Cationic helicenes as selective G4 DNA binders and optical probes for cellular imaging

Rhenium coordination-induced conformational modulation in nitrogen-doped nanographene

The conformation of nanographene plays a pivotal role in determining its electronic, mechanical, and optical properties. Analyzing the conformation of nanographene is crucial because of its significant implications in various scientific and technological domains. In this work, we examined the changes in the structural conformation of nanographene upon coordination with a metal. We synthesized a series of nitrogen-doped nanographenes (2, 3, and 4) that differed by one C-C bond and their corresponding nanographene-Re complexes (2Re, 3Re, and 4Re). The conformations of the metal complexes were thoroughly analyzed using various spectroscopic techniques. A comparison of the X-ray crystal structures of nanographene before and after rhenium coordination revealed that rhenium coordination induced conformational changes in the nanographene moiety. Additionally, we assessed the catalytic activity of the nanographene-Re complexes toward the electrocatalytic hydrogen evolution reaction (HER). In the presence of a small amount of weak acid (1.5 mM acetic acid), the nanographene-Re complex exhibited hydrogen production at a low overpotential of 133 mV.

Chiral helical scaffolds: Unlocking their potential in biomolecular interactions and biomedical applications

In nature, various molecules possess spiral geometry. Such helical structures are even prevalent within the human body, represented classically by DNA and three-dimensional (secondary structure) protein folding. In this review, we chose helicenes and helicene-like structures -synthetically accessible carbon-rich molecules- as a compelling example of helically chiral scaffolds. Helicene chemistry, traditionally anchored in materials science, has been a subject of increasing interest in the biomedical field due to the unique optical and chiral properties of these helical structures. This review explores the diverse applications of helicenes in biomedicine, focusing on their role in cell imaging, protective coatings for implants, drug delivery systems, biosensors, and drug discovery. We discuss the unique properties of helicenes and helicene-like structures, highlighting their ability to form complex interactions with various biomolecules and their potential in the development of candidates for therapeutic agents. Recent advances in helicene derivatives with enhanced circularly polarized luminescence and other photochemical properties are also reviewed, underlining their utility in precise bio-imaging and diagnostic techniques. The review consolidates the current literature and emphasizes the growing importance of helicenes in bridging chemistry, materials science, and biology for innovative technological and biomedical applications.

Natural and Magnetic Circular Dichroism From the Infrared to the UV of a Hetero[4]helicene Radical Cation

Dithiabridged triarylamine hetero[4]helicenes are an interesting class of chiral compounds characterized by a high racemization barrier which makes them an attractive material for several applications. Their rich redox chemistry allows one to obtain radical cations stable at room temperature, that can be isolated in two configurationally stable enantiomers. While several studies have been reported on systems with transition metals possessing low-lying electronic states, the characterization of purely organic open-shell systems by VCD is still scarce. This may be due to the instability of radical-cation species and to the dark color assumed by the solution at the high concentration required by VCD. The oxidation of this molecular system shifts the first electronic transition towards the Near-IR (NIR) region, at approximately 1250 nm. By combining ECD, VCD, MCD, NIR-CD and computational methodologies rooted in density functional theory, we have investigated one molecule of this class of compounds and shed some light on the chiroptical properties accessible via redox-switch.

Organocatalytic hydrogen bond donor/Lewis base (HBD/LB) synthesis and chiroptical properties of thiabridged [5]helicenes

Thiabridged [5]helicenes are obtained from thioaryl-N-phthalimido benzo[a]phenothiazines using a hydrogen bond donor/Lewis base organocatalytic approach. Resolution of [5]helicenes using either (1S)-(-)-camphanic acid as a chiral auxiliary or CSP-HPLC is reported. Thiabridged [5]helicenes show an exceptional configurational stability with racemization energy barriers higher than 40 kcal mol-1. Electronic circular dichroism and TD-DFT calculations permit the assignment of the absolute configuration, demonstrating that the sign of optical rotation is not easily related to the M or P structure. Separated enantiomers show circularly polarized luminescence with high dissymmetry ratio.

Crystallization-Induced Chirality Transfer in Conformationally Flexible Azahelicene Au(I) Complexes with Circularly Polarized Luminescence Activation

Flexible and twisted annulated π-systems exhibit numerous unique and desirable features, owing to their ability to display chirality. However, preventing their racemization due to the dynamic nature of their chirality remains a challenge. One promising approach to stabilize homochirality in such systems is chirality transfer from a chiral auxiliary to a moiety displaying dynamic chirality. Herein, we introduce a new approach for dynamic chirality stabilization in conformationally flexible azahelicene species via crystallization-induced intermolecular chirality transfer in Au(I) complexes featuring azahelicene (dibenzo[c,g]carbazole and benzo[c]carbazole) and enantio-pure chiral N-heterocyclic carbene (NHC) ligands with a complementary tailored shape. Crystallization of these azahelicene Au(I) complexes not only suppresses the dynamic chirality of the dibenzocarbazole species but also stabilizes their homochirality through the intermolecular conjunction between the chiral NHC and dibenzocarbazole ligands. In the Au(I) benzocarbazole complexes, the intermolecular conjunction and chirality transfer in the crystals induce chirality in the initially achiral benzocarbazole ligand. Furthermore, the crystallization of the studied complexes activates their circularly polarized luminescence (CPL) properties, which were suppressed in solution. Importantly, chirality transfer leads to significant CPL enhancement; the complexes that feature chirality transfer within the crystal structure exhibit luminescence dissymmetry factors 5 to 10 times higher than those of the complexes without chirality transfer.

Dimeric structures of DNA ATTTC repeats promoted by divalent cations

Structural studies of repetitive DNA sequences may provide insights why and how certain repeat instabilities in their number and nucleotide sequence are managed or even required for normal cell physiology, while genomic variability associated with repeat expansions may also be disease-causing. The pentanucleotide ATTTC repeats occur in hundreds of genes important for various cellular processes, while their insertion and expansion in noncoding regions are associated with neurodegeneration, particularly with subtypes of spinocerebellar ataxia and familial adult myoclonic epilepsy. We describe a new striking domain-swapped DNA-DNA interaction triggered by the addition of divalent cations, including Mg2+ and Ca2+. The results of NMR characterization of d(ATTTC)3 in solution show that the oligonucleotide folds into a novel 3D architecture with two central C:C+ base pairs sandwiched between a couple of T:T base pairs. This structural element, referred to here as the TCCTzip, is characterized by intercalative hydrogen-bonding, while the nucleobase moieties are poorly stacked. The 5'- and 3'-ends of TCCTzip motif are connected by stem-loop segments characterized by A:T base pairs and stacking interactions. Insights embodied in the non-canonical DNA structure are expected to advance our understanding of why only certain pyrimidine-rich DNA repeats appear to be pathogenic, while others can occur in the human genome without any harmful consequences.

Self-Assembled Peptidyl Aggregates for the Fluorogenic Recognition of Mitochondrial DNA G-Quadruplexes

The selective monitoring of G-quadruplex (G4) structures in living cells is important to elucidate their functions and reveal their value as diagnostic or therapeutic targets. Here we report a fluorogenic probe (CV2) able to selectively light-up parallel G4 DNA over antiparallel topologies. CV2 was constructed by conjugating the excimer-forming CV dye with a peptide sequence (l-Arg-l-Gly-glutaric acid) that specifically recognizes G4s. CV2 forms self-assembled, red excimer-emitting nanoaggregates in aqueous media, but specific binding to G4s triggers its disassembly into rigidified monomeric dyes, leading to a dramatic fluorescence enhancement. Moreover, selective permeation of CV2 stains G4s in mitochondria over the nucleus. CV2 was employed for tracking the folding and unfolding of G4s in living cells, and for monitoring mitochondrial DNA (mtDNA) damage. These properties make CV2 appealing to investigate the possible roles of mtDNA G4s in diseases that involve mitochondrial dysfunction.

[5]-Helistatins: Tubulin-Binding Helicenes with Antimitotic Activity

Helicenes are high interest synthetic targets with unique conjugated helical structures that have found important technological applications. Despite this interest, helicenes have had limited impact in chemical biology. Herein, we disclose a first-in-class antimitotic helicene, helistatin 1 (HA-1), where the helicene scaffold acts as a structural mimic of colchicine, a known antimitotic drug. The synthesis proceeds via sequential Pd-catalyzed coupling reactions and a π-Lewis acid cycloisomerization mediated by PtCl2. HA-1 was found to block microtubule polymerization in both cell-free and live cell assays. Not only does this demonstrate the feasibility of using helicenes as bioactive scaffolds against protein targets, but also suggests wider potential for the use of helicenes as isosteres of biaryls or cis-stilbenes-themselves common drug and natural product scaffolds. Overall, this study further supports future opportunities for helicenes for a range of chemical biological applications.

Triple Regioselective Functionalization of Cationic [4]Helicenes via Iridium-Catalyzed Borylation and Suzuki Cross-Coupling Reactivity

In essentially one-pot, using Ir- and Pd-catalysis, tris(arene)-functionalized cationic [4]helicenes are synthesized with full regioselectivity and enantiospecificity starting from a trivial precursor (17 examples). This poly-addition of aryl groups improves key optical properties, that is, fluorescence quantum yields and lifetimes. Electronic circular dichroism and circularly polarized luminescence signatures are observed up to the far-red domain, in particular with additional arenes prone to aggregation.

Acetylene Derivatives of Cationic Diazaoxatriangulenes and Diaza [4]Helicenes ‐ Access to Red Emitters and Planar Chiral Stereochemical Traits

Cationic triangulenes, and related helicenes, constitute a rich class of dyes and fluorophores, usually absorbing and emitting light at low energy, in the orange to red domains. Recently, to broaden the scope of applications, regioselective late‐stage functionalizations on these core moieties have been developed. For instance, with the introduction of electron‐donating groups (EDGs), important bathochromic shifts are observed pushing absorptions towards or in the near‐infrared (NIR) spectral domain while emissive properties disappear essentially completely. Herein, to upset this drawback, acetylene derivatives of cationic diazaoxa triangulenes (DAOTA) and [4]helicenes are prepared (16 examples). Contrary to other EDG‐functionalized derivatives, C≡C− functionalized products remain broadly fluorescent, with red‐shifted absorptions (Δλ_abs up to 25 nm) and emissions (Δλ_em up to 73 nm, Φ_PL up to 51 %). Quite interestingly, a general dynamic stereoisomerism phenomenon is evidenced for the compounds derived from achiral DAOTA cores. At low temperature in ¹H NMR spectroscopy (218 K), N−CH₂ protons become diastereotopic with chemical shifts differences (Δδ) as high as +1.64 ppm. The signal coalescence occurs around 273 K with a barrier of ∼12 kcal mol⁻¹. This phenomenon is due to planar chiral conformations (S_p and R_p configurations), induced by the geometry of the alkyl (n‐propyl) side‐chains next to the acetylenic substituents. Ion pairing studies with Δ‐TRISPHAT anion not only confirm the occurrence of the chiral conformations but evidence a moderate but definite asymmetric induction from the chiral anion onto the cations. Finally, DFT calculations offer a valuable insight on the geometries, the corresponding stereodynamics and also on the very large difference in NMR for some of the diastereotopic protons.