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Bergman NP, Bergquist J, Hedeland M, Palmblad M. Text Mining and Computational Chemistry Reveal Trends in Applications of Laser Desorption/Ionization Techniques to Small Molecules. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2024; 35:2507-2515. [PMID: 39308355 PMCID: PMC11457301 DOI: 10.1021/jasms.4c00293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Revised: 09/05/2024] [Accepted: 09/13/2024] [Indexed: 10/03/2024]
Abstract
Continued development of laser desorption/ionization (LDI) since its inception in the 1960s has produced an explosion of soft ionization techniques, where ionization is assisted by the physical or chemical properties of a structure or matrix. While many of these techniques have primarily been used to ionize large biomolecules, including proteins, some have recently seen increasing applications to small molecules such as pharmaceuticals. Small molecules pose particular challenges for LDI techniques, including interference from the matrix or support in the low mass range. To investigate trends in the application of soft LDI techniques to small molecules, we combined text mining and computational chemistry, looking specifically at matrix substances, analyte properties, and the research domain. In addition to making visible the history of LDI techniques, the results may inform the choice of method and suggest new avenues of method development. All software and collected data are freely available on GitHub (https://github.com/ReinV/SCOPE), VOSviewer (https://www.vosviewer.com), and OSF (https://osf.io/zkmua/).
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Affiliation(s)
- Nina P. Bergman
- Analytical
Chemistry and Neurochemistry, Department of Chemistry−BMC, Uppsala University, SE-75124 Uppsala, Sweden
| | - Jonas Bergquist
- Analytical
Chemistry and Neurochemistry, Department of Chemistry−BMC, Uppsala University, SE-75124 Uppsala, Sweden
| | - Mikael Hedeland
- Analytical
Pharmaceutical Chemistry, Department of Medicinal Chemistry−BMC, Uppsala University, SE-75123 Uppsala, Sweden
| | - Magnus Palmblad
- Center
for Proteomics and Metabolomics, Leiden
University Medical Center, 2300 RC Leiden, The Netherlands
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2
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Zhou C, Liu Y, Li Y, Shi L. Recent advances and prospects in nanomaterials for bacterial sepsis management. J Mater Chem B 2023; 11:10778-10792. [PMID: 37901894 DOI: 10.1039/d3tb02220j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2023]
Abstract
Bacterial sepsis is a life-threatening condition caused by bacteria entering the bloodstream and triggering an immune response, underscoring the importance of early recognition and prompt treatment. Nanomedicine holds promise for addressing sepsis through improved diagnostics, nanoparticle biosensors for detection and imaging, enhanced antibiotic delivery, combating resistance, and immune modulation. However, challenges remain in ensuring safety, regulatory compliance, scalability, and cost-effectiveness before clinical implementation. Further research is needed to optimize design, efficacy, safety, and regulatory strategies for effective utilization of nanomedicines in bacterial sepsis diagnosis and treatment. This review highlights the significant potential of nanomedicines, including improved drug delivery, enhanced diagnostics, and immunomodulation for bacterial sepsis. It also emphasizes the need for further research to optimize design, efficacy, safety profiles, and address regulatory challenges to facilitate clinical translation.
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Affiliation(s)
- Chaoyang Zhou
- Department of Critical Care Medicine, The People's Hospital of Yuhuan, Taizhou, Zhejiang 317600, China.
| | - Yong Liu
- Department of Critical Care Medicine, The People's Hospital of Yuhuan, Taizhou, Zhejiang 317600, China.
- Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325001, China.
| | - Yuanfeng Li
- Department of Critical Care Medicine, The People's Hospital of Yuhuan, Taizhou, Zhejiang 317600, China.
- Translational Medicine Laboratory, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang 325035, China.
| | - Linqi Shi
- Key Laboratory of Functional Polymer Materials of Ministry of Education, Institute of Polymer Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
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Sezgin GC, Tekin YE, Calim B, Celik C, Alrifai W, Temur N, Ildiz N, Ocsoy I. Development of a Colorimetric Urease Test Based on Au NPS Capped with Anthocyanin for the Rapid Detection of Helicobacter pylori through Multiple Readouts. ChemistrySelect 2023; 8. [DOI: 10.1002/slct.202300637] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2023] [Accepted: 07/03/2023] [Indexed: 03/29/2025]
Abstract
AbstractIn this work, we have reported use of anthocyanin capped gold nanoparticles (Ant@Au NPs)‐incorporated colorimetric urease test for rapid, sensitive and economic detection of Helicobacter pylori (H. pylori). This test containing Ant@Au NPs, urea, sodium phosphate buffer (PBS) and sodium azide (NaN3) was prepared at pH 5 with red solution owing to dispersity of Ant@Au NPs, urease enzyme secreted from H. pylori cause production of ammonia (NH3) via hydrolysis of urea, then which makes reaction environment alkaline (pH 8.2). The limit of detection for this Ant@Au NPs based urease test was determined to be to 102 CFU/mL with proportional to increasing incubation time. However, distinct color change was observed with 104 CFU/mL H. pylori suspensions in 15 min. The anthocyanin molecules existing on surface of Ant@Au NPs were easily deprotonated from hydroxyl groups in the alkaline condition, which caused various changes on Ant@Au NPs including quite much negative charges on the surface of Ant@Au NPs analyzed by Zeta potential, aggregation of Ant@Au NPs demonstrated by STEM, DLS and spectrophotometer, and turning the color of test solution to purple evaluated by a naked eye and digital process imaging system.
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Affiliation(s)
- Gulten Can Sezgin
- Department of Gastroenterology, Faculty of Medicine Erciyes University Kayseri 38039 Turkey
| | - Yakub Emre Tekin
- Department of Analytical Chemistry, Faculty of Pharmacy Erciyes University Kayseri 38039 Turkey
| | - Beyza Calim
- Department of Analytical Chemistry, Faculty of Pharmacy Erciyes University Kayseri 38039 Turkey
| | - Cagla Celik
- Pharmacy Services Program, Vocational School of Health Services Hitit University Corum 19000 Turkey
| | - Wardishan Alrifai
- Department of Analytical Chemistry, Faculty of Pharmacy Erciyes University Kayseri 38039 Turkey
| | - Nimet Temur
- Department of Analytical Chemistry, Faculty of Pharmacy Erciyes University Kayseri 38039 Turkey
| | - Nilay Ildiz
- Bandırma Onyedi Eylul University Vocational School of Health Services, Medical Imaging Department 10200 Bandirma Turkey
| | - Ismail Ocsoy
- Department of Analytical Chemistry, Faculty of Pharmacy Erciyes University Kayseri 38039 Turkey
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Sadiq Z, Safiabadi Tali SH, Hajimiri H, Al-Kassawneh M, Jahanshahi-Anbuhi S. Gold Nanoparticles-Based Colorimetric Assays for Environmental Monitoring and Food Safety Evaluation. Crit Rev Anal Chem 2023; 54:2209-2244. [PMID: 36629748 DOI: 10.1080/10408347.2022.2162331] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Recent years have witnessed an exponential increase in the research on gold nanoparticles (AuNPs)-based colorimetric sensors to revolutionize point-of-use sensing devices. Hence, this review is compiled focused on current progress in the design and performance parameters of AuNPs-based sensors. The review begins with the characteristics of AuNPs, followed by a brief explanation of synthesis and functionalization methods. Then, the mechanisms of AuNPs-based sensors are comprehensively explained in two broad categories based on the surface plasmon resonance (SPR) characteristics of AuNPs and their peroxidase-like catalytic properties (nanozyme). SPR-based colorimetric sensors further categorize into aggregation, anti-aggregation, etching, growth-mediated, and accumulation-based methods depending on their sensing mechanisms. On the other hand, peroxidase activity-based colorimetric sensors are divided into two methods based on the expression or inhibition of peroxidase-like activity. Next, the analytes in environmental and food samples are classified as inorganic, organic, and biological pollutants, and recent progress in detection of these analytes are reviewed in detail. Finally, conclusions are provided, and future directions are highlighted. Improving the sensitivity, reproducibility, multiplexing capabilities, and cost-effectiveness for colorimetric detection of various analytes in environment and food matrices will have significant impact on fast testing of hazardous substances, hence reducing the pollution load in environment as well as rendering food contamination to ensure food safety.
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Affiliation(s)
- Zubi Sadiq
- Department of Chemical and Materials Engineering, Gina Cody School of Engineering and Computer Science, Concordia University, Montréal, Québec, Canada
| | - Seyed Hamid Safiabadi Tali
- Department of Chemical and Materials Engineering, Gina Cody School of Engineering and Computer Science, Concordia University, Montréal, Québec, Canada
| | - Hasti Hajimiri
- Department of Chemical and Materials Engineering, Gina Cody School of Engineering and Computer Science, Concordia University, Montréal, Québec, Canada
| | - Muna Al-Kassawneh
- Department of Chemical and Materials Engineering, Gina Cody School of Engineering and Computer Science, Concordia University, Montréal, Québec, Canada
| | - Sana Jahanshahi-Anbuhi
- Department of Chemical and Materials Engineering, Gina Cody School of Engineering and Computer Science, Concordia University, Montréal, Québec, Canada
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Byzova NA, Zherdev AV, Gorbatov AA, Shevyakov AG, Biketov SF, Dzantiev BB. Rapid Detection of Lipopolysaccharide and Whole Cells of Francisella tularensis Based on Agglutination of Antibody-Coated Gold Nanoparticles and Colorimetric Registration. MICROMACHINES 2022; 13:2194. [PMID: 36557493 PMCID: PMC9784915 DOI: 10.3390/mi13122194] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 12/07/2022] [Accepted: 12/08/2022] [Indexed: 06/17/2023]
Abstract
The paper presents development and characterization of a new bioanalytical test system for rapid detection of lipopolysaccharide (LPS) and whole cells of Francisella tularensis, a causative agent of tularemia, in water samples. Gold nanoparticles (AuNPs) coated by the obtained anti-LPS monoclonal antibodies were used for the assay. Their contact with antigen in tested samples leads to aggregation with a shift of absorption spectra from red to blue. Photometric measurements at 530 nm indicated the analyte presence. Three preparations of AuNPs with different diameters were compared, and the AuNPs having average diameter of 34 nm were found to be optimal. The assay is implemented in 20 min and is characterized by detection limits equal to 40 ng/mL for LPS and 3 × 104 CFU/mL for whole cells of F. tularensis. Thus, the proposed simple one-step assay integrates sensitivity comparable with other immunoassay of microorganisms and rapidity. Selectivity of the assay for different strains of F. tularensis was tested and the possibility to choose its variants with the use of different antibodies to distinguish virulent and non-virulent strains or to detect both kinds of F. tularensis was found. The test system has been successfully implemented to reveal the analyte in natural and tap water samples without the loss of sensitivity.
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Affiliation(s)
- Nadezhda A. Byzova
- A.N. Bach Institute of Biochemistry, Research Center of Biotechnology, Russian Academy of Sciences, 119071 Moscow, Russia
| | - Anatoly V. Zherdev
- A.N. Bach Institute of Biochemistry, Research Center of Biotechnology, Russian Academy of Sciences, 119071 Moscow, Russia
| | - Alexey A. Gorbatov
- State Research Center for Applied Microbiology and Biotechnology, 142279 Obolensk, Russia
| | - Anton G. Shevyakov
- State Research Center for Applied Microbiology and Biotechnology, 142279 Obolensk, Russia
| | - Sergey F. Biketov
- State Research Center for Applied Microbiology and Biotechnology, 142279 Obolensk, Russia
| | - Boris B. Dzantiev
- A.N. Bach Institute of Biochemistry, Research Center of Biotechnology, Russian Academy of Sciences, 119071 Moscow, Russia
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Schmitz FRW, Cesca K, Valério A, de Oliveira D, Hotza D. Colorimetric detection of Pseudomonas aeruginosa by aptamer-functionalized gold nanoparticles. Appl Microbiol Biotechnol 2022; 107:71-80. [DOI: 10.1007/s00253-022-12283-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 11/02/2022] [Accepted: 11/08/2022] [Indexed: 11/25/2022]
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Gomes de Lima Oliveira E, César Albuquerque de Oliveira M, Xing Y, Maciel GS, Stevens Leônidas Gomes A, de Oliveira HP. Detection of traces of polymyxin B by “turn-on” type fluorescent reporters: the influence of the relative concentration of gold nanoparticles in a complex with rhodamine B. RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
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Patil T, Gambhir R, Vibhute A, Tiwari AP. Gold Nanoparticles: Synthesis Methods, Functionalization and Biological Applications. J CLUST SCI 2022. [DOI: 10.1007/s10876-022-02287-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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