J, He X. Recent advances in quantum fragmentation approaches to complex molecular and condensed‐phase systems. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Jinfeng Liu
- Department of Basic Medicine and Clinical Pharmacy China Pharmaceutical University Nanjing China
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, Shanghai Frontiers Science Center of Molecule Intelligent Syntheses, School of Chemistry and Molecular Engineering East China Normal University Shanghai China
| | - Xiao He
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, Shanghai Frontiers Science Center of Molecule Intelligent Syntheses, School of Chemistry and Molecular Engineering East China Normal University Shanghai China
- New York University‐East China Normal University Center for Computational Chemistry New York University Shanghai Shanghai China
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Krikunova LI, Nikolayev AA, Porfiriev DP, Mebel AM. Reaction of propionitrile with methylidyne: A theoretical study. J CHIN CHEM SOC-TAIP 2022. [DOI: 10.1002/jccs.202200461] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Affiliation(s)
- Lubov I. Krikunova
- Samara National Research University Samara Russia
- Lebedev Physical Institute Samara Branch Samara Russia
| | - Anatoliy A. Nikolayev
- Samara National Research University Samara Russia
- Lebedev Physical Institute Samara Branch Samara Russia
| | - Denis P. Porfiriev
- Samara National Research University Samara Russia
- Lebedev Physical Institute Samara Branch Samara Russia
| | - Alexander M. Mebel
- Department of Chemistry and Biochemistry Florida International University Miami Florida USA
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7
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The Accuracy of Semi-Empirical Quantum Chemistry Methods on Soot Formation Simulation. Int J Mol Sci 2022; 23:ijms232113371. [DOI: 10.3390/ijms232113371] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Revised: 10/29/2022] [Accepted: 10/30/2022] [Indexed: 11/06/2022] Open
Abstract
Soot molecules are hazardous compounds threatening human health. Computational chemistry provides efficient tools for studying them. However, accurate quantum chemistry calculation is costly for the simulation of large-size soot molecules and high-throughput calculations. Semi-empirical (SE) quantum chemistry methods are optional choices for balancing computational costs. In this work, we validated the performances of several widely used SE methods in the description of soot formation. Our benchmark study focuses on, but is not limited to, the validation of the performances of SE methods on reactive and non-reactive MD trajectory calculations. We also examined the accuracy of SE methods of predicting soot precursor structures and energy profiles along intrinsic reaction coordinate(s) (IRC). Finally, we discussed the spin density predicted by SE methods. The SE methods validated include AM1, PM6, PM7, GFN2-xTB, DFTB2, with or without spin-polarization, and DFTB3. We found that the shape of MD trajectory profiles, the relative energy, and molecular structures predicted by SE methods are qualitatively correct. We suggest that SE methods can be used in massive reaction soot formation event sampling and primary reaction mechanism generation. Yet, they cannot be used to provide quantitatively accurate data, such as thermodynamic and reaction kinetics ones.
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Galimova GR, Mebel AM, Goettl SJ, Yang Z, Kaiser RI. A crossed molecular beams and computational study on the unusual reactivity of banana bonds of cyclopropane (c-C 3H 6; ) through insertion by ground state carbon atoms (C( 3P j)). Phys Chem Chem Phys 2022; 24:22453-22463. [PMID: 36102937 DOI: 10.1039/d2cp03293g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The mechanism and chemical dynamics of the reaction of ground electronic state atomic carbon C(3Pj) with cyclopropane c-C3H6 have been explored by combining crossed molecular beams experiments with electronic structure calculations of the pertinent triplet C4H6 potential energy surface and statistical computations of product branching ratios under single-collision conditions. The experimental findings suggest that the reaction proceeds via indirect scattering dynamics through triplet C4H6 reaction intermediate(s) leading to C4H5 product(s) plus atomic hydrogen via a tight exit transition state, with the overall reaction exoergicity evaluated as 231 ± 52 kJ mol-1. The calculations indicate that C(3Pj) can easily insert into one of the three equivalent C-C 'banana' bonds of cyclopropane overcoming a low barrier of only 2 kJ mol-1 following the formation of a van der Waals reactant complex stabilized by 15 kJ mol-1. The carbon atom insertion into one of the six C-H bonds is also feasible via a slightly higher barrier of 5 kJ mol-1. These results highlight an unusual reactivity of cyclopropane's banana C-C bonds, which behave more like unsaturated C-C bonds with a π-character than saturated σ C-C bonds, which are known to be generally unreactive toward the ground electronic state atomic carbon such as in ethane (C2H6). The statistical theory predicts the overall product branching ratios at the experimental collision energy as 50% for 1-butyn-4-yl, 33% for 1,3-butadien-2-yl, i-C4H5, and 11% for 1,3-butadien-1-yl, n-C4H5, with i-C4H5 (230 kJ mol-1 below the reactants) favored by the C-C insertion providing the best match with the experimentally observed reaction exoergicity. The C(3Pj) + c-C3H6 reaction is predicted to be a source of C4H5 radicals under the conditions where its low entrance barriers can be overcome, such as in planetary atmospheres or in circumstellar envelopes but not in cold molecular clouds. Both i- and n-C4H5 can further react with acetylene eventually producing the first aromatic ring and hence, the reaction of the atomic carbon with c-C3H6 can be considered as an initial step toward the formation of benzene.
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Affiliation(s)
- Galiya R Galimova
- Department of Chemistry and Biochemistry, Florida International University, Miami, FL 33199, USA.
| | - Alexander M Mebel
- Department of Chemistry and Biochemistry, Florida International University, Miami, FL 33199, USA.
| | - Shane J Goettl
- Department of Chemistry, University of Hawai'i at Mānoa, Honolulu, HI 96822, USA.
| | - Zhenghai Yang
- Department of Chemistry, University of Hawai'i at Mānoa, Honolulu, HI 96822, USA.
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawai'i at Mānoa, Honolulu, HI 96822, USA.
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Fujioka K, Weitzel KM, Sun R. The Potential Energy Profile of the HBr + + HCl Bimolecular Collision. J Phys Chem A 2022; 126:1465-1474. [PMID: 35196015 DOI: 10.1021/acs.jpca.1c08300] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Recently, the HBr+ + HCl bimolecular reaction has been exploited by guided ion beam studies to probe the effect of rotational excitations and collision energies on the dynamics of the ion-molecule reactions. The current manuscript employs high-level ab initio calculations and reports the potential energy of pathways leading to various products, including HBr + HCl+, H2Cl+ + Br, H2Br+ + Cl, and H2 + BrCl+. The study shows that the intermediates involved in this reaction are connected by low-lying transition states, thus frequent isomerizations and diverse products are expected. Further, this manuscript screens the performance of 192 different combinations of computationally efficient methods and basis sets in order to identify the optimal quantum chemical method for further dynamics simulations.
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Affiliation(s)
- Kazuumi Fujioka
- Department of Chemistry, University of Hawai'i at Ma̅noa, Honolulu, Hawaii 96822, United States
| | | | - Rui Sun
- Department of Chemistry, University of Hawai'i at Ma̅noa, Honolulu, Hawaii 96822, United States
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He C, Yang Z, Doddipatla S, Thomas AM, Kaiser RI, Galimova GR, Mebel AM, Fujioka K, Sun R. Directed gas phase preparation of ethynylallene (H 2CCCHCCH; X 1A′) via the crossed molecular beam reaction of the methylidyne radical (CH; X 2Π) with vinylacetylene (H 2CCHCCH; X 1A′). Phys Chem Chem Phys 2022; 24:26499-26510. [DOI: 10.1039/d2cp04081f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
The elementary reaction of the methylidyne radical with vinylacetylene leading to the predominant formation of ethynylallene and atomic hydrogen via indirect scattering dynamics.
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Affiliation(s)
- Chao He
- Department of Chemistry, University of Hawai‘i at Mānoa, Honolulu, HI 96822, USA
| | - Zhenghai Yang
- Department of Chemistry, University of Hawai‘i at Mānoa, Honolulu, HI 96822, USA
| | - Srinivas Doddipatla
- Department of Chemistry, University of Hawai‘i at Mānoa, Honolulu, HI 96822, USA
| | - Aaron M. Thomas
- Department of Chemistry, University of Hawai‘i at Mānoa, Honolulu, HI 96822, USA
| | - Ralf I. Kaiser
- Department of Chemistry, University of Hawai‘i at Mānoa, Honolulu, HI 96822, USA
| | - Galiya R. Galimova
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, USA
| | - Alexander M. Mebel
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, USA
| | - Kazuumi Fujioka
- Department of Chemistry, University of Hawai‘i at Mānoa, Honolulu, HI 96822, USA
| | - Rui Sun
- Department of Chemistry, University of Hawai‘i at Mānoa, Honolulu, HI 96822, USA
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